BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1347.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003675201.1| GMC oxidoreductase [Methylotenera versatilis... 539 e-151 gb|EGP46777.1| capsular polysaccharide biosynthesis oxidoreducta... 262 8e-68 ref|YP_004618188.1| oxidoreductase-like protein [Ramlibacter tat... 261 2e-67 ref|YP_548715.1| FAD dependent oxidoreductase [Polaromonas sp. J... 255 8e-66 ref|YP_787139.1| capsular polysaccharide biosynthesis oxidoreduc... 248 1e-63 >ref|YP_003675201.1| GMC oxidoreductase [Methylotenera versatilis 301] gb|ADI30624.1| GMC oxidoreductase [Methylotenera versatilis 301] Length = 550 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 254/423 (60%), Positives = 315/423 (74%), Gaps = 1/423 (0%) Query: 1 MQYCDAGAADFTPASLAGGNGPMFSELPRLQEALTEYIERYSLPTDFAAKFAEELKASDR 60 M YCDAG ADFT +LAG PMF ELP LQ L E IERYSLPTDF+ K+ EL +S Sbjct: 123 MSYCDAGVADFTINALAGNAAPMFDELPNLQPHLQERIERYSLPTDFSKKYKNELSSSKL 182 Query: 61 VTVVLRARCTRLVASADGSHIESIVLHDGQQQVPVRAGQFVLAGGAIEATRLLLCTREEL 120 V+LRARCT+L + + + SI + DG ++ + A F+L GG IE TRLLL TR Sbjct: 183 AQVLLRARCTKLNLTDQDNRVTSIEVTDGLHKLTINAANFILCGGGIETTRLLLSTRAHA 242 Query: 121 PAWQRFDGSLGRYYACHFDLIFGEMRLTGEKPRFSFQKTQDGVYARRKLQFTPQWQNQLG 180 P W RFD +LG++Y CH+DLIFG++ +G+KP F F+KT+DGVYARRKLQF+ +Q + G Sbjct: 243 PNWARFDPALGKFYGCHYDLIFGDLSFSGKKPFFDFKKTKDGVYARRKLQFSQAFQAEHG 302 Query: 181 LLNSTLRLHFPSYGDPGHGSGVLSAIYLAKSVLPSEHQDILNHGSQSA-AADPRRLAHLR 239 LLNS RLHFP+Y D GHGSGVLS IYLAKS+L SEHQ ILNHG+ S + LAH++ Sbjct: 303 LLNSVFRLHFPAYADAGHGSGVLSTIYLAKSILASEHQSILNHGASSGNKINNSSLAHIK 362 Query: 240 NVMFDAGSVFGFAYDMVVKRKLAKRKLPYTLIPNRNGTYPLEFNSEQVGDAGNCILLLDA 299 NV D GSVF F YD + K KLA+R+LPYTL+PNRNG+YPLEFNSEQV DA N I LLD Sbjct: 363 NVATDIGSVFSFGYDYIFKMKLAERRLPYTLVPNRNGSYPLEFNSEQVPDASNKITLLDQ 422 Query: 300 TDRYGMRRVDVQWRLTAQDIESGIQSFTTMQSLLAKTRHCRLDFDPGELREQVTRALPVG 359 D GM RV V W+LT DI SG++SF +Q LLA T+ C+L FD GEL+E+++ ALPVG Sbjct: 423 VDAQGMPRVSVHWKLTETDIASGVESFIQLQRLLATTQACKLAFDYGELKERISGALPVG 482 Query: 360 GHHIGSTRMGTSVRDSVVDTDCRLHGVDNLLVLSSSVFPTNGHANPTLSIVAMALRMAEH 419 GHHIG+T+MG+S ++SVVD +C+LHGV NL V S+SVFPTN HANPTL+I+A+ALR+A + Sbjct: 483 GHHIGTTKMGSSAQNSVVDKNCQLHGVANLFVASASVFPTNSHANPTLTIIALALRLANY 542 Query: 420 LRR 422 L R Sbjct: 543 LDR 545 >gb|EGP46777.1| capsular polysaccharide biosynthesis oxidoreductase [Achromobacter xylosoxidans AXX-A] Length = 560 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 166/435 (38%), Positives = 241/435 (55%), Gaps = 31/435 (7%) Query: 4 CDAGAADFTPAS---------LAGGNGPMFSELPRLQEALTEYIERYSLPTDFAAKFAEE 54 C+AG +T + + G + P FS T+ +ER+S+PTDF ++AE Sbjct: 128 CEAGDFAYTVETAFHRPVRPMIEGFDSPEFS---------TDTLERFSVPTDFGWRYAER 178 Query: 55 LKASDRVTVVLRARCTRLVASADGSHIESIVLHD--GQQQVPVRAGQFVLAGGAIEATRL 112 L+ V V+ A +L + A G+ + + G VRA +VLA G +E RL Sbjct: 179 LRQGP-VRVLQNANLCQLDSGAAGAPVGPARVRTLAGNNVFTVRARAYVLATGGLETARL 237 Query: 113 LLCTREELPAWQRFDGS----LGRYYACHFDLIFGEMRLTGEKPRF-SFQKTQDGVYARR 167 LL A R G+ +GRYY CH G + L G + + ++ + +G+Y RR Sbjct: 238 LLANPG---ASGRGLGNAHDVVGRYYMCHIAGTIGNVDLAGARSVWHGYEVSDEGIYCRR 294 Query: 168 KLQFTPQWQNQLGLLNSTLRLHFPSYGDPGHGSGVLSAIYLAKSVLPSEHQDILNHGSQS 227 +L P+ Q +L N RLH P DPGHGSGVLSA+YLA+ V+P E+ L + Sbjct: 295 RLALQPEAQRRLHAGNFIARLHHPRIPDPGHGSGVLSALYLARPVVPYEYAKRLYGDTPG 354 Query: 228 AAADPRRLAHLRNVMFDAGSVFGFAYDMVVKRKLAKRKLPYTLIPNRNGTYPLEFNSEQV 287 + L+HLRNV+ A + F + M+ +RKLA RK P ++ RN Y L+F++EQ Sbjct: 355 SLG--LWLSHLRNVLLGAPATARFMWHMLTERKLAARKFPSIIVQPRNHRYSLDFHAEQE 412 Query: 288 GDAGNCILLLDATDRYGMRRVDVQWRLTAQDIESGIQSFTTMQSLLAKTRHCRLDFDPGE 347 + + + L + D GMRR+ + WR T +D+ + + + LA + R D+DP + Sbjct: 413 PNPDSRVTLGNEVDALGMRRLHIDWRYTPRDVATVQTALAALAEALAASGVGRFDYDPAQ 472 Query: 348 LREQVTRALPVGGHHIGSTRMGTSVRDSVVDTDCRLHGVDNLLVLSSSVFPTNGHANPTL 407 + ++TR GGHHIG+ RMG RDSVVD DCR+H NL V S+VFPT+G ANPTL Sbjct: 473 VEAEMTRYGAYGGHHIGTARMGHDPRDSVVDADCRVHETRNLYVAGSAVFPTSGQANPTL 532 Query: 408 SIVAMALRMAEHLRR 422 +IVA+ALR+A+HLRR Sbjct: 533 TIVALALRLADHLRR 547 >ref|YP_004618188.1| oxidoreductase-like protein [Ramlibacter tataouinensis TTB310] gb|AEG92169.1| oxidoreductases-like protein [Ramlibacter tataouinensis TTB310] Length = 561 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 164/418 (39%), Positives = 226/418 (54%), Gaps = 17/418 (4%) Query: 8 AADFTPASLAGGNGPMFSELPRLQEALTEYIERYSLPTDFAAKFAEELKASDRVTVVLRA 67 A F+P +AG S++ R T +ER+S PT F ++A L+ + + V+ A Sbjct: 140 AFPFSPPMIAG----FTSDIVR-----TTGLERFSCPTHFGKRYARRLQLAPDIRVLRGA 190 Query: 68 RCTRLVASADGSHIESIVLHDGQ-QQVPVRAGQFVLAGGAIEATRLLLCTREELPAW--Q 124 CT + ADGS + ++ + + + VRA VLA G +E RLLLC+ + PA Sbjct: 191 VCTGIRLQADGSAVRALDIATLEGNRFGVRARASVLATGGLETARLLLCSNDVTPAGVGN 250 Query: 125 RFDGSLGRYYACHFDLIFGEMRLTGEKP--RFSFQKTQDGVYARRKLQFTPQWQNQLGLL 182 +FD +GRYY CH G + + G R ++ DGVY RR+L P Q Q LL Sbjct: 251 QFD-VVGRYYQCHIAGNVGTLTVNGPPSDVRHGYEVAPDGVYCRRRLSIAPARQRQHQLL 309 Query: 183 NSTLRLHFPSYGDPGHGSGVLSAIYLAKSVLPSEHQDILNHGSQSAAADPRRLAHLRNVM 242 N+ RLHFP DP HGSGVLS ++LA+ ++ E+ L AD R HL NV Sbjct: 310 NAVARLHFPKITDPSHGSGVLSGLFLARKMISYEYGKRLADRKPPTLADYAR--HLFNVA 367 Query: 243 FDAGSVFGFAYDMVVKRKLAKRKLPYTLIPNRNGTYPLEFNSEQVGDAGNCILLLDATDR 302 D F V +R LA+RK P ++ NR + LE SEQ A + + L D TD Sbjct: 368 SDPLDTAAFLAHWVSRRTLAQRKFPSVILRNRINRFSLEVQSEQQPLATSRVQLCDRTDP 427 Query: 303 YGMRRVDVQWRLTAQDIESGIQSFTTMQSLLAKTRHCRLDFDPGELREQVTRALPVGGHH 362 GMRR+ V WR + DI+S Q+ M + LA++ R + L E + R GGHH Sbjct: 428 LGMRRIRVDWRYSRDDIDSVAQTLDLMAAELARSGAGRFSYQRATLEEDLLRYGAYGGHH 487 Query: 363 IGSTRMGTSVRDSVVDTDCRLHGVDNLLVLSSSVFPTNGHANPTLSIVAMALRMAEHL 420 IG+ RMG R SVVD DC+LH V L V S+ FPT+ ANPTL+I+A++LR+A+HL Sbjct: 488 IGTARMGPDPRTSVVDRDCKLHAVSGLYVAGSAAFPTSSQANPTLTIIALSLRLADHL 545 >ref|YP_548715.1| FAD dependent oxidoreductase [Polaromonas sp. JS666] gb|ABE43817.1| FAD dependent oxidoreductase [Polaromonas sp. JS666] Length = 562 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 147/389 (37%), Positives = 216/389 (55%), Gaps = 6/389 (1%) Query: 38 IERYSLPTDFAAKFAEELKASDRVTVVLRARCTRLVASADGSHIESI-VLHDGQQQVPVR 96 +ER+S PT F ++A+ L+ + V V+L A CT + ADG + ++ V ++ V Sbjct: 162 LERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVT 221 Query: 97 AGQFVLAGGAIEATRLLLCTREELPAW-QRFDGSLGRYYACHFDLIFGEMRLTG--EKPR 153 VLA G +E RLLL +R+ PA F +GRYY CH G + + G R Sbjct: 222 PRAAVLAAGGLETARLLLASRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVR 281 Query: 154 FSFQKTQDGVYARRKLQFTPQWQNQLGLLNSTLRLHFPSYGDPGHGSGVLSAIYLAKSVL 213 ++ +G+Y RR+L T Q +LGL N+ RLHFP DP H +GVLS ++LA+ ++ Sbjct: 282 HGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPRITDPAHRNGVLSGLFLARRLI 341 Query: 214 PSEHQDILNHGSQSAAADPRRLAHLRNVMFDAGSVFGFAYDMVVKRKLAKRKLPYTLIPN 273 E+ LN G+ ++ R HL NV+ D F +++R LA+RK P ++ N Sbjct: 342 SYEYGKRLNDGNATSPGHYAR--HLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRN 399 Query: 274 RNGTYPLEFNSEQVGDAGNCILLLDATDRYGMRRVDVQWRLTAQDIESGIQSFTTMQSLL 333 R + LE + EQ+ AG+ + L D D GM ++ V WR + DI+S + + Sbjct: 400 RTNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEF 459 Query: 334 AKTRHCRLDFDPGELREQVTRALPVGGHHIGSTRMGTSVRDSVVDTDCRLHGVDNLLVLS 393 A++ D++ L E + R GGHHIG+ RMG R SVVD DCR+H V NL V Sbjct: 460 AQSGVASFDYNRDTLEEDIMRFGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAG 519 Query: 394 SSVFPTNGHANPTLSIVAMALRMAEHLRR 422 S+VFPT+ ANPTL+++AM+LR+ EHL R Sbjct: 520 SAVFPTSSQANPTLTLIAMSLRLGEHLAR 548 >ref|YP_787139.1| capsular polysaccharide biosynthesis oxidoreductase [Bordetella avium 197N] emb|CAJ50251.1| putative capsular polysaccharide biosynthesis oxidoreductase [Bordetella avium 197N] Length = 557 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 159/437 (36%), Positives = 237/437 (54%), Gaps = 34/437 (7%) Query: 4 CDAGAADFTPAS---------LAGGNGPMFSELPRLQEALTEYIERYSLPTDFAAKFAEE 54 C+AG +T A+ +AG +GP FS T+ +ER+S PTDF ++ E Sbjct: 128 CEAGDFAYTAATAFHHPLQPMIAGFDGPSFS---------TDTLERFSCPTDFGQRYGER 178 Query: 55 LKASDRVTVVLRARCTRL-----VASADGSHIESIVLHDGQQQVPVRAGQFVLAGGAIEA 109 L+ + V+ A RL A +H+ ++ VRA +VLA G +E Sbjct: 179 LRRGP-IRVLQHANLCRLDGDKAQAPVGPAHVRTL----SGIAFTVRARAYVLATGGLET 233 Query: 110 TRLLLCT--REELPAWQRFDGSLGRYYACHFDLIFGEMRLTGEKPRF-SFQKTQDGVYAR 166 RLLL + L D +GRYY CH G + L+ + + + +GVY R Sbjct: 234 ARLLLSSPGASGLGLGNAHD-VVGRYYMCHLAGTIGSVDLSRAASVWHGYDISDEGVYCR 292 Query: 167 RKLQFTPQWQNQLGLLNSTLRLHFPSYGDPGHGSGVLSAIYLAKSVLPSEHQDILNHGSQ 226 R+L P Q +L N RLH P DPGHG+G+LSA+YLA+ ++P E+ L +G Sbjct: 293 RRLALRPSAQRRLQAGNFVARLHHPRIPDPGHGNGILSALYLARPIVPYEYARRL-YGDT 351 Query: 227 SAAADPRRLAHLRNVMFDAGSVFGFAYDMVVKRKLAKRKLPYTLIPNRNGTYPLEFNSEQ 286 A+A LAHLRN + A + GF + + +R LA RK P ++ N Y L+F++EQ Sbjct: 352 PASAG-LWLAHLRNAIVGAPAAAGFLWHWLNRRTLAARKFPSVIVHPHNERYSLDFHAEQ 410 Query: 287 VGDAGNCILLLDATDRYGMRRVDVQWRLTAQDIESGIQSFTTMQSLLAKTRHCRLDFDPG 346 + + + L TD GM R+ + WR T +D+ + ++ + L ++ R ++DP Sbjct: 411 APNPDSRVTLGPQTDALGMPRLHIDWRYTPEDVVTVQRALAALAQDLDRSGVGRFEYDPE 470 Query: 347 ELREQVTRALPVGGHHIGSTRMGTSVRDSVVDTDCRLHGVDNLLVLSSSVFPTNGHANPT 406 ++ ++TR GGHHIG+ RMG+ R+SVVD +CR+H NL + SS+VFPT+ ANPT Sbjct: 471 QVEAEMTRYGAYGGHHIGTARMGSDPRNSVVDANCRVHETSNLYIASSAVFPTSSQANPT 530 Query: 407 LSIVAMALRMAEHLRRG 423 L+IVA+ALR+A HLRR Sbjct: 531 LTIVALALRLAGHLRRA 547