BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1357.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum sero...   248   3e-64
ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium s...   229   1e-58
ref|YP_001099607.1| chemotactic response regulator [Herminiimona...   228   2e-58
ref|YP_546037.1| response regulator receiver domain-containing p...   218   3e-55
ref|YP_003050594.1| response regulator receiver protein [Methylo...   216   7e-55

>ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63523.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  248 bits (632), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM
Sbjct: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL
Sbjct: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120

Query: 121 GKIFEKMAAGG 131
           GKIFEKMAAGG
Sbjct: 121 GKIFEKMAAGG 131


>ref|YP_001353780.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille]
 gb|ABR88844.1| CheY chemotaxis protein [Janthinobacterium sp. Marseille]
          Length = 132

 Score =  229 bits (584), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/131 (91%), Positives = 124/131 (94%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+GPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDG  AL KLRS+QFDFVVSDWNM
Sbjct: 1   MAGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAMALAKLRSEQFDFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGLTMLQ IR DPALSKLPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDEKL
Sbjct: 61  PNMDGLTMLQHIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKL 120

Query: 121 GKIFEKMAAGG 131
            KIFEK+AA G
Sbjct: 121 AKIFEKLAAAG 131


>ref|YP_001099607.1| chemotactic response regulator [Herminiimonas arsenicoxydans]
 emb|CAL61480.1| Chemotaxis protein CheY [Herminiimonas arsenicoxydans]
          Length = 132

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 120/131 (91%), Positives = 125/131 (95%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+GPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGV AL KLRS+ FDFVVSDWNM
Sbjct: 1   MAGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRSETFDFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGLTMLQ+IR DPALSKLPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDEKL
Sbjct: 61  PNMDGLTMLQQIRADPALSKLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKL 120

Query: 121 GKIFEKMAAGG 131
            KIFEK+AA G
Sbjct: 121 AKIFEKLAAAG 131


>ref|YP_546037.1| response regulator receiver domain-containing protein
           [Methylobacillus flagellatus KT]
 gb|ABE50196.1| response regulator receiver domain protein (CheY-like)
           [Methylobacillus flagellatus KT]
          Length = 132

 Score =  218 bits (554), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/131 (87%), Positives = 119/131 (90%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+ PNTKFLVVDDFSTMRRIVRNLLKELGY NVDEAEDGV AL KLRS  FDFVVSDWNM
Sbjct: 1   MANPNTKFLVVDDFSTMRRIVRNLLKELGYNNVDEAEDGVMALAKLRSGSFDFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGLTMLQ+IR DPALS LPVLMVTAEAKKENI+AAAQAGA+GYVVKPFTAATLDEKL
Sbjct: 61  PNMDGLTMLQQIRADPALSSLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLDEKL 120

Query: 121 GKIFEKMAAGG 131
            KIFEK+   G
Sbjct: 121 SKIFEKLEKAG 131


>ref|YP_003050594.1| response regulator receiver protein [Methylovorus glucosetrophus
           SIP3-4]
 ref|YP_004039267.1| response regulator receiver protein [Methylovorus sp. MP688]
 gb|ACT50067.1| response regulator receiver protein [Methylovorus glucosetrophus
           SIP3-4]
 gb|ADQ84031.1| response regulator receiver protein [Methylovorus sp. MP688]
          Length = 132

 Score =  216 bits (551), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 113/131 (86%), Positives = 118/131 (90%)

Query: 1   MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60
           M+ PNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGV AL KLR   F+FVVSDWNM
Sbjct: 1   MANPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVMALSKLRGGNFEFVVSDWNM 60

Query: 61  PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120
           PNMDGLTML+EIR DP LS LPVLMVTAEAKKENI+AAAQAGANGYVVKPFTAATLDEKL
Sbjct: 61  PNMDGLTMLKEIRADPTLSSLPVLMVTAEAKKENIIAAAQAGANGYVVKPFTAATLDEKL 120

Query: 121 GKIFEKMAAGG 131
            KIFEK+   G
Sbjct: 121 AKIFEKLEKSG 131