BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1322.p (421 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858099.1| DNA circulation family protein [Burkholderia... 281 1e-73 ref|YP_557980.1| putative bacteriophage DNA circulation protein,... 269 6e-70 ref|YP_004868913.1| bacteriophage DNA circulation protein, Mu-li... 170 4e-40 ref|YP_001603798.1| hypothetical protein GDI_3569 [Gluconacetoba... 170 5e-40 ref|YP_002923762.1| Mu-like prophage DNA circulation protein [Ca... 169 7e-40 >ref|YP_001858099.1| DNA circulation family protein [Burkholderia phymatum STM815] gb|ACC71053.1| DNA circulation family protein [Burkholderia phymatum STM815] Length = 490 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 199/424 (46%), Positives = 269/424 (63%), Gaps = 7/424 (1%) Query: 3 VHEYAFRDDV-WVEDLGRKARRFAVTGFLLEDDLVYKGGPVIAQRDALLKVME--TQLDD 59 +HEY ++ + W+EDLG + F + FL+E+ LVY GG V+AQRD L+K ++ T Sbjct: 67 IHEYPNKETMPWIEDLGLQTNVFRIQAFLVENSLVYGGGDVLAQRDRLIKTIQGGTTGST 126 Query: 60 TDPGF-TLVHPTFGRIDNVCCVGFECTERTDHGRYFEIRLDLVRSAVRRSPNSGVVASD- 117 PG TLVHPT+G + V C+ E D GR E+RL R R P + S Sbjct: 127 KSPGLGTLVHPTYGNL-KVNCLQAEIGSSWDRGRVVELRLVFARGGDRLYPKAQQQTSGA 185 Query: 118 LLGAAQEVKEASLLDYLAKAAAAVKKGAAVVKQAISTAVGWYTKALGLVNDVRRVFRSIS 177 + GAA V SL ++ A+++ GAAVVK A+ST V WY LV+DV+R + S+S Sbjct: 186 VTGAADAVDSTSLSSFITGIASSISAGAAVVKTAVSTVVKWYQTVNMLVHDVKRFWNSLS 245 Query: 178 TLSGNLGNLFGGANNGYNGSNNKVASGTTAAQLLAQDTAKRAAFMQAAAALQAAAAT-PA 236 TL+GN G LFGG N GY SN K AS TAA L+A DT+ RAA A AAL AAAA + Sbjct: 246 TLAGNFGRLFGGGNTGYAASNQKAASSATAASLIAADTSNRAAVATAGAALTAAAANVGS 305 Query: 237 DGAAFGSAASNLSQALLATASDPADGVRLLSQLSQYSPAEPTTSSQTGQAMATMQSAVGA 296 D F +AA ++ AL A+AS PAD +RLLS L +SP SSQ A TMQSA Sbjct: 306 DPTTFANAAQGVAAALAASASSPADAIRLLSSLIAFSPTPIVGSSQIAIAQQTMQSACAD 365 Query: 297 LLRRTALADLAVATSTYQPASSEDAIAIRNQVVSLIASEIQIAGDSGDDDSYVALIGLRA 356 L RR +A +A+++STYQP+S++DA ++R+ V +LI +EIQIA D G+DD Y +L LR Sbjct: 366 LFRRATVAQIAISSSTYQPSSADDASSMRDSVTALIDNEIQIAADQGEDDVYTSLRALRQ 425 Query: 357 AVINDLNIRGAQLASMQEFSFNGSMNALALAQRMYRDPSRANELILQSGAIHPAFMPQQF 416 +V+ DL+ RG+ L+++ F+F+ ++ +LALA RMYRD +RA EL+ Q+ IHPAFMP QF Sbjct: 426 SVVADLDSRGSGLSAIATFTFSTTLPSLALANRMYRDSTRAEELVTQADPIHPAFMPTQF 485 Query: 417 RALA 420 AL+ Sbjct: 486 NALS 489 >ref|YP_557980.1| putative bacteriophage DNA circulation protein, Mu-like [Burkholderia xenovorans LB400] gb|ABE29928.1| Putative bacteriophage DNA circulation protein, Mu-like protein [Burkholderia xenovorans LB400] Length = 475 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 187/425 (44%), Positives = 265/425 (62%), Gaps = 21/425 (4%) Query: 3 VHEYAFRDDVWVEDLGRKARRFAVTGFLLEDDLVYKGGPVIAQRDALLKVMETQLDDTDP 62 +HEY RD WVED+GR +RRF VTG+L+ G VI RDA++++ ET+ D Sbjct: 64 IHEYPKRDKPWVEDMGRASRRFQVTGYLV-------GNYVIQMRDAMIEMCETE----DS 112 Query: 63 GFTLVHPTFGRIDNVCCVGFECTERTDHGRYFEIRLDLVRSAVRRSPNSGVVASDLLGAA 122 G L+HPT+GR V + F ER D GRYFE++ D V S R P + + L+ +A Sbjct: 113 G-ELIHPTYGR-RTVSVMEFRVIERWDKGRYFELQFDFVESGDRLFPTADNATTSLISSA 170 Query: 123 -QEVKEASLLDYLAKAAAAVKKGAAVVKQAISTAVGWYTKALGLVNDVRRVFRSISTLSG 181 + +S ++ ++ + + GA++V A+STA+ WYT A +V D R + R + L G Sbjct: 171 VYALGLSSAAEFASRVLSTLSYGASIVGTAVSTALTWYTNAKNIVGDARNLIRLVFDLPG 230 Query: 182 NLGNLFGGAN----NGYNGSNNKVASGTTAAQLLAQDTAKRAAFMQAAAALQAAAAT--P 235 + G G A + Y G+ + +S T QL+AQ T R A AA L +AAA Sbjct: 231 SFGRFAGSATVPTFSKYPGAPAQ-SSSLTVDQLIAQATQARTAVTGAAGVLASAAAGLDS 289 Query: 236 ADGAAFGSAASNLSQALLATASDPADGVRLLSQLSQYSPAEPTTSSQTGQAMATMQSAVG 295 + AF +AA ++ A+LA A PADG+RLL+ L+ + PA PTT+S G +MATMQSA G Sbjct: 290 SSTDAFAAAARGVADAVLAAAPAPADGIRLLTSLASFQPAMPTTASVIGTSMATMQSACG 349 Query: 296 ALLRRTALADLAVATSTYQPASSEDAIAIRNQVVSLIASEIQIAGDSGDDDSYVALIGLR 355 L RR A+ +A+A STYQP S++DA ++R+ V +LI SEI++AG+ G+DD+Y AL LR Sbjct: 350 DLFRRAAIGSVALAASTYQPTSADDAASVRDAVTALIDSEIEVAGNQGEDDAYGALRSLR 409 Query: 356 AAVINDLNIRGAQLASMQEFSFNGSMNALALAQRMYRDPSRANELILQSGAIHPAFMPQQ 415 AA++ DLN RGA LA+++ F+ + AL LA R+YRD RA+EL+ Q+ IHPAFMPQ Sbjct: 410 AAIVQDLNKRGAGLAAIRTFNMKANQPALVLAHRIYRDAGRADELVTQANPIHPAFMPQT 469 Query: 416 FRALA 420 FRAL+ Sbjct: 470 FRALS 474 >ref|YP_004868913.1| bacteriophage DNA circulation protein, Mu-like [Gluconacetobacter xylinus NBRC 3288] dbj|BAK84543.1| bacteriophage DNA circulation protein, Mu-like [Gluconacetobacter xylinus NBRC 3288] Length = 434 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 148/420 (35%), Positives = 216/420 (51%), Gaps = 18/420 (4%) Query: 3 VHEYAFRDDVWVEDLGRKARRFAVTGFLLEDDLVYKGGPVIAQRDALLKVMETQLDDTDP 62 VHEY +RDD W ED+GR R + G L+ DD V QR ALL E + P Sbjct: 32 VHEYPYRDDPWPEDMGRAPRVMTLAGRLVGDD-------VYLQRAALLAACELE----GP 80 Query: 63 GFTLVHPTFGRIDNVCCVGFECTERTDHGRYFEIRLDLVRSAVRRSPNSGVVASDLLGAA 122 G L+HPT G + + +R D R + L L+++ R PN + + + A Sbjct: 81 GL-LIHPTLGPVQCSLVEPVQFRDRGDAQREVQFDLVLMQAGSRLYPNLLINTQNAILVA 139 Query: 123 QEVKEASLLDYLAKAAAAVKKGAAVVK-QAISTAVGWYTKALGLVNDVRRVFRSISTLSG 181 ++ D LA A++K A+ V A + A W A D + S L+ Sbjct: 140 VAAAVLAVADVLASQLASIKSTASAVSLGAQNVASAWGAGASAAGRDPAAIANETSGLTS 199 Query: 182 NLGNLFGGANNGYNGSNNKVASGTTAAQLLAQDTAKRAAFMQAAAALQAAAATPADGAAF 241 G GG + A+ T A+Q A T++ A AA AA + +D AA Sbjct: 200 YNGRYAGGML-----AAPAPANATVASQRAAVITSRTAIDAAVAALSTAALSAVSDPAAC 254 Query: 242 GSAASNLSQALLATASDPADGVRLLSQLSQYSPAEPTTSSQTGQAMATMQSAVGALLRRT 301 +AA + A+ A PAD +R+LS L+ Y P+ T++ G +AT Q+A+G LRR+ Sbjct: 255 ATAARAVVVAIRAATISPADQIRVLSTLAGYQPSVMATTAPIGADVATAQTAMGNALRRS 314 Query: 302 ALADLAVATSTYQPASSEDAIAIRNQVVSLIASEIQIAGDSGDDDSYVALIGLRAAVIND 361 A+ LA A QP S+E A A+ +++++ +EI A DS D +SY AL LR V+ D Sbjct: 315 AIIGLAEAVEAAQPDSAEQAQAMLVSIITVLDAEIITAADSADSESYAALRALRTTVVQD 374 Query: 362 LNIRGAQLASMQEFSFNGSMNALALAQRMYRDPSRANELILQSGAIHPAFMPQQFRALAE 421 L+ RGAQLA ++ F+FN SM A+ LA R+Y+DP+R +L+ ++ HP FMP QF AL + Sbjct: 375 LSERGAQLAHIETFTFNASMPAITLAWRLYKDPTRTRDLVARADCPHPLFMPLQFEALDQ 434 >ref|YP_001603798.1| hypothetical protein GDI_3569 [Gluconacetobacter diazotrophicus PAl 5] emb|CAP57512.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 435 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 147/422 (34%), Positives = 215/422 (50%), Gaps = 31/422 (7%) Query: 3 VHEYAFRDDVWVEDLGRKARRFAVTGFLLEDDLVYKGGPVIAQRDALLKVMETQLDDTDP 62 VH+Y +RD W EDLGRK R + V GF+ G QRD L++ +ET+ P Sbjct: 40 VHDYPYRDTPWAEDLGRKGRLYRVRGFV-------TGALAATQRDLLVRAVETK----GP 88 Query: 63 GFTLVHPTFGRIDNVCCVGFECTERTDHGRYFEIRLDLVRSAVRRSPNSGVVASDLLGA- 121 G L+HP+ G + C+ FE ER + ++ + + ++ G+V + L A Sbjct: 89 GL-LLHPSIGAV-QAACLRFEWRERDGYSGVIDLEFEFLE---QKDYLGGLVLTALHAAI 143 Query: 122 ---AQEVKEASLLDYLAKAAAAVKKGAAVVKQAISTAVGWYTKALGLVNDVRRVFRSIST 178 AS DY AA + GA+VV A+ TA W A+ ++ S++T Sbjct: 144 GVATLAFNAASSSDYGNATAAPMAVGASVVGAAVDTATSWAAGAVAALSSPAAFGASVAT 203 Query: 179 LSGNLGNLFGGANNGYNGSNNKVASGTTAAQLLAQDTAKRAAFMQAAAALQAAAATPADG 238 + GN G + N G S T + L A T++ Q AA AA A A Sbjct: 204 VPGNNGR-YASLNAG-----TVDPSATVSTALAALGTSQ-----QTLAATAAAIADQASA 252 Query: 239 AAFGSAASNLSQALLATASDPADGVRLLSQLSQYSPAEPTTSSQTGQAMATMQSAVGALL 298 + +A + +AL + DP + LL QL+ Y P+ +S+ G A+AT+Q+A AL Sbjct: 253 STLAAAILAVPEALRSAIPDPGTQIALLMQLTSYGPSVLASSAPIGAAIATVQTATAALC 312 Query: 299 RRTALADLAVATSTYQPASSEDAIAIRNQVVSLIASEIQIAGDSGDDDSYVALIGLRAAV 358 R+ AL +A A S +QP SS A A+R QV L+ +E IA D+G D ++ AL LRA V Sbjct: 313 RQGALLSIATACSDWQPTSSNQAEALRQQVGILLDNEATIAADAGYDATWQALRALRADV 372 Query: 359 INDLNIRGAQLASMQEFSFNGSMNALALAQRMYRDPSRANELILQSGAIHPAFMPQQFRA 418 + DL R +QL + + N + AL LAQ++Y D +RA +LI ++ IHPAFMP F A Sbjct: 373 LQDLAQRASQLPDIITVTRNAPLPALVLAQQVYADATRAPDLIQRANPIHPAFMPTSFDA 432 Query: 419 LA 420 L+ Sbjct: 433 LS 434 >ref|YP_002923762.1| Mu-like prophage DNA circulation protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gb|ACQ67614.1| Mu-like prophage DNA circulation protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 433 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 193/399 (48%), Gaps = 24/399 (6%) Query: 3 VHEYAFRDDVWVEDLGRKARRFAVTGFLLEDDLVYKGGPVIAQRDALLKVMETQLDDTDP 62 VHEY +RD WVEDLGR R+ V GFL+ED ++Y GG VI QR L+ ET Sbjct: 48 VHEYPYRDKPWVEDLGRATRQLTVKGFLVEDSVIYGGGAVIDQRSNLIAACETA-----G 102 Query: 63 GFTLVHPTFGRID-NVCCVGFECTERTDHGRYFEIRLDLVRSAVRRSPNSGVVASDLLGA 121 TL+HPT+G + ++ G + E+ D+GRYFE L + S ++ P + ++ L Sbjct: 103 AGTLIHPTYGELTVSIPSGGLKIVEQWDNGRYFEFTLRAIESGLKVFPVT--TSTPLPDE 160 Query: 122 AQEVKE--ASLLDYLAKAAAAVKKGAAVVKQAISTAVGWYTKALGLVNDVRRVFRSISTL 179 +K + L ++ + ++K A+++ STAV W ++ G +N + +++ + Sbjct: 161 ESWLKSIATTTLQFVTTVNSILRKSTALIQTLQSTAVFWVSQVTGTLNQANNLINTMTDV 220 Query: 180 --SGNLGNLFGGANNGYNGSNNKVASGTTAAQLLAQDTAKRAAFMQAAAALQAAAATPAD 237 S + G N+G +AS T L+ + A A A + D Sbjct: 221 FDSNHYGRFQSSGNSG-------LASHQTYPVLMQKQKAASAQNRGKVATVGDELTQSVD 273 Query: 238 GAAFGSAASNLSQALLATASDPADGVRLLSQLSQYSPAEPTTSSQTGQAMATMQSAVGAL 297 + A+ L A++ + S+P D +R+ LS + T + +Q A L Sbjct: 274 AETYAGVANALLSAVVLSVSEPQDQIRIFIHLSVFE-----TGNDVPGVDDAVQDAAILL 328 Query: 298 LRRTALADLAVATSTYQPASSEDAIAIRNQVVSLIASEIQIAGDSGDDDSYVALIGLRAA 357 +R ALA L A +YQP S +DA + + A D DD+Y LI L Sbjct: 329 FQRLALACLGRAALSYQPVSPDDAWDMMTLAGEALEVGAVNAADMVHDDTYRDLIALHNT 388 Query: 358 VINDLNIRGAQLASMQEFSFNGSMNALALAQRMYRDPSR 396 V++ L RGA LA E+ F+ S+ +L L++R+Y+DP+R Sbjct: 389 VVSTLTERGANLARFTEYQFDTSLPSLVLSERIYQDPAR 427