BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1312.p         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_557969.1| hypothetical protein Bxe_A3062 [Burkholderia xe...    69   3e-10
ref|YP_001858109.1| hypothetical protein Bphy_1884 [Burkholderia...    54   9e-06

>ref|YP_557969.1| hypothetical protein Bxe_A3062 [Burkholderia xenovorans LB400]
 gb|ABE29917.1| Hypothetical protein Bxe_A3062 [Burkholderia xenovorans LB400]
          Length = 201

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 85/176 (48%), Positives = 105/176 (59%), Gaps = 18/176 (10%)

Query: 40  DDPDKKEQDREDNTGKKGKRAEDGDQEKD----KAEGDDP--DDEEKDQAKADDQDAEDD 93
           DD    +         +G+   DGDQ ++    KAEG+DP  DD+   + +A  +D +DD
Sbjct: 28  DDTPPPDDKGGKKGKAEGEDTGDGDQNRENGDGKAEGEDPPPDDKGGKKGEAKGEDGQDD 87

Query: 94  DEEEE-------MRGKSAAASARRRERARCAAIFGSRAAGRNPVLAANLAFNTSMTRKEA 146
              E+       MRG SAAA+ARRRER RCA I GS AAGRNPVLAANLAFNTSMTRKEA
Sbjct: 88  QAAEDDDDDEEEMRGNSAAANARRRERMRCAQIMGSTAAGRNPVLAANLAFNTSMTRKEA 147

Query: 147 LAVLESTPASMANAEFAGGRAARNPSIGSGAPSANRAQQT-ASRWDAAFKKASGRR 201
           LAVL  TPA  A A      + RNPS+G+G      ++Q  AS W+ A +KA   R
Sbjct: 148 LAVLTGTPAPAATAPV----SRRNPSLGAGGERGVSSEQAIASSWNTAMQKARPAR 199


>ref|YP_001858109.1| hypothetical protein Bphy_1884 [Burkholderia phymatum STM815]
 gb|ACC71063.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 219

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 21/212 (9%)

Query: 10  AKVLSFAHLTGVA--GKRAEED---DKDRREEADDDDPDKKEQDREDNTGKKGKRAED-- 62
           A+ LSFAHL G+   G RAE+D   D +R EE D ++ D+ + D + + GKKGKRAED  
Sbjct: 8   ARGLSFAHLAGIKPRGARAEDDRQEDDERAEEQDQEEQDRDDGDAKGSKGKKGKRAEDRT 67

Query: 63  ------------GDQEKDKAEGDDPDDEEKDQAKADDQDAEDDDEEEEMRGKSAAASARR 110
                        + +  K +     ++++     DD D + +D+++EMRGKSA A ARR
Sbjct: 68  DDPDAEDEENDEVENDSGKGKKGKRAEDDEADEGDDDSDPDAEDDDDEMRGKSAVARARR 127

Query: 111 RERARCAAIFGSRAAGRNPVLAANLAFNTSMTRKEALAVLESTPASMANAEFAGGRAARN 170
           RE+ARCAAI GS+ A RN  +AANLAF T MTR+EALAVL S P+  A  + +  RA RN
Sbjct: 128 REQARCAAIMGSKYAARNVEMAANLAFKTRMTRQEALAVLRSAPSGAATPQ-SQRRADRN 186

Query: 171 PSIGSGAPSANRAQQTASR-WDAAFKKASGRR 201
           P +G+G       Q+ AS  WD AF KA+G+R
Sbjct: 187 PQLGAGGEMQRNPQREASAGWDRAFTKATGKR 218