BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1355.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedic... 391 e-107 ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bac... 337 4e-91 ref|YP_315374.1| chemoreceptor glutamine deamidase CheD [Thiobac... 330 7e-89 ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Jant... 322 2e-86 ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herm... 319 1e-85 >ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ63521.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 193/201 (96%), Positives = 199/201 (99%) Query: 1 MSHASEQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGG 60 MS ASEQIA+NLYYDRTFDCDAAKILPGE+YFT+KDMMIVTVLGSCVSACIRDRVSGIGG Sbjct: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 Query: 61 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFS 120 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLIN+VLKSGARRENLEAKVFGGGNVLRGFS Sbjct: 61 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120 Query: 121 AINVGERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVN 180 AINVGERNAEFVRRYLKAE IRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHN+TLV+ Sbjct: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180 Query: 181 REKAYASKLVTKPVGGEVDLF 201 REKAYASKLVTKPVGGEVDLF Sbjct: 181 REKAYASKLVTKPVGGEVDLF 201 >ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] gb|EGF31639.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 162/196 (82%), Positives = 181/196 (92%) Query: 6 EQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 EQ ATN+YYDRTFDCDAAKILPGE++FT KDM+IVTVLGSCVSACIRDRVSGIGGMNHFM Sbjct: 7 EQFATNVYYDRTFDCDAAKILPGEYFFTPKDMLIVTVLGSCVSACIRDRVSGIGGMNHFM 66 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LP GG D SPVSAS RYGTYAMEVLINE+LK+GARRENLEAKVFGGGNVLRGF AINVG Sbjct: 67 LPYGGTDIDSPVSASMRYGTYAMEVLINELLKAGARRENLEAKVFGGGNVLRGFIAINVG 126 Query: 126 ERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVNREKAY 185 ERNA+FVR YLK E IRV+AEDLNDI+PRKVY+FPR+GKVLVKKLKQ++N+TLVNRE+ Y Sbjct: 127 ERNAQFVREYLKMENIRVIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 186 ASKLVTKPVGGEVDLF 201 A++L + PV G+VDLF Sbjct: 187 ATRLQSAPVSGDVDLF 202 >ref|YP_315374.1| chemoreceptor glutamine deamidase CheD [Thiobacillus denitrificans ATCC 25259] sp|Q3SIF9|CHED_THIDA RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|AAZ97569.1| CheD, stimulates methylation of MCP proteins [Thiobacillus denitrificans ATCC 25259] Length = 202 Score = 330 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 157/200 (78%), Positives = 181/200 (90%) Query: 2 SHASEQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGGM 61 S EQ+ATNLYYDR FDC+ AKILPGE+YFT+K M+IVTVLGSCV+ACIRDRVSGIGGM Sbjct: 3 SAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIGGM 62 Query: 62 NHFMLPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFSA 121 NHFMLPDGGGD G+P+SAS RYG YAMEVLIN++LK+GARRENLEAKVFGGGNVLRGF+ Sbjct: 63 NHFMLPDGGGDPGNPLSASMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGFTT 122 Query: 122 INVGERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVNR 181 +NVGERNA+FVR +L+AE IRVVAEDLND++PRKVYFFPRTG+VLVKKLKQ++N TLV R Sbjct: 123 MNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFFPRTGRVLVKKLKQLNNYTLVKR 182 Query: 182 EKAYASKLVTKPVGGEVDLF 201 E+ YAS+L + V GEVDLF Sbjct: 183 EQDYASRLKSNVVAGEVDLF 202 >ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Janthinobacterium sp. Marseille] sp|A6SZT5|CHED_JANMA RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|ABR88351.1| chemotaxis protein [Janthinobacterium sp. Marseille] Length = 203 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 152/196 (77%), Positives = 180/196 (91%) Query: 6 EQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 E ATN+YYDRTFD DAAKILPGE+Y+T KDM+IVTVLGSCVSACIRDRV+G+GGMNHFM Sbjct: 7 EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LPDGGGD SP+SASARYGTYAME+LIN++LK+GARRENLEAKVFGGGNVL GFS+INVG Sbjct: 67 LPDGGGDADSPISASARYGTYAMEILINDLLKAGARRENLEAKVFGGGNVLSGFSSINVG 126 Query: 126 ERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVNREKAY 185 ERNA+FVR +LK E IR+VAEDLND++PRKVY+FPR GKVLVKKL+Q++N+TLVNRE+ Y Sbjct: 127 ERNAQFVRNFLKVENIRIVAEDLNDVHPRKVYYFPRNGKVLVKKLRQLNNNTLVNREQDY 186 Query: 186 ASKLVTKPVGGEVDLF 201 A++L + V G+V+LF Sbjct: 187 ANRLQSGSVSGDVELF 202 >ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herminiimonas arsenicoxydans] sp|A4G4P0|CHED_HERAR RecName: Full=Probable chemoreceptor glutamine deamidase CheD emb|CAL61477.1| Chemotaxis protein CheD [Herminiimonas arsenicoxydans] Length = 203 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 151/196 (77%), Positives = 179/196 (91%) Query: 6 EQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 E ATN+YYDRTFD DAAKILPGE+Y+T KDM+IVTVLGSCVSACIRDRV+G+GGMNHFM Sbjct: 7 EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LPD G D SPVSASARYGTYAMEVLIN++LK+GA+RENLEAKVFGGG VLRGF A+NVG Sbjct: 67 LPDSGADADSPVSASARYGTYAMEVLINDLLKAGAKRENLEAKVFGGGAVLRGFIAMNVG 126 Query: 126 ERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVNREKAY 185 ERNA+FVR +LK EGIR++AEDLNDI+PRKVY+FPR+GKVLVKKLKQ++N+TLVNRE+ Y Sbjct: 127 ERNAQFVRDFLKVEGIRIIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 186 ASKLVTKPVGGEVDLF 201 A++L + V G+++LF Sbjct: 187 ANRLQSNNVAGDIELF 202