BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1316.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_557975.1| putative bacteriophage tail sheath protein GpL,...   155   3e-36
ref|YP_001858103.1| Mu tail sheath family protein [Burkholderia ...   132   2e-29
ref|ZP_06898887.1| bacteriophage Mu tail sheath protein [Roseomo...   109   2e-22
ref|YP_003366125.1| phage tail sheath protein [Citrobacter roden...   103   1e-20
ref|ZP_04617673.1| Bacteriophage Mu tail sheath protein (GpL) [Y...   100   2e-19

>ref|YP_557975.1| putative bacteriophage tail sheath protein GpL, Mu-like
           [Burkholderia xenovorans LB400]
 gb|ABE29923.1| Putative bacteriophage tail sheath protein GpL, Mu-like protein
           [Burkholderia xenovorans LB400]
          Length = 498

 Score =  155 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/136 (63%), Positives = 106/136 (77%)

Query: 37  DDLRTGLFFADLDPSRANSGASTQRALVIGQITSAGLGVPNVATISQGVADAKIVGGQGS 96
           D +R  LF+A++D S+AN+   +QRAL+IGQIT++G G PN  TI QG +DAK VGG GS
Sbjct: 12  DQIRVPLFYAEVDNSQANTATQSQRALIIGQITASGTGTPNTPTICQGKSDAKTVGGPGS 71

Query: 97  MLAQMVAAYRNADSFGEVWQLPLSDDAAAVAATGSISFTAQATDTGVLSLYIAGKLVSLA 156
           MLA M AAYR++D FGEVW LPL+DD +AVAATGSI+FTA AT  GVL LY+AG+LV+  
Sbjct: 72  MLALMTAAYRDSDDFGEVWYLPLADDGSAVAATGSINFTAAATAVGVLFLYLAGQLVTQT 131

Query: 157 VTASLTPSQLAANLVA 172
           V ASLT +QLA  LVA
Sbjct: 132 VNASLTAAQLATALVA 147


>ref|YP_001858103.1| Mu tail sheath family protein [Burkholderia phymatum STM815]
 gb|ACC71057.1| Mu tail sheath family protein [Burkholderia phymatum STM815]
          Length = 493

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/123 (57%), Positives = 91/123 (73%)

Query: 38  DLRTGLFFADLDPSRANSGASTQRALVIGQITSAGLGVPNVATISQGVADAKIVGGQGSM 97
           ++R  LF+A+LD S AN+  + QRAL+IGQITS+G+  PNV  IS G  DA + GG  SM
Sbjct: 11  NIRVPLFYAELDNSHANTAQANQRALIIGQITSSGIATPNVPIISSGATDAAVQGGASSM 70

Query: 98  LAQMVAAYRNADSFGEVWQLPLSDDAAAVAATGSISFTAQATDTGVLSLYIAGKLVSLAV 157
           LA M AAY+  DSFGEVW LPL+D A + AA+GSI+FTA  T  G LSLYIAG+LV++ V
Sbjct: 71  LALMTAAYKANDSFGEVWCLPLADAAGSTAASGSIAFTAAPTANGTLSLYIAGQLVTVPV 130

Query: 158 TAS 160
           T++
Sbjct: 131 TST 133


>ref|ZP_06898887.1| bacteriophage Mu tail sheath protein [Roseomonas cervicalis ATCC
           49957]
 gb|EFH09389.1| bacteriophage Mu tail sheath protein [Roseomonas cervicalis ATCC
           49957]
          Length = 491

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/121 (52%), Positives = 74/121 (61%)

Query: 38  DLRTGLFFADLDPSRANSGASTQRALVIGQITSAGLGVPNVATISQGVADAKIVGGQGSM 97
           +LR  LFFA+LD SRANS    QR+L+IGQ+  +G     V  + QGV   K   G GSM
Sbjct: 11  NLRVPLFFAELDNSRANSAQEAQRSLIIGQMLGSGTLAAGVPVLMQGVDWVKQRAGAGSM 70

Query: 98  LAQMVAAYRNADSFGEVWQLPLSDDAAAVAATGSISFTAQATDTGVLSLYIAGKLVSLAV 157
           LAQM   YR  D FGEVW LPL+D  A VAATGS++ +   T  G LSLYI G  V   V
Sbjct: 71  LAQMAECYRKRDGFGEVWLLPLADAVAGVAATGSVALSGSPTAAGTLSLYIGGMRVQQLV 130

Query: 158 T 158
           T
Sbjct: 131 T 131


>ref|YP_003366125.1| phage tail sheath protein [Citrobacter rodentium ICC168]
 emb|CBG89333.1| putative phage tail sheath protein [Citrobacter rodentium ICC168]
          Length = 500

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/136 (44%), Positives = 85/136 (62%)

Query: 38  DLRTGLFFADLDPSRANSGASTQRALVIGQITSAGLGVPNVATISQGVADAKIVGGQGSM 97
           +LRT LFF + D S ANS  +TQR L+IGQ+   G   P++      V     + G+GSM
Sbjct: 11  NLRTPLFFVEFDNSMANSATATQRTLLIGQMLDTGTTAPDIPVRVSSVNVVGELTGRGSM 70

Query: 98  LAQMVAAYRNADSFGEVWQLPLSDDAAAVAATGSISFTAQATDTGVLSLYIAGKLVSLAV 157
           L  M+ AY+  D+  E+W LPL+ D++ V+ATGSI+ +  A+  GV+SLYI G  V ++V
Sbjct: 71  LHAMMTAYQQNDTAAEIWILPLAADSSMVSATGSIAISGTASGAGVISLYIGGTRVQVSV 130

Query: 158 TASLTPSQLAANLVAA 173
           T+  T SQ+A  L AA
Sbjct: 131 TSDDTSSQIATALAAA 146


>ref|ZP_04617673.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia ruckeri ATCC
           29473]
 gb|EEP97827.1| Bacteriophage Mu tail sheath protein (GpL) [Yersinia ruckeri ATCC
           29473]
          Length = 496

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/124 (50%), Positives = 80/124 (64%)

Query: 37  DDLRTGLFFADLDPSRANSGASTQRALVIGQITSAGLGVPNVATISQGVADAKIVGGQGS 96
           ++LRT LFFA+ D S+ANS  +TQR L+IGQ+ +A    PNV  +   VA    + G GS
Sbjct: 10  NNLRTPLFFAEFDNSQANSATTTQRTLIIGQMLAAATLPPNVPVLVSSVATVAGLCGAGS 69

Query: 97  MLAQMVAAYRNADSFGEVWQLPLSDDAAAVAATGSISFTAQATDTGVLSLYIAGKLVSLA 156
           ML   +AAY   D  GE++ LPLSD  A VAATG I+ T  A+ TG +SLYIAG  V +A
Sbjct: 70  MLQGQMAAYLANDIAGEIYILPLSDAEAMVAATGKITVTTPASATGAISLYIAGIRVQIA 129

Query: 157 VTAS 160
           V A+
Sbjct: 130 VVAT 133