BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1314.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_557971.1| putative phage protein Gp20 [Burkholderia xenov... 402 e-110 ref|YP_001858107.1| putative phage protein GP20 [Burkholderia ph... 399 e-109 ref|YP_004128152.1| phage protein gp20 [Alicycliphilus denitrifi... 230 2e-58 ref|YP_002549663.1| hypothetical protein Avi_2319 [Agrobacterium... 228 1e-57 ref|YP_673778.1| phage protein GP20 [Mesorhizobium sp. BNC1] >gi... 220 2e-55 >ref|YP_557971.1| putative phage protein Gp20 [Burkholderia xenovorans LB400] gb|ABE29919.1| Putative phage protein Gp20 [Burkholderia xenovorans LB400] Length = 345 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 190/268 (70%), Positives = 222/268 (82%), Gaps = 1/268 (0%) Query: 2 RYFDVPRLMHDDTLYATELQNIREFGQESVLMQVEAEVARRLSGPTGLLSSVEYTKEYLR 61 RYF VPR+MH DTLYA E+Q+IR FG ES LMQV+AEVARRL+GPTGL S++EYT EY R Sbjct: 79 RYFKVPRIMHADTLYANEIQDIRAFGTESELMQVQAEVARRLNGPTGLTSNIEYTWEYHR 138 Query: 62 LAAVQGMVLDPKDGSVLYNWFDEFGITQASEVAFNLGAGTANSLRTICNGITRSMARAAK 121 LAAVQGM+LD DG+V YNWFDEFGIT S V FNL A T NSLR I NGI R+MAR A+ Sbjct: 139 LAAVQGMLLD-ADGTVKYNWFDEFGITPPSLVPFNLSAQTPNSLRPIVNGIRRTMARKAQ 197 Query: 122 GSFISTTRVFALCGDSFYDLFTNHPDVIRTFVNWSDAAALRDNSQGAAFSYFDFAGITWM 181 G+F+ TT++FALCGD FYD TNH DVIRT++NWS A+ LRD+SQGAAF F FAG+TW Sbjct: 198 GAFLPTTKIFALCGDLFYDELTNHTDVIRTYLNWSAASELRDDSQGAAFEAFPFAGVTWS 257 Query: 182 NYRGSDDNSTIKIADDKVKFFPVGAPGIFREANAPGETVDWVNTPGKPVYVLPIFDTQRR 241 NYRGSDDN+T+KI DD+V FFPVGAPG+FR A APGE+ +WVNTPGKP+YV+PI+D R Sbjct: 258 NYRGSDDNTTLKIPDDEVHFFPVGAPGVFRVAYAPGESFEWVNTPGKPIYVIPIYDRDRN 317 Query: 242 MWWKMEAYAYPLFICTRPEVLQSGRAGS 269 +WKMEAY+YPL ICTRPEVLQ G AG+ Sbjct: 318 SFWKMEAYSYPLHICTRPEVLQKGHAGA 345 >ref|YP_001858107.1| putative phage protein GP20 [Burkholderia phymatum STM815] gb|ACC71061.1| putative phage protein GP20 [Burkholderia phymatum STM815] Length = 345 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 189/266 (71%), Positives = 215/266 (80%), Gaps = 1/266 (0%) Query: 2 RYFDVPRLMHDDTLYATELQNIREFGQESVLMQVEAEVARRLSGPTGLLSSVEYTKEYLR 61 RYF+VPRL H DT+YA ELQNIR FG ES LMQV+ EVARRL+GPTGLL ++EYT E+ R Sbjct: 79 RYFEVPRLRHADTIYANELQNIRAFGTESELMQVQDEVARRLAGPTGLLKNIEYTWEFQR 138 Query: 62 LAAVQGMVLDPKDGSVLYNWFDEFGITQASEVAFNLGAGTANSLRTICNGITRSMARAAK 121 LAAVQG D DG+V Y+WF EFGIT A+EV FNL A TANSLR +CN ITRSMAR A+ Sbjct: 139 LAAVQGKFTD-ADGTVKYDWFQEFGITPATEVGFNLAAATANSLRPLCNQITRSMARKAQ 197 Query: 122 GSFISTTRVFALCGDSFYDLFTNHPDVIRTFVNWSDAAALRDNSQGAAFSYFDFAGITWM 181 G+F +T++FALCGD+FYD F NHPDVIRTFVNWSDA +R + G AF F+F GI W+ Sbjct: 198 GAFTPSTKIFALCGDAFYDAFVNHPDVIRTFVNWSDAVEIRGGNSGGAFQAFEFGGIRWL 257 Query: 182 NYRGSDDNSTIKIADDKVKFFPVGAPGIFREANAPGETVDWVNTPGKPVYVLPIFDTQRR 241 NYRGSDDN+TIKIADDKVKFFPVGAPGIFR A APGE+ WVNTPGKPVYV+PI D R Sbjct: 258 NYRGSDDNATIKIADDKVKFFPVGAPGIFRRALAPGESFQWVNTPGKPVYVVPIMDRDRD 317 Query: 242 MWWKMEAYAYPLFICTRPEVLQSGRA 267 WWKME +YPL ICTRPEVL SGR+ Sbjct: 318 EWWKMEVSSYPLHICTRPEVLFSGRS 343 >ref|YP_004128152.1| phage protein gp20 [Alicycliphilus denitrificans BC] gb|ADV01265.1| phage protein GP20 [Alicycliphilus denitrificans BC] Length = 337 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 124/267 (46%), Positives = 165/267 (61%), Gaps = 8/267 (2%) Query: 1 MRYFDVPRLMHDDTLYATELQNIREFGQESVLMQVEAEVARRLSGPTGLLSSVEYTKEYL 60 +R F R+ DTL+A E+Q+IR +G S L QV EVA+RLS L V+ T E++ Sbjct: 78 VRDFRTVRIAKGDTLHAHEIQSIRAWGTTSELQQVVTEVAQRLSN---LQDDVDLTHEHM 134 Query: 61 RLAAVQGMVLDPKDGSVLYNWFDEFGITQASEVAFNLGAGTANSLRTICNGITRSMARAA 120 L A+QG+VLD DGSV+ NW+ EFGI Q E+ F L T + +R C + R+M RAA Sbjct: 135 MLGAIQGVVLD-ADGSVIRNWYTEFGIAQPGELDFELDDPTTD-VRGKCAAVVRAMQRAA 192 Query: 121 KGSFISTTRVFALCGDSFYDLFTNHPDVIRTFVNWSDAAALRDNSQGAAFSYFDFAGITW 180 +G ++ +T+V AL GD F+D H V T++N AA LR+N AF F GI + Sbjct: 193 QGGWLPSTQVHALAGDDFFDKLIAHDHVRDTYLNQQAAAELREN---LAFDSVRFGGIVF 249 Query: 181 MNYRGSDDNSTIKIADDKVKFFPVGAPGIFREANAPGETVDWVNTPGKPVYVLPIFDTQR 240 NYRG+DDNST+ I K KF+PVG +F A +P ET D+VNTPG+P Y + I D R Sbjct: 250 HNYRGTDDNSTVAIDPGKCKFYPVGGKDVFEVAQSPAETFDFVNTPGQPSYAMLIPDRDR 309 Query: 241 RMWWKMEAYAYPLFICTRPEVLQSGRA 267 W + E Y+YPL ICTRP +LQ +A Sbjct: 310 NAWVRPEVYSYPLHICTRPGMLQRAKA 336 >ref|YP_002549663.1| hypothetical protein Avi_2319 [Agrobacterium vitis S4] gb|ACM36655.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 338 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 120/264 (45%), Positives = 166/264 (62%), Gaps = 8/264 (3%) Query: 1 MRYFDVPRLMHDDTLYATELQNIREFGQESVLMQVEAEVARRLSGPTGLLSSVEYTKEYL 60 +R F RL TLYA+E+ R FG ES L V+ E A R++ + ++++ T EY Sbjct: 78 IRDFRSVRLADGFTLYASEVAGFRAFGTESELKVVQTEYAERMAD---VRTNMDLTHEYH 134 Query: 61 RLAAVQGMVLDPKDGSVLYNWFDEFGITQASEVAFNLGAGTANSLRTICNGITRSMARAA 120 RL A+QG +LD SV+Y++FDEF I + + + L T + +R C+ +TRSMAR+A Sbjct: 135 RLGALQGKLLDANGTSVIYDYFDEFDIAEPAAIDLALDVDTTD-VRGKCHELTRSMARSA 193 Query: 121 KGSFISTTRVFALCGDSFYDLFTNHPDVIRTFVNWSDAAALRDNSQGAAFSYFDFAGITW 180 KG+F + T V AL GD FYD NHP VIRT+ NW+ AA LR N AF F F G+TW Sbjct: 194 KGAFTTATSVHALTGDEFYDTLVNHPKVIRTYENWAAAADLRQN---IAFQAFTFGGVTW 250 Query: 181 MNYRGSDDNSTIKIADDKVKFFPVGAPGIFREANAPG-ETVDWVNTPGKPVYVLPIFDTQ 239 NYRG+DDNST+ I D+ FPVGA +F++ +P E + +VNT G+ VY + I D Sbjct: 251 HNYRGTDDNSTVAIPTDEASIFPVGASNVFKKFVSPADEFMPFVNTKGQDVYAMNILDKD 310 Query: 240 RRMWWKMEAYAYPLFICTRPEVLQ 263 R W K E Y+YPL++C +P+VL+ Sbjct: 311 REAWAKGELYSYPLYMCVQPQVLR 334 >ref|YP_673778.1| phage protein GP20 [Mesorhizobium sp. BNC1] gb|ABG62613.1| phage protein GP20 [Chelativorans sp. BNC1] Length = 341 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 112/260 (43%), Positives = 162/260 (62%), Gaps = 8/260 (3%) Query: 8 RLMHDDTLYATELQNIREFGQESVLMQVEAEVARRLSGPTGLLSSVEYTKEYLRLAAVQG 67 RL TLYA E+Q IR FG E+ QV+AE RR++ + +E T EY RL A+QG Sbjct: 85 RLAKGFTLYAEEIQGIRAFGSETEFAQVQAEYLRRMAM---VRDDLELTHEYHRLGALQG 141 Query: 68 MVLDPKDGSVLYNWFDEFGITQASEVAFNLG--AGTANSLRTICNGITRSMARAAKGSFI 125 ++LD +V+YN+F EFG+ + + + F+L + ++R C + RSM R+A G+F Sbjct: 142 LLLDADGTTVIYNYFTEFGVPEPAAIDFDLDNPSPAPGAVRLKCAEVIRSMQRSAGGAFT 201 Query: 126 STTRVFALCGDSFYDLFTNHPDVIRTFVNWSDAAALRDNSQGAAFSYFDFAGITWMNYRG 185 +T V +L GD+F+D HP+V +T++NW AA LR Q +F F + ITW NYRG Sbjct: 202 PSTTVHSLVGDAFFDALITHPEVEKTYINWQAAADLR---QDRSFQSFTYGSITWHNYRG 258 Query: 186 SDDNSTIKIADDKVKFFPVGAPGIFREANAPGETVDWVNTPGKPVYVLPIFDTQRRMWWK 245 +DDNST+ I D+ KFFPVGA +F++A AP E ++NT G+ Y + I D R+ W + Sbjct: 259 TDDNSTVAIDTDEAKFFPVGARDVFKKAMAPAEFGPYINTLGQDTYAINIPDRDRQAWTR 318 Query: 246 MEAYAYPLFICTRPEVLQSG 265 E Y+YPL+ RP+VL+ G Sbjct: 319 GELYSYPLYFVQRPDVLRKG 338