BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1351.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775426.1| hypothetical protein Hsero_2018 [Herbaspiril...   124   5e-27
ref|YP_234593.1| hypothetical protein Psyr_1505 [Pseudomonas syr...   109   2e-22
ref|YP_003607029.1| hypothetical protein BC1002_3485 [Burkholder...   103   1e-20
ref|YP_349203.1| hypothetical protein Pfl01_3474 [Pseudomonas fl...   100   8e-20
ref|YP_259614.1| transcriptional repressor, FrmR family [Pseudom...    99   2e-19

>ref|YP_003775426.1| hypothetical protein Hsero_2018 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63518.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 91

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 83/91 (91%), Positives = 84/91 (92%)

Query: 1  MAHLTQQTDALLKRVRRIGGQVQALERALEGEADCAKTLHLAAAIRGAVHGLMDELIEAH 60
          MAHLTQ  DALLKRVRRIGGQVQALERALEGE DCAKTLHLAAAIRGAVHGLMDELIEAH
Sbjct: 1  MAHLTQDKDALLKRVRRIGGQVQALERALEGETDCAKTLHLAAAIRGAVHGLMDELIEAH 60

Query: 61 AREHVAAPSLTDEQRQQGLEEVLEAIRRYAK 91
          AREHVA P LTD +R QGLEEVLEAIRRYAK
Sbjct: 61 AREHVARPGLTDAERSQGLEEVLEAIRRYAK 91


>ref|YP_234593.1| hypothetical protein Psyr_1505 [Pseudomonas syringae pv. syringae
          B728a]
 gb|AAY36555.1| Protein of unknown function DUF156 [Pseudomonas syringae pv.
          syringae B728a]
          Length = 91

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/91 (68%), Positives = 77/91 (84%)

Query: 1  MAHLTQQTDALLKRVRRIGGQVQALERALEGEADCAKTLHLAAAIRGAVHGLMDELIEAH 60
          M H+    D LLKRV+RI GQ+QA+ERALE + DCAKTLHL AA RGA++GLMDE+IE H
Sbjct: 1  MTHVASNKDDLLKRVKRIAGQIQAVERALESDHDCAKTLHLVAATRGAINGLMDEIIEDH 60

Query: 61 AREHVAAPSLTDEQRQQGLEEVLEAIRRYAK 91
          AREHVA P+L+DE+R +G+EE+LEAIRRY+K
Sbjct: 61 AREHVANPALSDEERSKGVEELLEAIRRYSK 91


>ref|YP_003607029.1| hypothetical protein BC1002_3485 [Burkholderia sp. CCGE1002]
 gb|ADG17518.1| protein of unknown function DUF156 [Burkholderia sp. CCGE1002]
          Length = 91

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 75/91 (82%)

Query: 1  MAHLTQQTDALLKRVRRIGGQVQALERALEGEADCAKTLHLAAAIRGAVHGLMDELIEAH 60
          M+HL+   D LLKRVRRI GQVQA+ER+LE +ADC K LHL AA RGA++GL+DE++EAH
Sbjct: 1  MSHLSTHKDGLLKRVRRIAGQVQAIERSLESDADCEKVLHLVAATRGAMNGLLDEIVEAH 60

Query: 61 AREHVAAPSLTDEQRQQGLEEVLEAIRRYAK 91
          AREHVA P LT  QR++G++ ++ AIRRY+K
Sbjct: 61 AREHVAHPDLTANQRKKGVDALVGAIRRYSK 91


>ref|YP_349203.1| hypothetical protein Pfl01_3474 [Pseudomonas fluorescens Pf0-1]
 gb|ABA75212.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 91

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 64/91 (70%), Positives = 75/91 (82%)

Query: 1  MAHLTQQTDALLKRVRRIGGQVQALERALEGEADCAKTLHLAAAIRGAVHGLMDELIEAH 60
          M+H  +    LL RVRRI GQVQA+E+ALE EADCAKTLHL AAIRGAV+GLM++ IEAH
Sbjct: 1  MSHTHEHKGELLNRVRRIAGQVQAVEKALESEADCAKTLHLMAAIRGAVNGLMEQFIEAH 60

Query: 61 AREHVAAPSLTDEQRQQGLEEVLEAIRRYAK 91
          AREHVA P L+DE R QG+EE+L AIRRY+K
Sbjct: 61 AREHVARPDLSDEARAQGVEELLLAIRRYSK 91


>ref|YP_259614.1| transcriptional repressor, FrmR family [Pseudomonas fluorescens
          Pf-5]
 gb|AAY91780.1| transcriptional repressor, FrmR family [Pseudomonas fluorescens
          Pf-5]
          Length = 91

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/91 (68%), Positives = 73/91 (80%)

Query: 1  MAHLTQQTDALLKRVRRIGGQVQALERALEGEADCAKTLHLAAAIRGAVHGLMDELIEAH 60
          M+H   Q D LLKRVRRI GQVQA+ERALE  ADC KTLHL AA RGA+ GLM E+IEAH
Sbjct: 1  MSHTHAQKDELLKRVRRILGQVQAVERALESGADCGKTLHLVAATRGAISGLMGEIIEAH 60

Query: 61 AREHVAAPSLTDEQRQQGLEEVLEAIRRYAK 91
          A EHVA P L+D +R +G++E+LEAIRRY+K
Sbjct: 61 ALEHVANPELSDAERARGVDELLEAIRRYSK 91