BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1338.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003675065.1| XRE family transcriptional regulator [Methyl...    68   5e-10
emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As]          62   4e-08

>ref|YP_003675065.1| XRE family transcriptional regulator [Methylotenera versatilis 301]
 gb|ADI30488.1| transcriptional regulator, XRE family [Methylotenera versatilis
           301]
          Length = 147

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 61/96 (63%)

Query: 20  LDIDDFISQLSKEDGAEEELAESRRWLAGAIERDESALKKLRLNAGLSQKRLAELVGLRQ 79
           + +DDF++ L  +    E L E R+W+A +  +D ++L KLRL  G SQK+LAE +  +Q
Sbjct: 51  VSMDDFLADLESDSDFSESLPEGRKWVADSFYKDNNSLSKLRLERGWSQKQLAEKLNTKQ 110

Query: 80  PNISEIESGQRTPSVPTILRLKEVLGVSGDDLLKAL 115
           P I+ IE+G     + TI +L +V G+S  ++++A+
Sbjct: 111 PYIARIENGIDDIQLSTIKKLAKVFGLSIVEIIEAV 146


>emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As]
          Length = 159

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 23  DDFISQLSKEDGAEEELAESRRWLAGAIERDESALKKLRLNAGLSQKRLAELVGLRQPNI 82
           D  + +L +   +  +L E R+W+A    +D   L  LRL AGLSQ++L E  G  QP++
Sbjct: 54  DQLLDELDQNADSAAQLQEGRKWVAENFYQDRPTLASLRLAAGLSQRQLGEKCGWEQPHV 113

Query: 83  SEIESGQRTPSVPTILRLKEVLGVSGDDLLKA 114
           S  ESG+  P++   + L   LGV  D   +A
Sbjct: 114 SRYESGKHEPTLTVAMTLAAALGVGLDRFAEA 145