BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1317.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858103.1| Mu tail sheath family protein [Burkholderia ... 323 2e-86 ref|YP_003366125.1| phage tail sheath protein [Citrobacter roden... 318 8e-85 ref|YP_557975.1| putative bacteriophage tail sheath protein GpL,... 316 3e-84 ref|ZP_04632383.1| Bacteriophage Mu tail sheath protein (GpL) [Y... 309 3e-82 ref|ZP_04640328.1| Bacteriophage Mu tail sheath protein (GpL) [Y... 308 6e-82 >ref|YP_001858103.1| Mu tail sheath family protein [Burkholderia phymatum STM815] gb|ACC71057.1| Mu tail sheath family protein [Burkholderia phymatum STM815] Length = 493 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 170/287 (59%), Positives = 218/287 (75%) Query: 1 MSGGATNPALTTALANLGDREFDFIAFPYTDSASLDAIKAFLSTKTGRWSWQKMIYGHAF 60 M+GGATNP LTTAL NL D FDFI PYTD+ SLDA+K FL+ TGRWSWQ+ +YGH F Sbjct: 204 MAGGATNPTLTTALGNLLDMPFDFIVCPYTDTTSLDALKGFLNDTTGRWSWQQQVYGHVF 263 Query: 61 AAFRGSLAQATTLGVSRNDEHVSILPFNGSPSSAYIWAADLAATAAVSLRADCARPLQTL 120 A+RG+ A TTLG++RN++H +I+ FN SP+ + WAA LA AAVSLRAD A PLQT+ Sbjct: 264 TAYRGTFASQTTLGLARNNQHETIMGFNDSPTPNWQWAAGLAGAAAVSLRADPATPLQTV 323 Query: 121 AMSTVLAPPLEKRFTISDRNVLLWDGMSTFTVADDGTVQLDSIITTYQKNAAGVADDSML 180 + VLAPPL+ RF +S RN LL+DG+STFTVA DGTV ++++ITTYQ N+ G D+S L Sbjct: 324 VIQGVLAPPLQSRFNLSQRNTLLYDGISTFTVAQDGTVAIENLITTYQTNSFGQPDNSYL 383 Query: 181 YVEAMFNIAYVLRQLRADVTTKFARMKLVSDQTRVTYGTNTVNPKTIKAAQIGKYKQLED 240 VE +F +A++LR + VT++FARMKL +D TR G+N V P IKAA I K+++ E Sbjct: 384 EVETLFTLAFLLRDYASMVTSQFARMKLAADGTRFAPGSNIVTPSIIKAAIIAKFQEQEY 443 Query: 241 NGFAQNSAAFAQNIIVQQNSQNPNRVDVLYPAVLMNQLRVFALLFQF 287 NG+ QNS AFAQ +IVQQN+ NPNR+DVL+P L++QLR+FALL QF Sbjct: 444 NGYVQNSKAFAQALIVQQNASNPNRIDVLWPGTLIDQLRIFALLGQF 490 >ref|YP_003366125.1| phage tail sheath protein [Citrobacter rodentium ICC168] emb|CBG89333.1| putative phage tail sheath protein [Citrobacter rodentium ICC168] Length = 500 Score = 318 bits (814), Expect = 8e-85, Method: Composition-based stats. Identities = 165/290 (56%), Positives = 210/290 (72%) Query: 1 MSGGATNPALTTALANLGDREFDFIAFPYTDSASLDAIKAFLSTKTGRWSWQKMIYGHAF 60 M+GGA P + LANL D+ FDFI P+ D+ASLDAIKAFLS TGRWSW++ +YGHAF Sbjct: 204 MTGGAGAPDMVGGLANLQDKTFDFIVNPWDDTASLDAIKAFLSDATGRWSWEQQLYGHAF 263 Query: 61 AAFRGSLAQATTLGVSRNDEHVSILPFNGSPSSAYIWAADLAATAAVSLRADCARPLQTL 120 G+ A+ T G +RN++H +++ N SPS +Y+WAA L A SLR D RP QTL Sbjct: 264 GVTSGTYAELGTKGETRNNQHETLMGVNRSPSPSYVWAAALTGAIAPSLRNDPGRPTQTL 323 Query: 121 AMSTVLAPPLEKRFTISDRNVLLWDGMSTFTVADDGTVQLDSIITTYQKNAAGVADDSML 180 + VLAP LE RFT+++RN LL G+STFTVADDGTV ++++ITTYQ NA G ADDS L Sbjct: 324 PVYGVLAPALEDRFTLTERNNLLHSGISTFTVADDGTVSVENVITTYQTNAYGDADDSYL 383 Query: 181 YVEAMFNIAYVLRQLRADVTTKFARMKLVSDQTRVTYGTNTVNPKTIKAAQIGKYKQLED 240 VE +FN+ +V+R LR VT+KF RMKL +D TR G V P I+A QI +Y+ LE Sbjct: 384 QVETLFNLMFVVRYLRTQVTSKFGRMKLAADGTRFAPGAAIVTPNVIRADQIAEYQTLEY 443 Query: 241 NGFAQNSAAFAQNIIVQQNSQNPNRVDVLYPAVLMNQLRVFALLFQFTYQ 290 NG+ Q+SA+FA+N+IV+QN+ NPNRVDVL+P LMNQLR+FALL QF Q Sbjct: 444 NGYVQDSASFAKNLIVEQNALNPNRVDVLWPGTLMNQLRIFALLTQFRLQ 493 >ref|YP_557975.1| putative bacteriophage tail sheath protein GpL, Mu-like [Burkholderia xenovorans LB400] gb|ABE29923.1| Putative bacteriophage tail sheath protein GpL, Mu-like protein [Burkholderia xenovorans LB400] Length = 498 Score = 316 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 159/287 (55%), Positives = 212/287 (73%) Query: 1 MSGGATNPALTTALANLGDREFDFIAFPYTDSASLDAIKAFLSTKTGRWSWQKMIYGHAF 60 MSGG NP+LT LANL D FDFI PYTD+ SLDA+K+FL+ + GRW+W K IYGH F Sbjct: 209 MSGGLVNPSLTAGLANLADMPFDFIVMPYTDATSLDAVKSFLNDQNGRWAWSKGIYGHFF 268 Query: 61 AAFRGSLAQATTLGVSRNDEHVSILPFNGSPSSAYIWAADLAATAAVSLRADCARPLQTL 120 A +RG++ TT GV+RND+H S++ FNGSP+ A++ AADL AVSLRAD PLQT+ Sbjct: 269 AMYRGTVGALTTFGVTRNDQHGSVMGFNGSPTPAWVGAADLCGAVAVSLRADPGLPLQTV 328 Query: 121 AMSTVLAPPLEKRFTISDRNVLLWDGMSTFTVADDGTVQLDSIITTYQKNAAGVADDSML 180 A+ST LAPP+ RF + DRN LL+DG+STFTVADDGTV ++++ITTYQKN G D+S L Sbjct: 329 ALSTFLAPPVASRFALPDRNTLLFDGISTFTVADDGTVAIENLITTYQKNGFGQPDNSYL 388 Query: 181 YVEAMFNIAYVLRQLRADVTTKFARMKLVSDQTRVTYGTNTVNPKTIKAAQIGKYKQLED 240 VE +F + YV+R+L+ VT+K+ R KL ++ TR G N V P I+A QI +Y+ +E Sbjct: 389 QVETLFLLMYVIRRLKGVVTSKYGRKKLAANGTRFAPGANIVTPNIIRADQIAEYQAMEF 448 Query: 241 NGFAQNSAAFAQNIIVQQNSQNPNRVDVLYPAVLMNQLRVFALLFQF 287 G+ QNS AFA +IV+Q++QNP+R++ L+ VL++ LR+FALL QF Sbjct: 449 EGYVQNSDAFAAGLIVEQDAQNPSRINELWDGVLIDGLRIFALLAQF 495 >ref|ZP_04632383.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia frederiksenii ATCC 33641] gb|EEQ14834.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia frederiksenii ATCC 33641] Length = 502 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 161/290 (55%), Positives = 204/290 (70%) Query: 1 MSGGATNPALTTALANLGDREFDFIAFPYTDSASLDAIKAFLSTKTGRWSWQKMIYGHAF 60 M+GGA P L LANL DR FDFI PYTD+ SLDAIKAFLS TGRWS+ + +YGH+F Sbjct: 210 MAGGAGTPELAGGLANLQDRTFDFIINPYTDTTSLDAIKAFLSDSTGRWSYSQQLYGHSF 269 Query: 61 AAFRGSLAQATTLGVSRNDEHVSILPFNGSPSSAYIWAADLAATAAVSLRADCARPLQTL 120 AA G+ Q T G RND+H S+L + SP+ AYIW+A A SLR D RPLQTL Sbjct: 270 AAQSGTYGQLTAAGELRNDQHASLLGMHNSPTPAYIWSAAYVGAIAQSLRNDPGRPLQTL 329 Query: 121 AMSTVLAPPLEKRFTISDRNVLLWDGMSTFTVADDGTVQLDSIITTYQKNAAGVADDSML 180 +S VLAPPL RFT+++RN LL G+ST TVADDGTVQ+++IITTYQ N G DDS L Sbjct: 330 TVSGVLAPPLSSRFTLTERNNLLHSGISTVTVADDGTVQVENIITTYQTNKYGAEDDSYL 389 Query: 181 YVEAMFNIAYVLRQLRADVTTKFARMKLVSDQTRVTYGTNTVNPKTIKAAQIGKYKQLED 240 +E +F + +V R LR VT+KFARMKL +D TR G+ + P I+A I +Y+ LE Sbjct: 390 QIETLFLLMFVTRYLRTQVTSKFARMKLAADGTRFAAGSAIITPNVIRAELIAQYQTLEF 449 Query: 241 NGFAQNSAAFAQNIIVQQNSQNPNRVDVLYPAVLMNQLRVFALLFQFTYQ 290 NG+ Q++ FA+ +IV++N+ NPNRVDVL+ VL+NQLR+FA+L QF Q Sbjct: 450 NGYVQDAKGFARGLIVEKNASNPNRVDVLWTGVLINQLRIFAVLNQFRLQ 499 >ref|ZP_04640328.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia mollaretii ATCC 43969] gb|EEQ11122.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia mollaretii ATCC 43969] Length = 502 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 160/290 (55%), Positives = 205/290 (70%) Query: 1 MSGGATNPALTTALANLGDREFDFIAFPYTDSASLDAIKAFLSTKTGRWSWQKMIYGHAF 60 M+GGA P L LANL DR FDFI PYTD+ SLDAIKAFLS TGRWS+ + +YGH+F Sbjct: 210 MAGGAGAPDLAAGLANLQDRTFDFIINPYTDTTSLDAIKAFLSDSTGRWSYSQQLYGHSF 269 Query: 61 AAFRGSLAQATTLGVSRNDEHVSILPFNGSPSSAYIWAADLAATAAVSLRADCARPLQTL 120 AA G+ Q T G RND+H S+L + SP+ AYIW+A A SLR D RPLQTL Sbjct: 270 AAQSGTYGQLTAAGELRNDQHASLLGIHNSPTPAYIWSAAYVGAIAQSLRNDPGRPLQTL 329 Query: 121 AMSTVLAPPLEKRFTISDRNVLLWDGMSTFTVADDGTVQLDSIITTYQKNAAGVADDSML 180 A+S VLAPPL RFT+++RN LL G+ST TVADDGTVQ+++IITTYQ N G DDS L Sbjct: 330 AVSGVLAPPLSSRFTLTERNNLLHSGISTVTVADDGTVQVENIITTYQTNKYGAEDDSYL 389 Query: 181 YVEAMFNIAYVLRQLRADVTTKFARMKLVSDQTRVTYGTNTVNPKTIKAAQIGKYKQLED 240 +E +F + +V R LR VT+KFARMKL +D TR G+ + P I+A I +Y+ LE Sbjct: 390 QIETLFLLMFVTRYLRTQVTSKFARMKLAADGTRFAPGSAIITPNVIRAELIAQYQTLEF 449 Query: 241 NGFAQNSAAFAQNIIVQQNSQNPNRVDVLYPAVLMNQLRVFALLFQFTYQ 290 NG+ Q++ FA+ +IV++++ NPNR+DVL+ VL+NQLR+FA+L QF Q Sbjct: 450 NGYVQDAKGFARGLIVEKSATNPNRIDVLWTGVLINQLRIFAVLNQFRLQ 499