BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1345.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_548714.1| NAD-dependent epimerase/dehydratase [Polaromona... 240 2e-61 ref|YP_004618187.1| UDP- galactose 4-epimerase [Ramlibacter tata... 214 2e-53 ref|YP_787140.1| capsular polysaccharide biosynthesis protein [B... 157 2e-36 gb|EGP46778.1| capsular polysaccharide biosynthesis protein [Ach... 155 1e-35 ref|ZP_06308623.1| Oxidoreductase (hgdA) [Cylindrospermopsis rac... 72 9e-11 >ref|YP_548714.1| NAD-dependent epimerase/dehydratase [Polaromonas sp. JS666] gb|ABE43816.1| NAD-dependent epimerase/dehydratase [Polaromonas sp. JS666] Length = 342 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 141/325 (43%), Positives = 187/325 (57%), Gaps = 49/325 (15%) Query: 47 VKVLVLGATGFIGQRLVTRLRDSGWATPVLAGR--------------------------- 79 ++VLVLG +G IG +LV L+ + WA PV A R Sbjct: 4 LRVLVLGGSGHIGTQLVEALKSTPWAVPVSASRSTVSAGHGNVETMRVDSRDVQALTSAL 63 Query: 80 --------------RAPRERER---EAALQTSRPRIVHMSSMAVYGNQEGCLNEDSPLDP 122 R+ E R +AAL T RIVH+S+M+VYG EG + ED+ ++P Sbjct: 64 EGFDAVVNCVAGDARSISEGARVLVQAALGTQCRRIVHLSTMSVYGPVEGMVREDTAINP 123 Query: 123 AASWYAQAKCEAEEHMKVYAEAGHPLVMLRPGCVYGPGSDMWVEQMARLVAAGRLGDLGA 182 + WY QAKC+AE+HM+ +A G +V+LRPGCV+GPGS++WV ++ R + GRLGDLGA Sbjct: 124 SLGWYGQAKCDAEKHMREFARRGGEVVVLRPGCVFGPGSELWVGRVGRWLQTGRLGDLGA 183 Query: 183 SGEGWSNLVHVDDVCAAVLLSLQYASRSPDASPVPAPVFNLTGDDSPRWNRYFVDLALAL 242 +G+GWSNLVHVDDV A++ +LQ RS D PVFNL DSPRWN YFVDLALAL Sbjct: 184 AGDGWSNLVHVDDVSQALMAALQLPVRSGD-----MPVFNLAAPDSPRWNDYFVDLALAL 238 Query: 243 GAGAAPRISPLRLKLDARLGTLFIRVLQRLARAAGKSGRGLPVALSPSFLRLWQQQLRID 302 A RI P +L+LDA L ++V+Q + G+ G+P + P +RLW Q + +D Sbjct: 239 QATPVLRIGPRQLRLDALLAGPPLKVMQLALKRLGRPASGVPDPMPPGLIRLWAQHIHLD 298 Query: 303 GQRARSVLGFAPRPYAQGLAESAQW 327 +A LG PYA GL SA W Sbjct: 299 ATQAAQTLGLTWTPYAVGLQSSADW 323 >ref|YP_004618187.1| UDP- galactose 4-epimerase [Ramlibacter tataouinensis TTB310] gb|AEG92168.1| UDP- galactose 4-epimerase [Ramlibacter tataouinensis TTB310] Length = 348 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 140/329 (42%), Positives = 183/329 (55%), Gaps = 52/329 (15%) Query: 47 VKVLVLGATGFIGQRLVTRLRDSGWATPVLAGRRAP------------REREREAALQTS 94 +KVLVLG +G+IG RL L+ +GWA P+ A RAP E ALQ + Sbjct: 1 MKVLVLGGSGYIGSRLCQMLQATGWAIPISASSRAPLSVPGHLRLDTRDEPALTRALQEA 60 Query: 95 R-----------------------------PRIVHMSSMAVYGNQEGCLNEDSPLDPAAS 125 PR+VH SSMAVYG++EG L E + A Sbjct: 61 DAVVNCVAGSAAAIAEGAAVLARAVVAADFPRLVHFSSMAVYGDREGLLAEQAAAGAAQG 120 Query: 126 WYAQAKCEAEEHMKVYAEAGHPLVMLRPGCVYGPGSDMWVEQMARLVAAGRLGDLGASGE 185 WYA+AKC++E H+ A AG +LRPGCV+GPGS +WV ++AR +AAGRLGDLG G+ Sbjct: 121 WYARAKCDSERHIATVAAAGGSATVLRPGCVWGPGSHLWVGRIARWLAAGRLGDLGEDGD 180 Query: 186 GWSNLVHVDDVCAAVLLSLQYASRSPDASPVPA---PVFNLTGDDSPRWNRYFVDLALAL 242 GWSNLVHVDDVC+AV+ +L+ PVPA NL G DSPRWN YF D+ALA+ Sbjct: 181 GWSNLVHVDDVCSAVVAALR--------KPVPAGQVRTLNLAGPDSPRWNDYFADVALAI 232 Query: 243 GAGAAPRISPLRLKLDARLGTLFIRVLQRLARAAGKSGRGLPVALSPSFLRLWQQQLRID 302 GA R+ +++ DA L + V++R+ G+ LP L+P L LWQ+Q ++D Sbjct: 233 GAEPMRRMRRQQMRADAYLAGPPLHVIRRVLGRLGRPVAALPDPLTPGLLGLWQRQQKLD 292 Query: 303 GQRARSVLGFAPRPYAQGLAESAQWALNE 331 A VLG PYA GL +S W L + Sbjct: 293 ATAAEQVLGLRWTPYATGLRQSMAWLLTD 321 >ref|YP_787140.1| capsular polysaccharide biosynthesis protein [Bordetella avium 197N] emb|CAJ50252.1| putative capsular polysaccharide biosynthesis protein [Bordetella avium 197N] Length = 312 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 164/319 (51%), Gaps = 57/319 (17%) Query: 48 KVLVLGATGFIGQRLVTRLRDSGWATPVLAGRR-APR--------EREREAALQTSRPR- 97 ++LVLGA G++G+R+V L S WA P+ RR AP + AALQ + Sbjct: 4 RILVLGANGYVGRRIVAALAASDWAEPIAGLRRPAPALTVNQEIFDATDSAALQRVLAQA 63 Query: 98 --------------------------------IVHMSSMAVYGNQEGCLNEDSPLDPAAS 125 +VH SSM+VYG +G ++E PL S Sbjct: 64 DGVVNCVAGAPGVMVQGAIALRDALAALPSLPLVHFSSMSVYGPAQGAIDESQPLAQGLS 123 Query: 126 WYAQAKCEAEEHMKVYAEAGHPLVMLRPGCVYGPGSDMWVEQMARLVAAGRLGDLGASGE 185 Y AK EAE + +A VMLRPGC+YGPGS W ++A L+ AGR+GDLGA+G+ Sbjct: 124 GYGGAKVEAERVLAEHA------VMLRPGCIYGPGSPQWSLRIASLLQAGRIGDLGAAGD 177 Query: 186 GWSNLVHVDDVCAAVLLSLQYASRSPDASPVPAPVFNLTGDDSPRWNRYFVDLALALGAG 245 G SNLV++DDV AAVL +L R P+ P A FNL +P WN YF+ A ALGA Sbjct: 178 GCSNLVYIDDVVAAVLAAL----RLPEVKPGQA--FNLAMAQAPDWNAYFLAYARALGAV 231 Query: 246 AAPRISPLRLKLDARLGTLFIRVLQRLARAAGKSGRGLPVALSPSFLRLWQQQLRIDGQR 305 RI RLK++ RL +++ + R G + +P + PS LRLW Q +R+ + Sbjct: 232 PLRRIGARRLKIETRLLAPALKIAEIGLRRIGLT---VPPPIPPSLLRLWGQDIRLISAQ 288 Query: 306 ARSVLGFAPRPYAQGLAES 324 A LG + QGLA + Sbjct: 289 AEKTLGLSWTALEQGLAAT 307 >gb|EGP46778.1| capsular polysaccharide biosynthesis protein [Achromobacter xylosoxidans AXX-A] Length = 310 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 160/321 (49%), Gaps = 56/321 (17%) Query: 48 KVLVLGATGFIGQRLVTRLRDSGWATPVLAGRRAPREREREAALQTSRP----------- 96 ++LVLGA G++G+R+V+ L DS WA PV RRA R++ RE L + P Sbjct: 4 RILVLGANGYVGRRVVSALADSDWADPVAGVRRA-RQQGREIVLDATDPAAVARALGEVD 62 Query: 97 -----------------------------RIVHMSSMAVYGNQEGCLNEDSPLDPAASWY 127 R+VH SSMAVYG G ++ED P+ Y Sbjct: 63 AVVNCVAGSPDAMTAGARALATALDTRAARLVHFSSMAVYGAARGDISEDHPMAANLQGY 122 Query: 128 AQAKCEAEEHMKVYAEAGHPLVMLRPGCVYGPGSDMWVEQMARLVAAGRLGDLGASGEGW 187 A AK E E + A ++ LRPGC+YGP S W ++A L+ A R+GDLGA+G+G Sbjct: 123 AGAKVETERLLA----ARDTVITLRPGCIYGPDSPQWSLRIADLLRAHRIGDLGAAGDGC 178 Query: 188 SNLVHVDDVCAAVLLSLQYASRSPDASPVPAPVFNLTGDDSPRWNRYFVDLALALGAGAA 247 SNLV++DDV AAVL L+ +P A +NL +P WN YF+ A AL A Sbjct: 179 SNLVYIDDVVAAVLAGLR--------APTGAAAYNLAMAGAPDWNGYFLAYARALDAVPL 230 Query: 248 PRISPLRLKLDARLGTLFIRVLQRLARAAGKSGRGLPVALSPSFLRLWQQQLRIDGQRAR 307 RI RLK++ L +++ + R + G LP + PS RLW+Q +R+ RA Sbjct: 231 KRIGARRLKIETHLLAPALKIAEIGLR---RVGVRLPPPIPPSLARLWRQPIRLVSTRAE 287 Query: 308 SVLGFAPRPYAQGLAESAQWA 328 LG QGLA + A Sbjct: 288 QQLGLHWTSLQQGLAATVAAA 308 >ref|ZP_06308623.1| Oxidoreductase (hgdA) [Cylindrospermopsis raciborskii CS-505] gb|EFA69436.1| Oxidoreductase (hgdA) [Cylindrospermopsis raciborskii CS-505] Length = 360 Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 24/243 (9%) Query: 88 EAALQTSRPRIVHMSSMAVYG-NQEGCLNEDSPLDPAASWYAQAKCEAE-EHMKVYAEAG 145 +AA Q +H+SS VYG N + E L + Y Q K EAE E +K+ + Sbjct: 128 QAAKQAKVKTFIHLSSALVYGFNYTPNVAETETLSGDNNPYCQTKIEAEIEILKLNSPPD 187 Query: 146 HPLVMLRPGCVYGPGSDMWVEQMARLVAAGRLGDLGASGEGWSNLVHVDDVCAAVLLSLQ 205 + ++R G VYGPGS W+ + L+ +L G+G N ++VD++ A+ L++ Sbjct: 188 FGVTIIRAGDVYGPGSVPWIVRPV-LMMRQKLFAYPNDGKGVMNHLYVDNLIDAIFLAM- 245 Query: 206 YASRSPDASPVPAPVFNLTGDDSPRWNRYFVDLALALGAGAAPRISPLRLKLDARLGTLF 265 A VFN+T ++ W YF LA G P+ + L LF Sbjct: 246 -------AQQTYGEVFNITDGENTSWKEYFTHLAAMEGL-------PIPMSLPKEEMRLF 291 Query: 266 IRVLQRLARAAGKSGRGLPVALSPSFLRLWQQQLRIDGQRARSVLGFAPRPYAQ-GLAES 324 ++V R G+ V + P + + +ARS+L + P+ + G+ + Sbjct: 292 LKV-----RNQGQKLFRKKVDILPESVDFMSRPYSYSIAKARSILNYQPKISLEVGMNTT 346 Query: 325 AQW 327 QW Sbjct: 347 HQW 349