BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1327.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858095.1| baseplate J family protein [Burkholderia phy... 323 3e-86 ref|YP_557984.1| putative bacteriophage tail protein GP47,Mu-lik... 314 1e-83 emb|CCD30264.1| Baseplate J family protein [Candidatus Glomeriba... 262 6e-68 ref|ZP_04617665.1| hypothetical protein yruck0001_9630 [Yersinia... 259 6e-67 ref|YP_069819.1| bacteriophage protein [Yersinia pseudotuberculo... 249 6e-64 >ref|YP_001858095.1| baseplate J family protein [Burkholderia phymatum STM815] gb|ACC71049.1| Baseplate J family protein [Burkholderia phymatum STM815] Length = 367 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 224/380 (58%), Positives = 273/380 (71%), Gaps = 14/380 (3%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M ++RPTL+DLQ QV +DI ++ PG+D LLRFS LRI GRV A L +L YGY+D+I+KQA Sbjct: 1 MPFSRPTLTDLQTQVASDIASSVPGSDPLLRFSNLRITGRVQAGLAHLHYGYIDWISKQA 60 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGTISAGTQLVRGDGVAYVTTTS 120 VPWT+TDEYLAGWGALK Y K AT A+ +VTF +SGTI AGTQ+VRGDG Y T Sbjct: 61 VPWTSTDEYLAGWGALKNTYLKEATL-ATGSVTFPGSSGTILAGTQVVRGDGFIYTTNAD 119 Query: 121 GTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGVQSTGVATTAFVGGADVESQDDF 180 T SG+S+TVA A GAAGNCDAGT LTL TAV G+QS G A AF GGADVE+QD F Sbjct: 120 ATVSGSSVTVAVTASTPGAAGNCDAGTALTLGTAVTGIQSGGTAAAAFTGGADVETQDAF 179 Query: 181 SGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYFMMDDVESAHAG 240 GRVM+ +Q+SPQGG+ DY TWA AGVTRAW P GFGAGTVVVY M+D ESAH G Sbjct: 180 YGRVMSAFQTSPQGGAKGDYATWALQVAGVTRAWVAPNGFGAGTVVVYVMLDSAESAHNG 239 Query: 241 FPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHILNFKVSGLSSA 300 FPQGTNGVA E A ATGDQL +AN LY+L+P TALVY C+P + +NF ++G +S Sbjct: 240 FPQGTNGVAAGET-RAAAATGDQLTVANYLYSLQPVTALVYVCAPTPNTVNFTLTGTTSW 298 Query: 301 STSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVIDEIDGVIGSTTTV 360 ST+T+ A+SAA+A VL NG+P GTV+ ++IE A+++++ AG VI T Sbjct: 299 STTTKNAVSAAIAGVLLSNGAP-GGTVNMSDIESAIAAVSGTAGFVI-----------TS 346 Query: 361 IPGNVISPLGYLPTLGTVVF 380 GN+ S G LP LGT+ F Sbjct: 347 PTGNITSATGALPVLGTMTF 366 >ref|YP_557984.1| putative bacteriophage tail protein GP47,Mu-like [Burkholderia xenovorans LB400] gb|ABE29932.1| Putative bacteriophage tail protein GP47,Mu-like protein [Burkholderia xenovorans LB400] Length = 386 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 196/386 (50%), Positives = 257/386 (66%), Gaps = 7/386 (1%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M Y R TL+ ++ ADI AA G+D LLRF+ L+I+G VLA + N YGYLD+IAKQ Sbjct: 1 MPYARKTLAQIRSDAMADIAAALQGSDPLLRFAALKIIGVVLAGMTNEEYGYLDWIAKQT 60 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGTI-SAGTQLVRGDGVAYVTTT 119 P+TA DEYL WGALKKVY+K A+ +AS + TF +G + GT +VR DG Y T+ Sbjct: 61 NPFTADDEYLEAWGALKKVYRKDAS-AASLSATFTGVAGKLLDDGTPVVRSDGATYTTSG 119 Query: 120 SGTSSGTSITVAAEAVDAGAAGNCDAGTKLTLATAVDGVQSTGVATTAFVGGADVESQDD 179 + T GTS+TV A AGAAGN D GT + L AVDG+QSTG GAD+E Q+D Sbjct: 120 TQTVVGTSVTVTIVADVAGAAGNADPGTVVALDIAVDGIQSTGAVIGTVSSGADIEDQED 179 Query: 180 FSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYFMMDDVESAHA 239 + RV+A YQ PQGG+ DY WAT AGVTRAW P GFGAGTVVVY M+DD ++AH Sbjct: 180 YRARVLAKYQQPPQGGAAPDYVEWATDVAGVTRAWCAPNGFGAGTVVVYVMLDDAQAAHG 239 Query: 240 GFPQGTNGVATAEK-----RNATKATGDQLILANALYTLRPATALVYACSPEKHILNFKV 294 GFPQGT+GV+ ++ T ATGDQL++A+A+ TL+P TALV+ CSP +++L+F++ Sbjct: 240 GFPQGTDGVSQHDQGPGGLPRGTVATGDQLVVADAIVTLQPGTALVWICSPVENVLSFEL 299 Query: 295 SGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVIDEIDGVI 354 +G + ST+ R A+ A ++DV +RNG P GT+DR++I A++++ AG VI I GVI Sbjct: 300 TGSAGWSTAIRNAVKAQISDVFFRNGDPRGGTIDRSDINSAIAAVPGTAGFVITSITGVI 359 Query: 355 GSTTTVIPGNVISPLGYLPTLGTVVF 380 T T P N+ G LP LG V F Sbjct: 360 SGTPTTYPANITGSFGSLPVLGEVTF 385 >emb|CCD30264.1| Baseplate J family protein [Candidatus Glomeribacter gigasporarum BEG34] Length = 369 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 183/387 (47%), Positives = 227/387 (58%), Gaps = 24/387 (6%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M YTRPTL++L++QV D+ G DALLRFS LRI+G AAL +L YGYLD+IA+Q Sbjct: 1 MPYTRPTLTELRQQVAQDL-----GVDALLRFSNLRIVGDAQAALAHLHYGYLDWIARQG 55 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSGTISAGTQLVRGDGVAYVTTTS 120 VP+TA DEYL GW ALK VY+K A +A A I G LVR DG+ + T TS Sbjct: 56 VPFTAEDEYLEGWAALKGVYRKPAQAAAGRVTFTGAPGAVIPKGAPLVRSDGMTFTTQTS 115 Query: 121 G--TSSGT-SITVAAEAVDAG---AAGNCDAGTKLTLATAVDGVQSTGVATTAFVGGADV 174 + GT ++ V AE+ AG AAGN GT +TL TA+ GVQS G+ T GG D+ Sbjct: 116 ALVDAEGTATVEVQAESDPAGLSGAAGNTPVGTPMTLGTAIAGVQSNGLVHTPLTGGTDL 175 Query: 175 ESQDDFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYFMMDDV 234 ES D R++A YQ PQGGS DY WA GVTRAW P GFG GTVVVY M D Sbjct: 176 ESDDSLRRRMLAAYQQPPQGGSQTDYVQWALQVEGVTRAWCAPQGFGIGTVVVYIMCDQS 235 Query: 235 ESAHAGFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHILNFKV 294 ++ AGFPQG +GVA E R A+GDQL +AN LY L+P TALVY SP H ++ ++ Sbjct: 236 QAEQAGFPQGEDGVAQDEPR-GVAASGDQLRVANHLYVLQPVTALVYVVSPLAHRVDVEI 294 Query: 295 SGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVIDEIDGVI 354 SGL +A+ R AI+AA+ V R G P LSSI +A + +I Sbjct: 295 SGLPNAAPEIREAIAAAIRAVFSREGQPGRPVY--------LSSIESAIAAIAGTAGFII 346 Query: 355 GSTTTVIPGNVISPLGYLPTLGTVVFL 381 S GN+ + G LP LG V +L Sbjct: 347 QSPV----GNIANGPGQLPVLGEVRYL 369 >ref|ZP_04617665.1| hypothetical protein yruck0001_9630 [Yersinia ruckeri ATCC 29473] gb|EEP97819.1| hypothetical protein yruck0001_9630 [Yersinia ruckeri ATCC 29473] Length = 378 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 227/358 (63%), Gaps = 14/358 (3%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M + RPTL++L+++ K+ I++ T +LLRFS L ++ A L +L YGYLDYIA QA Sbjct: 1 MPFNRPTLTELRQRNKSYIQSELKTTGSLLRFSNLGVISDADAGLAHLHYGYLDYIALQA 60 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSG-TISAGTQLVRGDGVAYVTTT 119 P+ ATDEYLAGW ALK V+QK A + P+V F T+G TI+AG L R DG Y+ + Sbjct: 61 TPFHATDEYLAGWAALKDVFQKPANPATCPSVLFTGTAGRTIAAGAVLNRADGYQYILDS 120 Query: 120 ------SGTSSGTSITVAAEAVD----AGAAGNCDAGTKLTLATAVDGVQSTGVATTAFV 169 +GT +G+ + + +D G AGN DAGT LTL AV+G+ S +AT Sbjct: 121 DVTIAPAGTGTGSVTAILSSPLDDVTGGGVAGNADAGTLLTLDVAVEGIPSAAIATVKIA 180 Query: 170 GGADVESQDDFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYF 229 GGAD+ES+D F R++ YQS+PQGG+ +DY WA A GVTR W GAGTV +YF Sbjct: 181 GGADIESEDAFRSRMLLAYQSTPQGGNDNDYRLWALAVPGVTRCWVARRLMGAGTVGIYF 240 Query: 230 MMDDVESAHAGFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHI 289 M D + + GFPQG++G++ E+ A KATGDQL +A+A+Y L+P ALVYAC+P K Sbjct: 241 MCDG--NDNGGFPQGSDGISQREQWGAIKATGDQLRVADAIYPLQPIIALVYACAPTKKP 298 Query: 290 LNFKVSGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVI 347 ++F ++G++ A ++T AI+AA+ +V + G P G + + + A+ + +G V+ Sbjct: 299 IDFVIAGIAGAGSATVEAINAAIDEVFFEEGEP-GGKIYWSSLLLAIGDVPGTSGFVL 355 >ref|YP_069819.1| bacteriophage protein [Yersinia pseudotuberculosis IP 32953] ref|YP_001401698.1| baseplate J-like protein [Yersinia pseudotuberculosis IP 31758] ref|YP_001721540.1| baseplate J family protein [Yersinia pseudotuberculosis YPIII] emb|CAH20525.1| putative bacteriophage protein [Yersinia pseudotuberculosis IP 32953] gb|ABS46257.1| baseplate J-like protein [Yersinia pseudotuberculosis IP 31758] gb|ACA69087.1| Baseplate J family protein [Yersinia pseudotuberculosis YPIII] Length = 378 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 163/392 (41%), Positives = 223/392 (56%), Gaps = 25/392 (6%) Query: 1 MAYTRPTLSDLQEQVKADIEAAQPGTDALLRFSPLRILGRVLAALINLVYGYLDYIAKQA 60 M + RPTLS+L+++ ++ I++ LLRFS + ++ A + +L YGYLDYIA+QA Sbjct: 1 MPFNRPTLSELRQRNQSYIQSELKTGGNLLRFSNIGVISDADAGMAHLHYGYLDYIARQA 60 Query: 61 VPWTATDEYLAGWGALKKVYQKAATKSASPTVTFQATSG-TISAGTQLVRGDGVAY---- 115 P+ ATDEYLA WGALK V++KAA + S V F +G I AG L R DG Y Sbjct: 61 TPYNATDEYLAAWGALKDVFRKAANPATSNEVRFSGIAGRVIPAGRLLNRADGYQYQLDK 120 Query: 116 --VTTTSGTSSGTSITVAAEAVD----AGAAGNCDAGTKLTLATAVDGVQSTGVATTAFV 169 + G++ G + +D G GN AGT LTL A+DGVQ+T A T Sbjct: 121 EVIIAEQGSALGEITAILPSPLDDATGGGNRGNSPAGTVLTLDIAIDGVQATATALTKIS 180 Query: 170 GGADVESQDDFSGRVMAGYQSSPQGGSVDDYPTWATAQAGVTRAWANPVGFGAGTVVVYF 229 GGAD+ES+D F R++ YQ+ PQGG+ DY +WA A GVTR W GAGTV VY Sbjct: 181 GGADIESEDAFRSRMLLAYQNVPQGGNDTDYQSWALAVPGVTRCWVKRRLMGAGTVGVYI 240 Query: 230 MMDDVESAHAGFPQGTNGVATAEKRNATKATGDQLILANALYTLRPATALVYACSPEKHI 289 M DD + H GFPQGT+G+++ E+ A KATGDQ +A+A+Y +P ALVY C+P Sbjct: 241 MCDD--NDHGGFPQGTDGISSLEEWGAVKATGDQGRVADAIYPQQPIIALVYVCAPVAQA 298 Query: 290 LNFKVSGLSSASTSTRAAISAALADVLYRNGSPLAGTVDRTEIEGALSSIAAAAGGVIDE 349 ++F +SG+S A ++T AAI+ A+ +V + G P + SS+ A G E Sbjct: 299 IDFVISGISYADSTTTAAINTAIDEVFFTEGQPGGKIL--------WSSLLLAIG----E 346 Query: 350 IDGVIGSTTTVIPGNVISPLGYLPTLGTVVFL 381 + G G N+ G LP GTV +L Sbjct: 347 VPGSGGFIMASPSANIELQTGKLPVRGTVSYL 378