BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1321.p (617 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858100.1| hypothetical protein Bphy_1875 [Burkholderia... 310 5e-82 ref|YP_003751650.1| hypothetical protein RPSI07_0992 [Ralstonia ... 206 1e-50 ref|YP_557979.1| putative membrane protein, phage K related [Bur... 204 3e-50 ref|YP_192738.1| Phage-related tail protein [Gluconobacter oxyda... 142 2e-31 ref|ZP_06842924.1| mannosyl-glycoprotein endo-beta-N-acetylgluco... 125 2e-26 >ref|YP_001858100.1| hypothetical protein Bphy_1875 [Burkholderia phymatum STM815] gb|ACC71054.1| putative membrane protein, phage K related [Burkholderia phymatum STM815] Length = 600 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 214/587 (36%), Positives = 334/587 (56%), Gaps = 17/587 (2%) Query: 5 FQITISAIDKTTEVVRKINQQVDRMMAPFDRMAKSANSLGNEVGTNRLVKGLRGVARGAE 64 F +TI+A+DK T V+KI + + P + S S E G +R+ K ++ V A Sbjct: 7 FVVTITAVDKATASVQKIKASLASVTKPASDLKASFASFSKEAGLDRVAKSMKSVGTAAA 66 Query: 65 AAGEKIRSIIAPLTAIIGIGSIAGITALAAGLGRTQLALRNQAVSIGMSTQELQVWQGAA 124 ++ S+I PLT I GIGSIAGI LA G+ ++ + +G+STQ+LQ ++GAA Sbjct: 67 DTARQVASVITPLTTIAGIGSIAGIALLANEWGKFGAEVQRTSGVLGVSTQDLQAFRGAA 126 Query: 125 KLASLSAEDMNGALANVGEKLDNAF--RTPETVRDMNAIGLEMHRLKNGSIDTGRAILDI 182 KLA LSA+DM G+L ++G +++A R + + M G+ +HR K+G++D RA+ ++ Sbjct: 127 KLAGLSADDMTGSLKSLGRTIEDATYGRNQDALVMMQKFGITLHRTKDGAVDATRALKEV 186 Query: 183 ASAMERQ-GNVETKKRIAEAFGVSSIFPLLVQGRAAVQKFFSDSSRITKPFSDQEIARAA 241 A+A+ Q GNV+ + IA AFGV S+ PLL +G + +F + + + F D+++AR Sbjct: 187 ANAIVAQKGNVQAQGLIAGAFGVESLLPLLQKGEKGIDEFVNRARSMGLVFDDKQLARGQ 246 Query: 242 AYQQQVLALERSFETLKNSLGLAVLPAFERVTGAVGRLVEKYGDVVASKVAEYGEQIANW 301 + + +L LE S LK S G A+ PA +RV VGRLV+KYGDVVASKV+EY E+ ANW Sbjct: 247 QFNENMLKLEASATRLKYSFGDALAPAVQRVLDVVGRLVDKYGDVVASKVSEYVEKFANW 306 Query: 302 IDKTDWSRVVKDVGELVDSLGGVKTIAIALAAVTLAGPVAALASMAVSAAKISALLLP-- 359 ID DW + ++G+ VD++GGVK IAIA+AA++ AGP+A++ S+ + ++ +P Sbjct: 307 IDHVDWDKTTSEIGKFVDAIGGVKGIAIAIAAISFAGPIASVLSLISNLTLLATTTVPTA 366 Query: 360 ------VLANPLVVGVASALFSSDLNKGEEAELAKRRATLPGSSVS---MGSPLTSNAAI 410 + P++ V + L S DLN GE+ L + +A PG +G + AA Sbjct: 367 VAALARLAGGPIMAAVLALLHSKDLNTGEDDYLKQHQAQ-PGQQWQGDPIGDRRRAGAAD 425 Query: 411 DQRKAYLIGKMREDGYSDAQIAGTIGSLMQESNLDPTAVNSSSGAAGISQWLGPRKQEFE 470 D + A ++ ++ + G+S Q AG + QES +P AV + A GI QW R+ EF+ Sbjct: 426 DAQTAGVVDRLTKMGWSKEQAAGLAANFWQESLFNPNAVGDNGHAYGIGQWHEDRQAEFK 485 Query: 471 RQYGKRVQDSSFEEQVNYMLWEL-RNTEKRSGGLLRRADTAEKAAQIHAWEYERPGVAEA 529 + +G ++ S+ ++Q+ + +EL R E+++G L A +A+ A I + YERP A Sbjct: 486 KLFGTDIRKSTLDQQLQFADYELRRGNEQKAGRALMGASSAQDAGSIVSRLYERPADAAG 545 Query: 530 NIERRQANAAAVLAAMGGVGQSAPAVSPGVSGSASSVASNAGAAAVG 576 RR AAA+ + V P PG S + +A VG Sbjct: 546 EAARRGQMAAAIDGKV-HVHVDIPNAPPGTKASVRASGGATASARVG 591 >ref|YP_003751650.1| hypothetical protein RPSI07_0992 [Ralstonia solanacearum PSI07] emb|CBJ50353.1| hypothethical protein [Ralstonia solanacearum PSI07] Length = 655 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 136/348 (39%), Positives = 214/348 (61%), Gaps = 3/348 (0%) Query: 2 ANNFQITISAIDKTTEVVRKINQQVDRMMAPFDRMAKSANSLGNEVGTNRLVKGLRGVAR 61 +N F +TI+A+D+ + VV KINQ + R P + S + LG E+G NR+ G++ + Sbjct: 3 SNTFGVTITAVDRVSAVVNKINQSIARTTKPARDLQTSLSGLGKELGINRVADGMKSIGS 62 Query: 62 GAEAAGEKIRSIIAPLTAIIGIGSIAGITALAAGLGRTQLALRNQAVSIGMSTQELQVWQ 121 A A ++ S++ L AI GIG+ AGI ALA G+ + + G++ ELQ ++ Sbjct: 63 AARDAVRQVGSMVPALAAIAGIGTAAGIAALATEFGKAGAEINRTSGVTGVAAGELQAYR 122 Query: 122 GAAKLASLSAEDMNGALANVGEKLDNAF--RTPETVRDMNAIGLEMHRLKNGSIDTGRAI 179 GAAKLA LS++DM G+L +G +++A R + + M G+ + + K G++D A+ Sbjct: 123 GAAKLAGLSSDDMTGSLKTLGRTIEDATFGRNQDALVMMQKFGMRLRKTKEGAVDATLAL 182 Query: 180 LDIASAMERQ-GNVETKKRIAEAFGVSSIFPLLVQGRAAVQKFFSDSSRITKPFSDQEIA 238 ++A+A+ Q GNV+ + IA FGV S+ PLL +G + +F S + + SD+++A Sbjct: 183 KEVANAIVAQKGNVQAQALIAGTFGVESLLPLLQKGGKGIDEFVSRAKSMGLVLSDKDLA 242 Query: 239 RAAAYQQQVLALERSFETLKNSLGLAVLPAFERVTGAVGRLVEKYGDVVASKVAEYGEQI 298 RA Y + +L L+ LK + G A+ PA ERV VG+L++KYGDV A+KVAEY E+ Sbjct: 243 RAQHYNETMLRLDGQATKLKYAFGEAMAPAVERVLNVVGKLIKKYGDVAATKVAEYVEKF 302 Query: 299 ANWIDKTDWSRVVKDVGELVDSLGGVKTIAIALAAVTLAGPVAALASM 346 ANW+D+ DW + + + VD +GGVK IAIA+AA++ AGP+A + S+ Sbjct: 303 ANWLDQVDWDKTADSIAKFVDQIGGVKGIAIAIAAISFAGPIADVLSL 350 >ref|YP_557979.1| putative membrane protein, phage K related [Burkholderia xenovorans LB400] gb|ABE29927.1| Putative membrane protein, phage K related protein [Burkholderia xenovorans LB400] Length = 574 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 180/611 (29%), Positives = 294/611 (48%), Gaps = 66/611 (10%) Query: 1 MANNFQITISAIDKTTEVVRKINQQVDRMMAPFDRMAKSANSLGNEVGTNRLVKGLRGVA 60 MAN Q I+A+D+ T VRK+ + +AP + KS +L E G +RL GL A Sbjct: 1 MANKIQFVITAVDRATSTVRKVKGSIAGTIAPVTDLGKSLGALSRETGLSRLTGGLLSAA 60 Query: 61 RGAEAAGEKIRSIIAPLTAIIGIGSIAGITALAAGLGRTQLALRNQAVSIGMSTQELQVW 120 R A + K+ I PL + G+GSIAG+ AL G GR L + IG+ T ELQ + Sbjct: 61 RAAGSLAGKVAMIATPLGLLGGLGSIAGLAALITGWGRAGQELDRTSSIIGIGTTELQQY 120 Query: 121 QGAAKLASLSAEDMNGALANVGEKLDNAF--RTPETVRDMNAIGLEMHRLKNGSIDTGRA 178 +G A+LA L E M+ +L +G+ + A R P+ + M+A + +H+ +G++DT RA Sbjct: 121 RGVARLAGLDTESMDASLQQLGDTMQGAVNGRAPQALALMSAWRIGLHKTADGAVDTSRA 180 Query: 179 ILDIASAMERQ----GNVETKKRIAEAFGVSSIFPLLVQGRAAVQKFFSDSSRITKPFSD 234 +LD++ A++ G +++ ++IA+AFGV S+ PLL++G AA+Q+ ++ Sbjct: 181 LLDVSKAIQSNMRAGGTIQSARQIAQAFGVESLLPLLIKGPAAIQELVRQFDQLHATMDG 240 Query: 235 QEIARAAAYQQQVLALERSFETLKNSLGLAVLPAFERVTGAVGR--LVEKYGDVVASKVA 292 Q I +A Y Q + LE S E+L+NSLG A++P + + V + + + +A Sbjct: 241 QSIRQADEYAQNISKLEISVESLRNSLGNALIPVLQPAIELMTEWLAVPENKQKIVAGLA 300 Query: 293 EYGEQIANWIDKTDWSRVVKDVGELVDSLGGVKTIAIALAAVTLAGPVAALASMAVSAAK 352 ++ + DW + K E D Sbjct: 301 GAVRWLSEEVKSFDWDKAKKGASEFFD--------------------------------- 327 Query: 353 ISALLLPVLANPLVVGVASALFSSDLNKGEEAELAKRRATLPGSSVSMGSPLTSNAAIDQ 412 L + L+V V++A +S + +G E + L G+ +S + L A ++ Sbjct: 328 -----LVSRSYELLVRVSNA--ASRVGEGAE----RFGNALRGNGLSTNAELA--AGVNG 374 Query: 413 RKAYLIGKMREDGYSDAQIAGTIGSLMQESNLDPTAVNSSSGAAGISQWLGPRKQEFERQ 472 + G+S AQ G +L ES +DPTA + A GI+QW R+ F++ Sbjct: 375 NTTQAVKFFESRGWSHAQALGIAANLQAESGVDPTAEGDNGQAYGIAQWHKDRQAAFQKW 434 Query: 473 YGKRVQDSSFEEQVNYMLWELRN-TEKRSGGLLRRADTAEKAAQIHAWEYERPGVAEANI 531 G + +S+ E+Q+ ++ +ELRN E ++G L +A T E+AA + + YERP N+ Sbjct: 435 AGNWIGNSTLEQQLGFVDYELRNGGESQAGAALSKATTPEQAADVVSRLYERP----TNV 490 Query: 532 ERRQANAAAVLAAMGGVGQSAPAVSPGVSGSASSVASNAGAAAVG-GPAQASMVVEFKGA 590 E A A + G+ P A+ A + A++G G + + + KGA Sbjct: 491 EGEAAARAQFAGQLSGI------YGPSSIVQANQPAPDPTQASLGPGESVVKVDISLKGA 544 Query: 591 PKGTAVSVSST 601 P GT SV S+ Sbjct: 545 PHGTRTSVRSS 555 >ref|YP_192738.1| Phage-related tail protein [Gluconobacter oxydans 621H] gb|AAW62082.1| Phage-related tail protein [Gluconobacter oxydans 621H] Length = 620 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 167/634 (26%), Positives = 273/634 (43%), Gaps = 59/634 (9%) Query: 1 MANN-FQITISAIDKTTEVVRKINQQVDRMMAPFDRMAKSANSLGNEVGTNRLVKGLRGV 59 MAN ++TISA+D+ ++ + +IN ++ + AP R + N + G RL G+ V Sbjct: 1 MANKGVKVTISAVDRASQTLERINAKIAAIQAPVRRTMAAVNRFSSVTGLTRLQSGVSKV 60 Query: 60 ARGAEAAGEKIRSIIAPLTAIIGIGSIAGITALAAGLGRTQLALRNQAVSIGMSTQELQV 119 AR + + I+ L I G S+AGI LA+ G+ LR A S+GM+ L Sbjct: 61 ARAGLGMFQSLSQIVPVLGTITGAASVAGIYRLASAWGQFGTNLRTAANSMGMAPGRLMA 120 Query: 120 WQGAAKLASLSAEDMNGALANVGEKLDNAFR--TPETVRDMNAIGLEMHRLKNGSIDTGR 177 Q AA+L+ SA+ M+ AL + + A PE + A+G+ + L+ D Sbjct: 121 MQNAARLSGGSADAMSSALQGLSQTRWEATHGFAPEAIVQFKALGISLQELQRMKPD--- 177 Query: 178 AILDIASAMERQGNVETKKRIA--EAFG--VSSIFPLLVQGRAAVQKFFSDSSRITKPFS 233 + D + R K IA + FG + P+L Q Q ++ R+ Sbjct: 178 EMFDRVAKRIRAIRDPAAKVIAATQIFGGAAQGLMPILQQTEEQYQANVKEAERLG--VM 235 Query: 234 DQEIARAA-AYQQQVLALERSFETLKNSLGLAVLPAFERVTGAVGRLVEKYGDVVASKVA 292 ++ A AA + L + E SL AV P V + + + +A +A Sbjct: 236 NRAGADAADRLRHAQTGLTEAVEGFGYSLAQAVEPVITPVVNEMRDWIAANREWIAQDIA 295 Query: 293 EYGEQIANWIDKTDWSRVVKDVG-------ELVDSLGGVKT---IAIALAAVTLAGPV-A 341 Y + W+ WS++ D+ +VD LGG K+ IA+ A A PV A Sbjct: 296 GYVHRFITWLRTGGWSQIKGDIKGVYDEVLHVVDGLGGWKSAGKIALGGIAALYAAPVLA 355 Query: 342 ALASMAVSAAKISALL--LPVLANPLVVGVASALFSSDLNKGEEAELAKRRATLPGS--S 397 +A++A + IS + + + A + G+ + + + K ++ + Sbjct: 356 GVATLATAILGISTAIGGIGLAATGAIAGLGALYLAWEHYKDPKSAPPSANNHIGRGIWR 415 Query: 398 VSMGSPLTSNAAIDQRKAYLIGKMREDGYSDAQIAGTIGSLMQESNLDPTAVNSSSGAAG 457 +S G + AA D R G S + G + ++ +ES P V + A G Sbjct: 416 LSGGEKGQAQAAYDY--------FRSQGRSRTEALGMVANIDRESQFLPDNVGDNGSAYG 467 Query: 458 ISQWLGPRKQEFERQYGKRVQDSSFEEQVNYMLWELRNTEKRSGGLLRRADTAEKAAQIH 517 I QW R++ FE+ GK ++DS+F EQ+ + WEL+N + LR A ++AAQ Sbjct: 468 IGQWHPDRQKLFEQHMGKNIRDSTFAEQLQFYDWELKNKYPLADANLRMARNPQEAAQAV 527 Query: 518 AWEYERPG--VAEANIERRQANAAAVLAAMGGVGQSAPAVSPGVSGSASSVASNAGAAAV 575 ++ YE P E +I A+ A + A P +G +S Sbjct: 528 SYGYEVPANLADEGSIRGEMADQWA--------SKLGDAKLPTAAGPSS----------- 568 Query: 576 GGPAQASMVVEF--KGAPKGTAVSVSSTGMAVSV 607 GG A ++ VE + AP G++V V ST + V Sbjct: 569 GGAASQNLRVEIDHRNAPPGSSVRVKSTTPGLKV 602 >ref|ZP_06842924.1| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Burkholderia sp. Ch1-1] gb|EFG69378.1| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Burkholderia sp. Ch1-1] Length = 632 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 152/505 (30%), Positives = 233/505 (46%), Gaps = 58/505 (11%) Query: 69 KIRSIIAPLTAIIGIGSIAGIT-ALAAGLGRTQLALRNQAVSIGMSTQELQVWQGAAKLA 127 ++ S++A TA +G+ + T A AA LG A ++ MST EL WQ AA+ A Sbjct: 61 EVLSLLAIFTAGMGLKNFTESTIASAANLGF-------MAKNLQMSTTELSAWQRAAERA 113 Query: 128 SLSAEDMNGALANVGEKLDNAFRTPETVRDMNAI---GLEMHRLKNGSIDTGRAILDIAS 184 SAE + AL + + + F+ + A G ++ LK+G+ I S Sbjct: 114 GGSAEGITKALQDSQQTVAK-FKIGQVDDSAQAFLRWGGNVNDLKDGNTYLLARSRIIHS 172 Query: 185 AMERQGNVETKKRIAEAFGVSS-IFPLLVQGRAAVQKFFSDSSRITKPFSDQEIARAAAY 243 E+ + + IA+A GV F L+ QG A++ + + R +D+ A+A Sbjct: 173 MFEQ--DPARARLIAQAMGVGDGEFNLIKQGPQAIEALVA-AQRKNSAVTDEMAAKALKL 229 Query: 244 QQQVLALERSFETLKNSLGLAVLPAFERVTGAVGRLVEKYGDVVASKVAEYGEQIANWID 303 + + L L + ++ L ++P FE+ + V+A VA++ IA WID Sbjct: 230 KNEWLDLSDRLKYTGTTIVLELIPIFEKWAQKL--------QVLADWVADHKADIAQWID 281 Query: 304 KTDWS--RVVKDVGELVDSLGGVKTIAIALAAVTLAGPVAALASMAVSAAKISALLLPVL 361 + R ++ + +S+GG K + IALAA+ + + L +A + + L + Sbjct: 282 NAIAAVQRFIQWADKAAESVGGWKNVLIALAAIKVLSATSGLLGLAGALTSVGGALGGLA 341 Query: 362 ANP------LVVGVASALFSSDLNKGEEAELAKRRATLPGS--------------SVSMG 401 A P +VG+A E R A +V G Sbjct: 342 AAPAIAGLATLVGLAGLSIEKIKESTEPGHFVGRNAGAKNQVPLRKSDTNAALWENVKSG 401 Query: 402 SPL-----------TSNAAIDQRKAYLIGKMREDGYSDAQIAGTIGSLMQESNLDPTAVN 450 S +N A QR + + G+S Q AG +GSL QES +DPT+ N Sbjct: 402 SKSFFTTEKGHFVSRTNGAEQQRARVALDYFMKQGWSREQAAGIVGSLQQESGVDPTSRN 461 Query: 451 SSSGAAGISQWLGPRKQEFERQYGKRVQDSSFEEQVNYMLWEL-RNTEKRSGGLLRRADT 509 SSGA GI QWLG R +F+ G ++ SS EEQ+ +M +EL + E+ +G LR A T Sbjct: 462 KSSGAYGIGQWLGSRVADFKTWSGHNLEGSSIEEQLAFMQYELTKGKEQAAGRQLRAART 521 Query: 510 AEKAAQIHAWEYERPGVAEANIERR 534 A++AA IHA YERPG AEANI +R Sbjct: 522 AQEAAAIHAQAYERPGAAEANIAQR 546