BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1313.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858108.1| putative phage protein GP19 [Burkholderia ph... 168 4e-40 ref|YP_557970.1| putative phage protein Gp19 [Burkholderia xenov... 122 4e-26 ref|YP_002497732.1| hypothetical protein Mnod_2459 [Methylobacte... 118 5e-25 ref|YP_001770933.1| putative phage protein GP19 [Methylobacteriu... 92 5e-17 ref|YP_577639.1| hypothetical protein Nham_2388 [Nitrobacter ham... 91 8e-17 >ref|YP_001858108.1| putative phage protein GP19 [Burkholderia phymatum STM815] gb|ACC71062.1| putative phage protein GP19 [Burkholderia phymatum STM815] Length = 215 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 116/188 (61%), Positives = 136/188 (72%), Gaps = 1/188 (0%) Query: 7 TPLQEQWHDGGFIVSEANGHISRETVTLTGGVKVLAGTVLGQQTIGNTAAAAALGTNSGN 66 +PL EQWH GGF+VS+ GH + T TG VKV GTV+GQQT+G TAAAAALGTN+GN Sbjct: 7 SPLIEQWHAGGFLVSQPRGHRHIDRGTFTGAVKVYPGTVMGQQTVGTTAAAAALGTNTGN 66 Query: 67 GTFGAITVAAPAQAGDYAVQFADATHFVVEDPQGVEVGHGTTGVAFSGGGLGFTITAGSN 126 GTFGAITV A A+AG Y V+F DATH+VV DP G EVGHGTTGVAF+ GGLGFTITAG Sbjct: 67 GTFGAITVGA-AKAGAYTVEFDDATHYVVSDPTGKEVGHGTTGVAFNAGGLGFTITAGGT 125 Query: 127 AFVGGDSFKVTVAAGSKKYAPLSLTAADGTGVPVAVLYGTKDVTAADKQALVMFRHAELN 186 AFV GDSF VTVAAGS K+ P TA DG+ + + +G D T D ++ R E+N Sbjct: 126 AFVAGDSFTVTVAAGSGKWVPCVKTATDGSQIAAGISFGLVDATLNDTPGAIVVRDCEVN 185 Query: 187 GSELIWPA 194 SEL+W A Sbjct: 186 TSELVWDA 193 >ref|YP_557970.1| putative phage protein Gp19 [Burkholderia xenovorans LB400] gb|ABE29918.1| Putative phage protein Gp19 [Burkholderia xenovorans LB400] Length = 218 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 101/218 (46%), Positives = 129/218 (59%), Gaps = 9/218 (4%) Query: 5 TVTPLQEQWHDGGFIVSEANGHISRETVTLTGGVKVLAGTVLGQQTIGNTAAAAALGTNS 64 T TPL E HDGGF+VSE+ GH SR+ TL+G K+ AG VLG++ +G TAAAAA N+ Sbjct: 2 TQTPLIEGRHDGGFLVSESRGHRSRDRGTLSGAAKIPAGQVLGRK-VGGTAAAAAKAGNT 60 Query: 65 GNGTF---GAITVAAPAQAGDYAVQ----FADATHFVVEDPQGVEVGHGTTGVAFSGGGL 117 GNGTF V AQ G Y V+ A+ F V DP G +G G F+ + Sbjct: 61 GNGTFTLDATTPVVGNAQPGVYVVRCTTAAANGGTFRVFDPTGDVIGDVAVGATFNDQ-I 119 Query: 118 GFTITAGSNAFVGGDSFKVTVAAGSKKYAPLSLTAADGTGVPVAVLYGTKDVTAADKQAL 177 F I G+ FV GD F VTV+A SK Y PLSLTA DG+ V A+ + D T AD+ Sbjct: 120 KFVIADGATDFVVGDEFDVTVSALSKAYVPLSLTATDGSQVASAISFANVDATLADQTGT 179 Query: 178 VMFRHAELNGSELIWPAGATAPQIAAFIAQMAQSKVLL 215 V+ R E+NG EL WP GA+A QI+A AQ+A +++ Sbjct: 180 VVTRDCEVNGFELFWPTGASANQISAGTAQLAALGIIV 217 >ref|YP_002497732.1| hypothetical protein Mnod_2459 [Methylobacterium nodulans ORS 2060] gb|ACL57429.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 215 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 97/207 (46%), Positives = 122/207 (58%), Gaps = 4/207 (1%) Query: 4 PTVTPLQEQWHDGGFIVSEANGHISRETVTLTGGVKVL-AGTVLGQQTIGNTAAAAALGT 62 PT E H F+ SEA G+ SRE +T+ G VL GTVLG+ T A AAA Sbjct: 3 PTYPTFTEGRHTAEFLKSEAEGYRSRENITVASGSGVLMPGTVLGRIT-SGAATAAAKAG 61 Query: 63 NSGNGTFGAITVAAPAQAGDYAVQFADATHFVVEDPQGVEVGHGTTGVAFSGGGLGFTIT 122 N+GNGT A+T Q G Y V+F AT FVV DP G EVG G+TGVAF+ G LGFTIT Sbjct: 62 NAGNGTISAVTTGTNVQPGVYRVEFTAATKFVVVDPDGEEVGQGSTGVAFA-GPLGFTIT 120 Query: 123 AGSNAFVGGDSFKVTVAAGSKKYAPLSLTAADGTGVPVAVLYGTKDVTAADKQALVMFRH 182 AG F GD F +T+AAGS KY P L A +G+ AVLY D T+ D A + R Sbjct: 121 AGGTPFASGDGFDITIAAGSGKYVPTDLAAVNGSAQAAAVLYHRVDATSVDVLAAAIARD 180 Query: 183 AELNGSELIWPAGATAP-QIAAFIAQM 208 AE+ G+ L++ A P ++AA +A++ Sbjct: 181 AEVYGARLVYHASVDQPGEVAAKVAEL 207 >ref|YP_001770933.1| putative phage protein GP19 [Methylobacterium sp. 4-46] gb|ACA18499.1| putative phage protein GP19 [Methylobacterium sp. 4-46] Length = 223 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 83/203 (40%), Positives = 110/203 (54%), Gaps = 13/203 (6%) Query: 18 FIVSEANGHI-SRETVTLTGGVKVLAGTVLGQQTIGNTAAAAALGT--NSGNGTF---GA 71 F+VSE+ G +R+ V + +L GTVLG T+G A AAA N+GNGT G Sbjct: 14 FLVSESEGPFQTRDAVKVPVNTALLPGTVLGAYTVGAQATAAAAADAGNTGNGTIAMDGT 73 Query: 72 ITVAAPAQAGDYAVQFADATHFVVEDPQGVEVGHGTTGVAFSGGGLGFTITAGSNAFVGG 131 V A A GDY + F AT F V +P+G +G G TG AFS + FTITAG A+V G Sbjct: 74 TPVLASAIDGDYRIVFLTATTFEVINPKGKNIGKGATGAAFS-KDIKFTITAGGTAYVAG 132 Query: 132 DSFKVTVAAGS----KKYAPLSLTAADGTGVPVAVLYGTKDVTAADKQALVMFRH--AEL 185 D+ V+V S +++ PL+L+A DG+ + AAD+Q AE+ Sbjct: 133 DALTVSVGVESSTSDRRFVPLNLSATDGSQNVTGIAGYRVISNAADEQVTTAITSGPAEV 192 Query: 186 NGSELIWPAGATAPQIAAFIAQM 208 G +LIWPAG TA Q A I Q+ Sbjct: 193 RGVDLIWPAGITAAQKAEGIEQL 215 >ref|YP_577639.1| hypothetical protein Nham_2388 [Nitrobacter hamburgensis X14] gb|ABE63179.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 217 Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 5/215 (2%) Query: 6 VTPLQEQWHDGGFIVSEANGHISRETVTLTGGVKVLAGTVLGQQTIGNTAAA---AALGT 62 +T L E H G +++EANG+ SRE++T+ + A T+L ++ + A AA+G Sbjct: 1 MTTLNEGRHPGEAVMTEANGNRSRESLTIAAEQTIEANTILAKRAVAADVVATPSAAVGN 60 Query: 63 NSGNGT--FGAITVAAPAQAGDYAVQFADATHFVVEDPQGVEVGHGTTGVAFSGGGLGFT 120 + GT G V + + G Y AT EDP G E+G T G FS GG+ FT Sbjct: 61 TASAGTVAMGTPPVTSKVKDGRYKGIAVTATTVSWEDPDGKEIGVSTHGTEFSKGGVKFT 120 Query: 121 ITAGSNAFVGGDSFKVTVAAGSKKYAPLSLTAADGTGVPVAVLYGTKDVTAADKQALVMF 180 ITAG +A V GD F + VAA ++ + ++ ADG + +Y + + + Sbjct: 121 ITAGGSANVAGDEFYIDVAADAEDFEHIAYAVADGLPIGGIAIYPATTGASETAKIAAIV 180 Query: 181 RHAELNGSELIWPAGATAPQIAAFIAQMAQSKVLL 215 R AE+NG + WPAG TA Q A ++A +++ Sbjct: 181 RDAEVNGHCIAWPAGITAAQKADATQELAAIGIIV 215