BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1336.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001063328.1| hypothetical protein BURPS668_A2334 [Burkhol...    54   1e-05

>ref|YP_001063328.1| hypothetical protein BURPS668_A2334 [Burkholderia pseudomallei 668]
 ref|ZP_02494536.1| hypothetical protein BpseN_34195 [Burkholderia pseudomallei NCTC
           13177]
 gb|ABN87960.1| hypothetical protein BURPS668_A2334 [Burkholderia pseudomallei 668]
          Length = 106

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 14/103 (13%)

Query: 1   MTLLLKIWPWLVGAAGLIAGLFMRQQAKTTKAEAAQEVAETKQKSAEREAAAAQSGANSV 60
           + +LLK  PWL+  AG++ G+F  QQA+T  A+A Q+ AE +  +A      AQS     
Sbjct: 4   IPILLKFGPWLLAVAGVLFGMFRHQQARTATAQAGQKTAEAQATAAAAREQVAQSANAEA 63

Query: 61  --------------QERTDVENTIAAAPPGSSAAKLRDNWSRD 89
                         +ER D E  + A P G +  +LRD WSRD
Sbjct: 64  QANADAAQAGAAAAKERNDAETNVGALPAGGAEQQLRDGWSRD 106