BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1337.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04578456.1| predicted protein [Oxalobacter formigenes OXC...    78   4e-13
ref|ZP_08768694.1| hypothetical protein ThimaDRAFT_0431 [Thiocap...    76   1e-12
emb|CAZ88139.1| hypothetical protein THI_1455 [Thiomonas sp. 3As]      75   5e-12
ref|YP_001992722.1| hypothetical protein Rpal_3748 [Rhodopseudom...    70   9e-11
ref|NP_948665.1| hypothetical protein RPA3326 [Rhodopseudomonas ...    69   2e-10

>ref|ZP_04578456.1| predicted protein [Oxalobacter formigenes OXCC13]
 gb|EEO29429.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 195

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 14/152 (9%)

Query: 3   NRQIYVIYCDDIRVEMGNKQSLMGVYNTELMVPHLPISLPKLAICVRVFTPADQPFKEIF 62
           NR+   ++ DDIR E+G K S++GVYNT L +      +PKLAI +  +T  D PFK++F
Sbjct: 42  NRKYDCLFADDIRNEIGGKHSIIGVYNTVLSLDSAQTLIPKLAISLNCYTDFDHPFKQLF 101

Query: 63  IKAMLDDQVLGEAPADPLLFEQMKMSPAFEEDGKSVCYGEISIVMAF---------APFV 113
           +  MLDD V+ +        E+     +F E+ K +    I +   F          P V
Sbjct: 102 VMVMLDDAVISQNELPAQFLEK-----SFNENKKMIEECGIPLASQFYRATANIHLNPLV 156

Query: 114 IPHECRLKIHVTIDGELFKGPPLLLRTPRENE 145
           I  +  LK+ V  DGE      L+LR P + E
Sbjct: 157 IKLQAILKVVVVADGEEKTVGNLILRVPAQQE 188


>ref|ZP_08768694.1| hypothetical protein ThimaDRAFT_0431 [Thiocapsa marina 5811]
 gb|EGV20653.1| hypothetical protein ThimaDRAFT_0431 [Thiocapsa marina 5811]
          Length = 143

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 1   MNNRQIYVIYCDDIRVEMGNKQSLMGVYNTELMVPH-LPISLPKLAICVRVFTPADQPFK 59
           M  RQ+ VIYCDD+R E+GNKQS +GVY  +L+V   LP+ LPKL +   +  P      
Sbjct: 1   MTGRQLEVIYCDDVRQEIGNKQSFIGVYLGDLIVAEALPVVLPKLCLVSTLILPKSDDVT 60

Query: 60  EIFIKAMLDDQVLGEAPADPLLFEQMKMSPAFEEDGKSVCYGEISIVMAFAPFVIPHECR 119
              I+ M  D  L E  +D LL    ++     E+        I++V+  +PF +  E  
Sbjct: 61  SARIRIMQGDHCLLE--SDGLLPPSEEVRSTNPEEVPEEQLLRIALVVVLSPFQVDEETV 118

Query: 120 LKIHVTIDGELFKGPPLLLRTPREN 144
           L++   +DG    G PL +R  R +
Sbjct: 119 LRVVAEVDGAELIGRPLRIRGARSD 143


>emb|CAZ88139.1| hypothetical protein THI_1455 [Thiomonas sp. 3As]
          Length = 168

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 1   MNNRQIYVIYCDDIRVEMGNKQSLMGVYNTELMVPHLPISLPKLAICVRVFTPADQPFKE 60
           M +R ++ I+CDDIR+E+GNK S MGV+   +++P LP  LP+LA+ + V TP ++PFK 
Sbjct: 1   MTDRYVHAIWCDDIRLEVGNKPSFMGVFTGGILLPALPTVLPRLAVYIWVNTPVERPFKS 60

Query: 61  IFIKAMLDDQVLGEAPADPLLFEQMKMSPAFEEDGKSVCYGEISIVMAFAPFV-----IP 115
           + I+   DD          LL E    SP  + D       + +  +  A F      +P
Sbjct: 61  LRIRITRDDGF--------LLMEVRPESPPAQSDVALHSRPDSTRQVVMAGFSLGGVEVP 112

Query: 116 HECR-LKIHVTIDGELFKGPPL 136
             C+   + V  + E  +GP L
Sbjct: 113 VGCKYFSVFVDTESETLEGPKL 134


>ref|YP_001992722.1| hypothetical protein Rpal_3748 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02247.1| hypothetical protein Rpal_3748 [Rhodopseudomonas palustris TIE-1]
          Length = 161

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 4   RQIYVIYCDDIRVEMGNKQSLMGVYNTELMVPH-LPISLPKLAICVRVFTPADQPFKEIF 62
           R  Y I+CDDIR E G K S +G YN+ + V +  P+SLPKL +   VF+PADQP+K + 
Sbjct: 3   RYGYCIFCDDIRTEAGGKLSFIGCYNSAMFVTNEFPLSLPKLCVHFNVFSPADQPYKSLR 62

Query: 63  IKAML---DDQVLGEAPADPLLFEQMKMSPAFEEDGKSVCYGEISIVMAFAP 111
           ++  L   D  +  E+   P L +Q+ +  +  +D   + Y  ++  + F+P
Sbjct: 63  VRCYLPGEDKPIAEESIEVPALQDQINLLTSLPKDQPMMPYIVVAASLIFSP 114


>ref|NP_948665.1| hypothetical protein RPA3326 [Rhodopseudomonas palustris CGA009]
 emb|CAE28767.1| hypothetical protein RPA3326 [Rhodopseudomonas palustris CGA009]
          Length = 161

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 4   RQIYVIYCDDIRVEMGNKQSLMGVYNTELMVPH-LPISLPKLAICVRVFTPADQPFKEIF 62
           R  Y I+CDDIR E G K S +G YN+ + V +  P+SLPKL +   VF+PADQP+K + 
Sbjct: 3   RYGYCIFCDDIRTEAGGKLSFIGCYNSAMFVTNEFPLSLPKLCVHFNVFSPADQPYKSLR 62

Query: 63  IKAML---DDQVLGEAPADPLLFEQMKMSPAFEEDGKSVCYGEISIVMAFAPFVIPHECR 119
           ++  L   D  +  E+   P L +Q+ +  +  +D   + +  ++  + F+P  I     
Sbjct: 63  VRCYLPGEDKPIAEESIEVPALQDQINLLTSLPKDQPMMPFIVVAASLIFSPCEIKSPGM 122

Query: 120 LKIHVTID 127
           + +   I+
Sbjct: 123 IHVRAVIN 130