BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1315.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03045907.1| conserved hypothetical protein [Escherichia c... 105 2e-21 ref|YP_003366127.1| hypothetical protein ROD_25921 [Citrobacter ... 104 6e-21 emb|CCD28656.1| Putative uncharacterized protein [Candidatus Glo... 91 5e-17 ref|YP_001721846.1| Mu tail sheath family protein [Yersinia pseu... 87 9e-16 ref|ZP_04629936.1| hypothetical protein yberc0001_14840 [Yersini... 86 3e-15 >ref|ZP_03045907.1| conserved hypothetical protein [Escherichia coli E22] gb|EDV82132.1| conserved hypothetical protein [Escherichia coli E22] Length = 181 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 8/185 (4%) Query: 4 SADLRQIAVAALKGKTAAGQSVFSPRDIAIWDGEYPMLIVTVPEEEGESSGRHGAPLFTV 63 SA +RQ+ V AL G T+AG VFSPRD + YP+L+V P E+ +S GR+ P FT Sbjct: 3 SAAIRQMVVTALTGTTSAGDRVFSPRDWSTSPDMYPVLLVQTPFEQKKSQGRN-TPAFTT 61 Query: 64 TATLHVHARVQHPAGDN-DIGAVLVQADLEVMREQIKAALINYTPLMSLLQQYPFFRSQI 122 T+ + RVQ GD D GA+ + LE +REQ++ A+IN L +Q+Y RS I Sbjct: 62 LTTVRITGRVQEYDGDTVDDGAMRAELALESLREQVERAVINSYELTRNIQKYAEVRSTI 121 Query: 123 QVGTPDTDTALHLGTLHQQLGMEFVQSSDQFYQEPSLPLEGIDTRVPPATPD-TPQFGAD 181 V D++ H+G L ++ +E Q + FY S+PLEG+D V PD T + G Sbjct: 122 NV---DSEGEAHMGQLLFEIDIEHYQGPEDFYPVQSVPLEGMDIAVD--MPDGTVKPGIS 176 Query: 182 VNLPQ 186 +NL + Sbjct: 177 LNLQE 181 >ref|YP_003366127.1| hypothetical protein ROD_25921 [Citrobacter rodentium ICC168] emb|CBG89335.1| hypothetical prophage protein [Citrobacter rodentium ICC168] Length = 181 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 8/185 (4%) Query: 4 SADLRQIAVAALKGKTAAGQSVFSPRDIAIWDGEYPMLIVTVPEEEGESSGRHGAPLFTV 63 ++ +RQ+ VA+L GKT AG+ V+SPRD YP ++V P + S GR+ AP FT Sbjct: 3 ASTIRQLVVASLAGKTDAGERVYSPRDWPTRADIYPAILVQTPFDHKRSQGRN-APAFTT 61 Query: 64 TATLHVHARVQHPAGDN-DIGAVLVQADLEVMREQIKAALINYTPLMSLLQQYPFFRSQI 122 T+ + RVQ G++ D GA+ + LE +R+Q++ A+IN L +QQY RS I Sbjct: 62 VTTIRITGRVQEYDGESEDDGAMRAEIALETLRDQVERAVINSYELTRRIQQYAEVRSTI 121 Query: 123 QVGTPDTDTALHLGTLHQQLGMEFVQSSDQFYQEPSLPLEGIDTRVPPATPD-TPQFGAD 181 V D D HLG L ++ +E Q + FY + PLEG+D + PD TP+ G Sbjct: 122 NV---DADGEAHLGQLLVEIDIEHYQGPEDFYPIETHPLEGVDITI--EMPDGTPRPGVS 176 Query: 182 VNLPQ 186 ++L + Sbjct: 177 IDLQE 181 >emb|CCD28656.1| Putative uncharacterized protein [Candidatus Glomeribacter gigasporarum BEG34] Length = 166 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 15/168 (8%) Query: 5 ADLRQIAVAALKGK-TAAGQSVFSPRDIAIWDGEYPMLIVTVPEEEGESSGRHGAPLFTV 63 A R+ AVA LK T AGQ+VFSPRD W GEYP+++V P E S R G P F Sbjct: 3 AHFREQAVATLKAAHTTAGQNVFSPRDWPTWRGEYPLILVHTPRERKASITR-GIPQFNT 61 Query: 64 TATLHVHARVQHPAGDNDIGAVLVQADLEVMREQIKAALINYTPLMSLLQQYPFFRSQIQ 123 T L V ARV+ + + ADLE + QI+AAL+ L+S LQ F ++I+ Sbjct: 62 TLWLAVSARVETHSAE------AAYADLETLGAQIEAALLTDFNLISQLQHIAFVDTRIE 115 Query: 124 VGTPDTDTALHLGTLHQQLGMEFVQSSDQFYQEP----SLPLEGIDTR 167 V + + HLG + G+EF + D Q P + PLEGID + Sbjct: 116 V---NAQSKGHLGEVQIDFGLEFYEVFDPVTQSPVQPIATPLEGIDVQ 160 >ref|YP_001721846.1| Mu tail sheath family protein [Yersinia pseudotuberculosis YPIII] gb|ACA69393.1| Mu tail sheath family protein [Yersinia pseudotuberculosis YPIII] Length = 477 Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 7/172 (4%) Query: 4 SADLRQIAVAALKGKTAAGQSVFSPRDIAIWDGEYPMLIVTVPEEEGESSGRHGAPLFTV 63 +A +R++ V A+ G T AG V+SPRD + YP+++V EE +S GR+ AP F Sbjct: 3 TAQVRKLVVDAIIGNTDAGNRVYSPRDWPTTEEMYPVILVQTLIEEKQSLGRN-APQFNT 61 Query: 64 TATLHVHARVQHPAGDND-IGAVLVQADLEVMREQIKAALINYTPLMSLLQQYPFFRSQI 122 T+ + R+Q G+N+ GA + LE +REQI+ A+IN L QQ+ RS I Sbjct: 62 ITTVRITGRLQELDGENENDGANKAELALERLREQIERAVINSYDLTRQTQQFARVRSTI 121 Query: 123 QVGTPDTDTALHLGTLHQQLGMEFVQSSDQFYQEPSLPLEGIDTRVPPATPD 174 + D+ HL L +L +E+ Q + FY + LEG+D + A PD Sbjct: 122 DL---DSAGEGHLAQLLMELDIEYYQGPEDFYPINADQLEGMDITI--AMPD 168 >ref|ZP_04629936.1| hypothetical protein yberc0001_14840 [Yersinia bercovieri ATCC 43970] gb|EEQ05170.1| hypothetical protein yberc0001_14840 [Yersinia bercovieri ATCC 43970] Length = 173 Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 86/157 (54%), Gaps = 5/157 (3%) Query: 10 IAVAALKGKTAAGQSVFSPRDIAIWDGEYPMLIVTVPEEEGESSGRHGAPLFTVTATLHV 69 + V+A+KG T A V+SPRD + YP+++V EE +S GR+ AP F T+ + Sbjct: 1 MVVSAIKGNTDAETRVYSPRDWPTTEEMYPVILVQTLIEEKQSLGRN-APQFNTITTVRI 59 Query: 70 HARVQHPAGDND-IGAVLVQADLEVMREQIKAALINYTPLMSLLQQYPFFRSQIQVGTPD 128 R+Q G+N+ GA + LE +REQI+ A+IN L +QQ+ RS I + D Sbjct: 60 TGRLQELDGENENDGANKAELSLERLREQIERAVINSYDLTRQIQQFARVRSTIDL---D 116 Query: 129 TDTALHLGTLHQQLGMEFVQSSDQFYQEPSLPLEGID 165 + HL L +L +E+ Q + FY PLEGID Sbjct: 117 SSGEGHLAQLLMELDIEYYQGPEDFYPIVGDPLEGID 153