BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1340.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003675064.1| hypothetical protein M301_2119 [Methylotener...    86   1e-15
ref|ZP_08768696.1| hypothetical protein ThimaDRAFT_0433 [Thiocap...    65   3e-09
ref|ZP_04576194.1| predicted protein [Oxalobacter formigenes HOx...    55   5e-06

>ref|YP_003675064.1| hypothetical protein M301_2119 [Methylotenera versatilis 301]
 gb|ADI30487.1| hypothetical protein M301_2119 [Methylotenera versatilis 301]
          Length = 137

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 13/145 (8%)

Query: 1   MYKLRIEKDAQADIKNLIAEGGKARADAFKIVAFLEELKGNRLWLEELLTRKF---EHER 57
           M+ L I  D + DI   +A   K+   A K+VAF E+L  N+ +L  LL       + + 
Sbjct: 1   MFNLNILPDVKKDI---LAIKVKSNTAAIKLVAFFEQLNNNQEFLGHLLEHNHGEPDKDA 57

Query: 58  FDVDRFLEYWNQGLDIWRLKVFEFVSARNRSYPLPLRVIYCY--DQQSLAFRVLAVCKRD 115
           F+V ++  YWN G ++WRLK+F+       +  L  RVIY Y  +++   F +LAV  RD
Sbjct: 58  FNVSKWQAYWNLGYNLWRLKLFDL-----ENVGLRYRVIYAYALEKRIPTFYILAVVHRD 112

Query: 116 FDYQPDHEQTKRICSLYDSLGLPKH 140
           FDY P +E TKR+   Y  LG+  H
Sbjct: 113 FDYDPTNEITKRLIQTYIKLGIGNH 137


>ref|ZP_08768696.1| hypothetical protein ThimaDRAFT_0433 [Thiocapsa marina 5811]
 gb|EGV20655.1| hypothetical protein ThimaDRAFT_0433 [Thiocapsa marina 5811]
          Length = 140

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 2   YKLRIEKDAQADIKNL--IAEGGKARADAFKIVAFLEELKGNRLWLEELLTRKFEHER-- 57
           Y + I +DA+ D++ L  + E G A  D F     LEE   ++  L+ LL  ++      
Sbjct: 9   YSMSIHEDAEKDLEALYEVDEKGAAGIDVF-----LEEAASSQTVLDHLLENRYRSYDAG 63

Query: 58  --FDVDRFLEYWNQGLDIWRLKVFEFVSARNRSYPLPLRVIYCYDQQSLAFRVLAVCKRD 115
             F+V R+   W     +WRL++F F +    SY    RVIY +  +   + +L +  RD
Sbjct: 64  FDFEVRRWESLWKH-YGLWRLRLFGF-AGDAASY----RVIYAFHGKQRRYYILGIVPRD 117

Query: 116 FDYQPDHEQTKRICSLYDSLGLP 138
           FDY P H  T+RI + Y +LG+P
Sbjct: 118 FDYDPKHHFTQRIVNSYQALGIP 140


>ref|ZP_04576194.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gb|EEO27156.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 143

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 11/114 (9%)

Query: 31  IVAFLEELKGNRLWLEELLTRKFEHER---FDVDRFLEYWNQGLDIWRLKVFEFVSARNR 87
           I AFL+EL+ +   L+EL     EH     F+V   + + N+G +++R++    ++ R  
Sbjct: 36  INAFLDELENSPKVLDELTKWSAEHNSNPMFNVKAIVAFQNKGFNLYRIRP---LAKRIN 92

Query: 88  SYPLPLRVIYCYDQQSLAFRVLAVCKRD-FDYQPDHEQTKRICSLYDSLGLPKH 140
            Y    R+IY Y+ Q     +LA+ K++ ++Y+PD   ++RI   YD L LPK+
Sbjct: 93  KY----RIIYAYNGQRDEIYLLAIVKKEEYNYEPDDPISQRIFDEYDELELPKY 142