BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1334.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003609921.1| peptidase M15A [Burkholderia sp. CCGE1002] >...   210   6e-53
ref|YP_003090199.1| endolysin gp23 [Burkholderia phage KS9] >gi|...   197   6e-49
ref|YP_439263.1| hypothetical protein BTH_II1066 [Burkholderia t...   189   2e-46
ref|YP_002911573.1| peptidase M15A [Burkholderia glumae BGR1] >g...   174   3e-42
ref|YP_004087390.1| peptidase m15a [Asticcacaulis excentricus CB...   152   2e-35

>ref|YP_003609921.1| peptidase M15A [Burkholderia sp. CCGE1002]
 gb|ADG20410.1| Peptidase M15A [Burkholderia sp. CCGE1002]
          Length = 150

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 105/149 (70%), Positives = 123/149 (82%)

Query: 1   MDKLTDHFSLAEMTASETAARKGIDNTPSPAIIKNLTRTAQLLERVRVLLGSKPILVSSG 60
           M +LTDHF+L E+T SETA R+ IDNTPSPAI++NLTRTAQ LE+VR LL S+P+LVSSG
Sbjct: 1   MTRLTDHFTLEELTQSETATRRRIDNTPSPAIVENLTRTAQTLEQVRALLCSRPVLVSSG 60

Query: 61  YRSPALNAAVGGSKTSAHMQGLAADFICPGFGTPLAICQRLDSLGVEFDQLIQEGTWVHI 120
           YRSPALN AVGG+  SAHM GLAADFICPGFG+PL IC+++ +  + FDQLIQEGTWVHI
Sbjct: 61  YRSPALNTAVGGAANSAHMTGLAADFICPGFGSPLEICRKIAASNIPFDQLIQEGTWVHI 120

Query: 121 GLAAEGIKPRRQVLTAKFSSGGTTYGGGL 149
           GLA  G K R+QVLTA F  GGTTY  G+
Sbjct: 121 GLAPGGQKARQQVLTANFGVGGTTYTNGI 149


>ref|YP_003090199.1| endolysin gp23 [Burkholderia phage KS9]
 gb|ACT83034.1| endolysin gp23 [Burkholderia phage KS9]
          Length = 149

 Score =  197 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 98/149 (65%), Positives = 118/149 (79%)

Query: 1   MDKLTDHFSLAEMTASETAARKGIDNTPSPAIIKNLTRTAQLLERVRVLLGSKPILVSSG 60
           M  LT HF+L E+TAS+TA R+GIDNTPSPA+  NL RTA++LERVR +LG +P++++SG
Sbjct: 1   MGNLTAHFTLEELTASDTARRRGIDNTPSPAVAANLRRTAEMLERVRDVLGGRPVIITSG 60

Query: 61  YRSPALNAAVGGSKTSAHMQGLAADFICPGFGTPLAICQRLDSLGVEFDQLIQEGTWVHI 120
           YR+ ALN AVGG  TSAH+ GLAADF+CP FG PL IC+ + +  +EFDQLIQEGTWVHI
Sbjct: 61  YRAAALNRAVGGVPTSAHLSGLAADFVCPKFGAPLDICRAISASSIEFDQLIQEGTWVHI 120

Query: 121 GLAAEGIKPRRQVLTAKFSSGGTTYGGGL 149
           GLA  G KPRRQVLTA F S  TTY  GL
Sbjct: 121 GLAPIGTKPRRQVLTASFGSTSTTYSEGL 149


>ref|YP_439263.1| hypothetical protein BTH_II1066 [Burkholderia thailandensis E264]
 ref|ZP_05590644.1| hypothetical protein BthaA_24643 [Burkholderia thailandensis E264]
 gb|ABC35506.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 149

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/149 (63%), Positives = 116/149 (77%)

Query: 1   MDKLTDHFSLAEMTASETAARKGIDNTPSPAIIKNLTRTAQLLERVRVLLGSKPILVSSG 60
           M  LT HF+L E+TAS+TA R+GIDNTPS A+  NL RTA++LERVR +LG +P+ ++SG
Sbjct: 1   MTNLTAHFTLEELTASDTARRRGIDNTPSAAVTANLRRTAEMLERVRDVLGGRPVRITSG 60

Query: 61  YRSPALNAAVGGSKTSAHMQGLAADFICPGFGTPLAICQRLDSLGVEFDQLIQEGTWVHI 120
           YR+ ALN AVGG  +SAH+ GLAADF+CP  GTPL IC+ + +  +EFDQLIQEGTWVHI
Sbjct: 61  YRAAALNRAVGGVPSSAHLSGLAADFVCPKIGTPLDICRAIRASPIEFDQLIQEGTWVHI 120

Query: 121 GLAAEGIKPRRQVLTAKFSSGGTTYGGGL 149
           GLA  G KPRRQVLTA F S  TTY  G+
Sbjct: 121 GLAPIGAKPRRQVLTASFGSTSTTYSEGI 149


>ref|YP_002911573.1| peptidase M15A [Burkholderia glumae BGR1]
 gb|ACR28869.1| peptidase M15A [Burkholderia glumae BGR1]
          Length = 149

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 3   KLTDHFSLAEMTASETAARKGIDNTPSPAIIKNLTRTAQLLERVRVLLGSKPILVSSGYR 62
           +LTDHF+L E+TAS+ A  + IDNTPS A ++NL R AQ LE+ RVLLG KP+ ++SGYR
Sbjct: 2   QLTDHFTLEELTASDVARTRQIDNTPSAATVENLRRLAQTLEQARVLLGGKPMQITSGYR 61

Query: 63  SPALNAAVGGSKTSAHMQGLAADFICPGFGTPLAICQRLDSLGVEFDQLIQE-GTWVHIG 121
           SPALN AVGG  +SAH+ GLAADF+CP FG PL + ++L +  + FDQLI E G WVHIG
Sbjct: 62  SPALNRAVGGVASSAHLAGLAADFVCPKFGAPLDVVRKLAASNLAFDQLIHEGGRWVHIG 121

Query: 122 LAAEGIKPRRQVLTAKFSSGGTTYGGG 148
           L A+G+KPRRQVLTA FS    +Y  G
Sbjct: 122 LTADGVKPRRQVLTAHFSGETASYTVG 148


>ref|YP_004087390.1| peptidase m15a [Asticcacaulis excentricus CB 48]
 gb|ADU13239.1| Peptidase M15A [Asticcacaulis excentricus CB 48]
          Length = 361

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 98/142 (69%), Gaps = 4/142 (2%)

Query: 4   LTDHFSLAEMTASETAARKGIDNTPSPAIIKNLTRTAQLLERVRVLLGSKPILVSSGYRS 63
           L+ +F+L E+T S+ A R GI+N P+P  + NL  TAQ +++VR LLG +PI V SGYR 
Sbjct: 219 LSQYFTLEELTQSDIAERNGIENMPTPEHLNNLKDTAQRMDKVRALLG-QPITVRSGYRG 277

Query: 64  PALNAAVGGSKTSAHMQGLAADFICPGFGTPLAICQRLDSLGVEFDQLIQEGTWVHIGLA 123
           PALNA +GGSKTSAHM G A DF+   FGTPL IC+++ +  + FDQLI EGTWVHIG +
Sbjct: 278 PALNAKIGGSKTSAHMIGRAVDFVSQRFGTPLDICRKIMASDIVFDQLIYEGTWVHIGFS 337

Query: 124 AEGIKPRRQVLTAKFSSGGTTY 145
                PRRQ L A FS   T Y
Sbjct: 338 D---TPRRQALRADFSVTPTAY 356