BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1330.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002535548.1| conserved hypothetical protein [Ricinus comm...    66   2e-09
ref|ZP_06842915.1| hypothetical protein BCh11DRAFT_4182 [Burkhol...    59   2e-07

>ref|XP_002535548.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF26835.1| conserved hypothetical protein [Ricinus communis]
          Length = 397

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 43/69 (62%)

Query: 43  ASDLWAARQAEALVALQANDLVAIRCAKSGVIYPADWRAYDEALRAIVAAPSGDARAALP 102
           A+  W++ QA A   L ++DL  +RC ++G+  P++W  Y + LRA++ A SGD    LP
Sbjct: 329 AAGAWSSYQASAKTELDSSDLTILRCYENGIPVPSEWATYRKLLRAVIGAASGDPTQPLP 388

Query: 103 QRPEYPVET 111
            RP++P  T
Sbjct: 389 MRPQFPAGT 397


>ref|ZP_06842915.1| hypothetical protein BCh11DRAFT_4182 [Burkholderia sp. Ch1-1]
 gb|EFG69369.1| hypothetical protein BCh11DRAFT_4182 [Burkholderia sp. Ch1-1]
          Length = 124

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 16  SEEFSFLLPPG--CVQITAEEAAALLMPSASDLWAARQAEALVALQANDLVAIRCAKSGV 73
           S E SF+  P     QI + EA       +   W+  Q+ A  AL  +D+  +RC ++ V
Sbjct: 27  SSEGSFIFDPTMTSAQIASVEAVYAAHDPSKPSWSNFQSLAKAALADSDVTVMRCYENAV 86

Query: 74  IYPADWRAYDEALRAIVAAPSGDARAALPQRPEYPVET 111
             P++W AY ++LRA+V+A SGDA   LP +P YP  T
Sbjct: 87  ALPSNWAAYRKSLRALVSATSGDASQPLPPKPSYPAGT 124