BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1324.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858098.1| Mu P family protein [Burkholderia phymatum S... 246 6e-63 ref|YP_557981.1| putative bacteriophage tail protein GpP,Mu-like... 220 3e-55 ref|ZP_04622955.1| Mu-like prophage tail protein gpP [Yersinia k... 216 5e-54 ref|YP_001721840.1| Mu P family protein [Yersinia pseudotubercul... 215 8e-54 ref|ZP_04617667.1| Bacteriophage Mu P protein [Yersinia ruckeri ... 214 2e-53 >ref|YP_001858098.1| Mu P family protein [Burkholderia phymatum STM815] gb|ACC71052.1| Mu P family protein [Burkholderia phymatum STM815] Length = 363 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 141/357 (39%), Positives = 207/357 (57%), Gaps = 17/357 (4%) Query: 5 DEIALHVGSKAVSGWTEVNVTHSIQQIPNVWQASFTEVSPDEVRLLQLNPGDYAELYCGS 64 D I L +G +SGWT + T I++ P+ ++ TE+ P + + + GD L G Sbjct: 4 DGILLSIGDYMLSGWTSLRCTRGIERFPSDFELGMTELFPGQANDVVVQEGDPFILTIGL 63 Query: 65 TLMVAGYVDIVQNEVSAGAHAVRMMGRGKCMDLIDASAEWPNGQFANCTVLDLAKNLVKP 124 +V GY+D V ++A H +R+ GRGKC DL+D +A+WPNGQ +NCT D+A L P Sbjct: 64 DPVVTGYIDRVVPSINANMHEIRVTGRGKCQDLLDCAAQWPNGQISNCTAADIAAKLAVP 123 Query: 125 FGTNTETGESHPILVHCDIADLVRVPQLNLILSESAHDILDRVARYSGVMLYEDRFGDLV 184 + I V+CD+ L +PQ N++L E+A++I++R +R+S +++YED G L Sbjct: 124 YD----------ITVNCDVTGLPIIPQQNIMLGETAYEIIERSSRFSALLVYEDPDGSLR 173 Query: 185 IGRAGSTKMATPLMQGINIQSARVRRSADQRFDKYTAFISSIWPALDGGDGGNLIGGTYD 244 + RAG+ MA+ + +G+N++SA V RS DQR+ + A + D + D Sbjct: 174 LTRAGTEVMASGVQEGVNMESAAVTRSMDQRYSEIMAVMIGTNNLQDLNAVDAPVFTATD 233 Query: 245 VGVKRHRPRHIIAEAVTGFQDIAMRRAIWEMNRRIGMSEVVSLTVDTWFDEKGTLWTANS 304 VKRHR R +IAEA D+ +RA+WE+ RR G SEVV+LTVD W D G LW N Sbjct: 234 PNVKRHRRRVVIAEAGQLGWDVGKQRALWEVARRRGRSEVVTLTVDNWRDVDGNLWEPNK 293 Query: 305 LVDILIPSLGIR-----TVKT-LLIVSVTFVKNAERGTVADMTLMDASAYSIQPVAL 355 L+D+LIPSL + TV LI VT+ E GT A++TLM A++ QPV + Sbjct: 294 LIDVLIPSLKVAGDQAGTVPVRYLIAEVTYHLGLE-GTHAELTLMAPEAFTPQPVLI 349 >ref|YP_557981.1| putative bacteriophage tail protein GpP,Mu-like [Burkholderia xenovorans LB400] gb|ABE29929.1| Putative bacteriophage tail protein GpP,Mu-like protein [Burkholderia xenovorans LB400] Length = 357 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 197/351 (56%), Gaps = 11/351 (3%) Query: 5 DEIALHVGSKAVSGWTEVNVTHSIQQIPNVWQASFTEVSPDEVRLLQLNPGDYAELYCGS 64 D++ L + S +V GWT++ VT I+++P+ ++ TE PD++ + + PG+ + G+ Sbjct: 3 DDLTLIMDSASVGGWTKIRVTRGIERLPSDFEIEMTEKYPDDLEQISVIPGESCSVAIGT 62 Query: 65 TLMVAGYVDIVQNEVSAGAHAVRMMGRGKCMDLIDASAEWPNGQFANCTVLDLAKNLVKP 124 +++ GYVD V +H +R++GRGKC DL+D SAEW GQ + L +A+ L P Sbjct: 63 DVVITGYVDRVIPGFDRKSHRIRVVGRGKCQDLVDCSAEWEGGQISGSNALQIAQRLAAP 122 Query: 125 FGTNTETGESHPILVHCDIADLVRVPQLNLILSESAHDILDRVARYSGVMLYEDRFGDLV 184 +G I V D D +PQ+NL++ E+A ++++R++RY+G++ Y+ G+L Sbjct: 123 YG----------ITVTSDGNDGPSIPQINLMIGETAFEVIERISRYAGLLAYDLPDGNLR 172 Query: 185 IGRAGSTKMATPLMQGINIQSARVRRSADQRFDKYTAFISSIWPALDGGDGGNLIGGTYD 244 + RAG ++ L QG N++ A S D R+ + A++ ++ D G + D Sbjct: 173 LARAGVDSHSSGLAQGQNVEEAEFEWSTDLRYSEIDAYLLTMQTMGDAGANLVPVATATD 232 Query: 245 VGVKRHRPRHIIAEAVTGFQDIAMRRAIWEMNRRIGMSEVVSLTVDTWFDEKGTLWTANS 304 V RHR +I++E V ++IA RA WE RR G S++V VD+W D G LWT N Sbjct: 233 ATVDRHRKLYIVSEQVQAGRNIAQERANWEAARRAGRSQMVHARVDSWRDGDGMLWTPNM 292 Query: 305 LVDILIPSLGIRTVKTLLIVSVTFVKNAERGTVADMTLMDASAYSIQPVAL 355 LV + +P L I +LI VT++ + + GT A + LM A+ +P L Sbjct: 293 LVPVALPFLKIPEETFMLISEVTYLLD-DDGTHAQLVLMPPDAFKPEPTIL 342 >ref|ZP_04622955.1| Mu-like prophage tail protein gpP [Yersinia kristensenii ATCC 33638] gb|EEP92454.1| Mu-like prophage tail protein gpP [Yersinia kristensenii ATCC 33638] Length = 343 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 125/351 (35%), Positives = 197/351 (56%), Gaps = 21/351 (5%) Query: 11 VGSKAVSGWTEVNVTHSIQQIPNVWQASFTEVSPDEVRLLQLNPGDYAELYCGSTLMVAG 70 +G +A++GW+++ VT SI+++P+ ++ S + P +NPGD + G+ ++ G Sbjct: 1 MGGRAITGWSKIQVTRSIEKLPSSFELSLMDRYPASEWQQWVNPGDACVVKLGNDAVLTG 60 Query: 71 YVDIVQNEVSAGAHAVRMMGRGKCMDLIDASAEWPNGQFANCTVLDLAKNLVKPFGTNTE 130 Y+D N++S H V GR KC DL+D SAEWPN + TVL +A+ L +P+G Sbjct: 61 YIDSWDNKISGTTHEVTAKGRSKCQDLVDCSAEWPNSVISQSTVLQIAQKLAEPYG---- 116 Query: 131 TGESHPILVHCDIADLVRVPQLNLILSESAHDILDRVARYSGVMLYEDRFGDLVIGRAGS 190 I V DIAD+ VP+ L E+A +++ V R++ ++ Y+ G+L + R G Sbjct: 117 ------IKVTSDIADMAVVPKFTLNWGETAQAVIEHVTRWAALLYYDQPDGNLYLTRVGK 170 Query: 191 TKMATPLMQGINIQSARVRRSADQRFDKYTAF-ISSIWPALDGGDGGNLIGG---TYDVG 246 K A+ + QG+NI SA + +QRF YT +S+ A GGN I T D Sbjct: 171 RKAASGVEQGVNILSANLHTDINQRFIDYTGVALSNNAVARRSASGGNNISALVRTQDTE 230 Query: 247 V-----KRHRPRHIIAEAVTGFQDIAMRRAIWEMNRRIGMSEVVSLTVDTWFDEKGTLWT 301 + RHR + II E+ +++ W +NR G S+++S+ VD W D LW Sbjct: 231 LAQQLPNRHRNKIIIVESTMNSENLVRNSLDWSINRNNGRSKMLSVQVDHWRDRNNQLWE 290 Query: 302 ANSLVDILIPSLGIRTVKTLLIVSVTFVKNAERGTVADMTLMDASAYSIQP 352 NSL+ I IPS+G++ + L+ SVT++K+A GTVA+MTLM A+++QP Sbjct: 291 TNSLIPITIPSMGLKD-ELWLLSSVTYLKDAN-GTVANMTLMPPEAFAVQP 339 >ref|YP_001721840.1| Mu P family protein [Yersinia pseudotuberculosis YPIII] gb|ACA69387.1| Mu P family protein [Yersinia pseudotuberculosis YPIII] Length = 356 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 193/360 (53%), Gaps = 18/360 (5%) Query: 5 DEIALHVGSKAVSGWTEVNVTHSIQQIPNVWQASFTEVSPDEVRLLQLNPGDYAELYCGS 64 D++ L +G+K ++GW + VT SI+++P+ + S ++ P +NPGD + G Sbjct: 3 DDLTLRIGNKLITGWDNIRVTRSIERLPSDFSLSLMDLYPGSDNQQWVNPGDPCVVNLGD 62 Query: 65 TLMVAGYVDIVQNEVSAGAHAVRMMGRGKCMDLIDASAEWPNGQFANCTVLDLAKNLVKP 124 +++ GY+D +S VR GR KC DL+D SAEWPN + T L +A+ L P Sbjct: 63 DVVLTGYIDRWAPMISGSRREVRATGRSKCQDLVDCSAEWPNNVISQSTALQIAQRLAHP 122 Query: 125 FGTNTETGESHPILVHCDIADLVRVPQLNLILSESAHDILDRVARYSGVMLYEDRFGDLV 184 +G I V D+ DL VPQ L ES+ +I+DR+ R++ ++ Y+ G+L Sbjct: 123 YG----------ITVSTDVIDLDIVPQFTLNWGESSQEIIDRITRWAALLYYDQPDGNLY 172 Query: 185 IGRAGSTKMATPLMQGINIQSARVRRSADQRFDKYTAFISSIW----PALDGGDGGNLIG 240 + R G+ K A+ + QGINI+ A DQRF Y S+ D G G + Sbjct: 173 LTRVGTRKAASGVAQGINIEDAAYNSGMDQRFSDYIGVSMSVSQLQEQVQDAGYGAVTLA 232 Query: 241 GTYD--VGVKRHRPRHIIAEAVTGFQDIAMRRAIWEMNRRIGMSEVVSLTVDTWFDEKGT 298 + D R+R R II E+ +A + WEMNRR G S+ + +TVD+W D+ G Sbjct: 233 RSRDPEAAKMRYRNRIIIVESTMKALKLAQQCIDWEMNRRYGRSKELLVTVDSWRDKDGK 292 Query: 299 LWTANSLVDILIPSLGIRTVKTLLIVSVTFVKNAERGTVADMTLMDASAYSIQPVALYQS 358 LW N+L+ I +P G++ + L+ VT++K+ ++GT A M LM A+++QP Y + Sbjct: 293 LWEPNTLIPIDLPIFGLKD-ELWLLSEVTYLKD-DQGTAAQMVLMPPEAFTVQPYQFYSN 350 >ref|ZP_04617667.1| Bacteriophage Mu P protein [Yersinia ruckeri ATCC 29473] gb|EEP97821.1| Bacteriophage Mu P protein [Yersinia ruckeri ATCC 29473] Length = 350 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 122/356 (34%), Positives = 189/356 (53%), Gaps = 18/356 (5%) Query: 9 LHVGSKAVSGWTEVNVTHSIQQIPNVWQASFTEVSPDEVRLLQLNPGDYAELYCGSTLMV 68 + +G K +SGW +V VT SI+++P+ + S ++ P +NPGD + G ++V Sbjct: 1 MKIGGKLISGWDQVRVTRSIERLPSDFDLSLMDLYPGSDNQQWVNPGDPCVVMLGQDVVV 60 Query: 69 AGYVDIVQNEVSAGAHAVRMMGRGKCMDLIDASAEWPNGQFANCTVLDLAKNLVKPFGTN 128 GY+D +S H VR GR KC DL+D SAEWPN + T L +A+ L P+G + Sbjct: 61 TGYIDRWAPMISKTRHEVRATGRSKCQDLVDCSAEWPNNVISQSTALQIAQKLAAPYGVS 120 Query: 129 TETGESHPILVHCDIADLVRVPQLNLILSESAHDILDRVARYSGVMLYEDRFGDLVIGRA 188 T D+ DL VPQ L ES+ +++DR+ R++ ++ Y+ G L + R Sbjct: 121 VAT----------DVTDLDIVPQFTLNWGESSQEVIDRITRWAALLYYDLPDGSLYLTRV 170 Query: 189 GSTKMATPLMQGINIQSARVRRSADQRFDKYTAFISSIW----PALDGGDGGNLIGGTYD 244 G+ K A+ + QG NI+ A D+RF Y S+ D G G + + D Sbjct: 171 GTRKAASGVAQGTNIEKAAFNSGIDERFSDYIGVSMSVSQLQEQVQDAGYGSVTLARSRD 230 Query: 245 --VGVKRHRPRHIIAEAVTGFQDIAMRRAIWEMNRRIGMSEVVSLTVDTWFDEKGTLWTA 302 R+R R II E+ +A R WEMNRR G S+ + +TVD+W D+ G LW Sbjct: 231 PEAARMRYRNRIIIVESTMKAAQLAQRCIDWEMNRRYGRSKELLVTVDSWRDKDGKLWEP 290 Query: 303 NSLVDILIPSLGIRTVKTLLIVSVTFVKNAERGTVADMTLMDASAYSIQPVALYQS 358 N+L+ I +P G++ + L+ VT++K+ + GT A M LM +A+++QP Y + Sbjct: 291 NTLIPIDVPVFGLKD-ELWLLAEVTYLKD-DYGTTAQMVLMPPAAFTVQPYQFYSN 344