BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1311.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_557968.1| serine peptidase [Burkholderia xenovorans LB400... 343 2e-92 ref|YP_001858110.1| peptidase S49 [Burkholderia phymatum STM815]... 304 1e-80 ref|ZP_08038782.1| peptidase family S49 domain-containing protei... 301 1e-79 ref|ZP_03045950.1| putative peptidase, S49 (protease IV) family ... 294 1e-77 ref|YP_001458776.1| S49 family peptidase [Escherichia coli HS] >... 290 2e-76 >ref|YP_557968.1| serine peptidase [Burkholderia xenovorans LB400] gb|ABE29916.1| protein C, Serine peptidase, MEROPS family S49 [Burkholderia xenovorans LB400] Length = 293 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 193/297 (64%), Positives = 232/297 (78%), Gaps = 4/297 (1%) Query: 1 MTNLPFLAQRLFNTPLAITPGKAEVVMAALAERFGITRLFRMDGHALDFTDASVAAGVIA 60 M+N P LA RLFN P+AI P KAE+VMAALA+RFGI ++FR G + D A + + Sbjct: 1 MSNYPHLATRLFNVPIAIAPQKAEIVMAALADRFGIAKMFRGGGDVVVLADGGAQAFLQS 60 Query: 61 SDSFGAPRDSERRGYEVIEGVAIIPVQGTLVQKLGTLRPYSGMTGYDGIRANLSMALEDA 120 +++ ++ R YEV+EGVAI+P++GTLV KLG LRPYSGMTGYDGIRANLSMA+ D Sbjct: 61 ANT----SQADYRPYEVVEGVAIVPIEGTLVHKLGELRPYSGMTGYDGIRANLSMAMADE 116 Query: 121 AVRGIAFDIDSPGGEVAGLFDLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHISVP 180 +VR I DIDSPGGEVAG FDLVD++Y R +KP+ AI +E+AYSA YAIA+A I VP Sbjct: 117 SVRAIVLDIDSPGGEVAGCFDLVDSIYAARDVKPIWAICTESAYSAAYAIATAASRIIVP 176 Query: 181 RTGGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQADIDA 240 RTGGTGSVGVICMHVDFS+ALT AGI V +I++GD+KADG PLSK+A FQ+D+DA Sbjct: 177 RTGGTGSVGVICMHVDFSQALTKAGIEVELIYFGDKKADGSDMKPLSKDARARFQSDVDA 236 Query: 241 MGSLFVETVARNRGMKVSAVRATQATTFLGATGVEIGFADAVMAPDKAFQSLLSELG 297 MG LFVETVARNRG+ + VR TQA TFLGA GVEIGFADAVM+PD+AF SLL ELG Sbjct: 237 MGQLFVETVARNRGLTTANVRGTQAGTFLGAAGVEIGFADAVMSPDEAFASLLDELG 293 >ref|YP_001858110.1| peptidase S49 [Burkholderia phymatum STM815] gb|ACC71064.1| peptidase S49 [Burkholderia phymatum STM815] Length = 292 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 175/300 (58%), Positives = 210/300 (70%), Gaps = 11/300 (3%) Query: 1 MTNLPFLAQRLFNTPLAITPGKAEVVMAALAERFGITRLFRMDGHALDFT-DASVAAGVI 59 M PF A R+F+ PLAI P K +V+ LA RFGI+ + +F +A V + Sbjct: 1 MKTYPFAAARVFDVPLAIHPTKGQVIAKVLAGRFGISDV--------EFAGEAPVFVKPM 52 Query: 60 ASDSF--GAPRDSERRGYEVIEGVAIIPVQGTLVQKLGTLRPYSGMTGYDGIRANLSMAL 117 A D + G E Y++ +GVA+I V GTLVQK LRPYSGM GY+ IR N AL Sbjct: 53 AYDEWDDGPSEQYEETPYDLTQGVAVIDVSGTLVQKSSNLRPYSGMLGYNAIRHNFLAAL 112 Query: 118 EDAAVRGIAFDIDSPGGEVAGLFDLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHI 177 +D V+ I IDSPGGEVAG FDL D +Y R +KP AIL+E+ YSA YA+ASAC+ I Sbjct: 113 DDKKVKAIVLSIDSPGGEVAGCFDLADLIYESRSVKPTLAILNESGYSAAYALASACEQI 172 Query: 178 SVPRTGGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQAD 237 +VPRTGGTGSVGVICMHVD SKA+ AG+ VT+I YGDRKADG+ PLSKEAL +QA+ Sbjct: 173 TVPRTGGTGSVGVICMHVDQSKAIDKAGLTVTIIKYGDRKADGNQFNPLSKEALDRYQAE 232 Query: 238 IDAMGSLFVETVARNRGMKVSAVRATQATTFLGATGVEIGFADAVMAPDKAFQSLLSELG 297 +D MG LFV+TVARNR + VR TQATTFLGA GVEIGFADAVMAPD+AF+SLL ELG Sbjct: 233 VDEMGELFVQTVARNRNLSADVVRKTQATTFLGAAGVEIGFADAVMAPDEAFRSLLKELG 292 >ref|ZP_08038782.1| peptidase family S49 domain-containing protein [Serratia symbiotica str. Tucson] gb|EFW12757.1| peptidase family S49 domain-containing protein [Serratia symbiotica str. Tucson] Length = 286 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 169/295 (57%), Positives = 205/295 (69%), Gaps = 11/295 (3%) Query: 3 NLPFLAQRLFNTPLAITPGKAEVVMAALAERFGITRLFRMDGHALDFTDASVAAGVIASD 62 NLP LAQRLFNTPLA+ P KAEVVMAA+ ERFGITR+ + L D Sbjct: 2 NLPHLAQRLFNTPLALHPHKAEVVMAAMMERFGITRINTLASDWLG-----------EDD 50 Query: 63 SFGAPRDSERRGYEVIEGVAIIPVQGTLVQKLGTLRPYSGMTGYDGIRANLSMALEDAAV 122 SF + GY+V+ G+A+IPVQGTLVQKLG+LRPYSGMTGYDGIR + A+ D V Sbjct: 51 SFSRKARKQDAGYDVVGGIAVIPVQGTLVQKLGSLRPYSGMTGYDGIRQSFLTAMNDPEV 110 Query: 123 RGIAFDIDSPGGEVAGLFDLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHISVPRT 182 GI DIDSPGGEVAG FDLVD +Y G KP+H+IL+E AYSA YAIASA D I VPRT Sbjct: 111 AGICLDIDSPGGEVAGCFDLVDEIYHTHGSKPIHSILTENAYSAAYAIASAADRIHVPRT 170 Query: 183 GGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQADIDAMG 242 GG GS+GVI +H D+S+ + G+AV++I YG+RKA+ + + LS +A Q D+D MG Sbjct: 171 GGVGSIGVIVIHCDWSQRIKEDGLAVSIITYGNRKAESNPYVKLSDQARAAIQDDVDTMG 230 Query: 243 SLFVETVARNRGMKVSAVRATQATTFLGATGVEIGFADAVMAPDKAFQSLLSELG 297 LFV TVARNRG+ +R TQA FL A GV++G ADAVM PD AF+ L +E G Sbjct: 231 RLFVSTVARNRGISEKTIRNTQAACFLAADGVQLGLADAVMTPDAAFRKLFTEAG 285 >ref|ZP_03045950.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22] gb|EDV82175.1| putative peptidase, S49 (protease IV) family [Escherichia coli E22] Length = 288 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 171/300 (57%), Positives = 212/300 (70%), Gaps = 19/300 (6%) Query: 3 NLPFLAQRLFNTPLAITPGKAEVVMAALAERFGITRLFRMDGHALDFTDASVAAGVIASD 62 NLP LAQRLFNTPLA+ P KAEV+MA++ +RFGI+++ ++S+A + D Sbjct: 2 NLPHLAQRLFNTPLALHPSKAEVIMASVMDRFGISKI-----------ESSLA---MEDD 47 Query: 63 SFGAP--RDSERR---GYEVIEGVAIIPVQGTLVQKLGTLRPYSGMTGYDGIRANLSMAL 117 +G R E R GY+ + GVA+IP+ GTLVQKLG+LRPYSGMTGYDGIR A+ Sbjct: 48 WYGYDDNRGRESRSDPGYDNVLGVAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAM 107 Query: 118 EDAAVRGIAFDIDSPGGEVAGLFDLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHI 177 ED + GI DIDSPGGEVAG FDLVD +YG RG KP+HAIL+E+AYSA YAIASA D I Sbjct: 108 EDPDISGICLDIDSPGGEVAGCFDLVDVIYGSRGKKPIHAILTESAYSAAYAIASAADRI 167 Query: 178 SVPRTGGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQAD 237 SVPRTGG GSVGVI MH+D+++ + G+ VT+I YG RKA+G LS EAL Q D Sbjct: 168 SVPRTGGVGSVGVITMHLDWTQRIKDDGLKVTIITYGSRKAEGSPLRELSDEALAAIQQD 227 Query: 238 IDAMGSLFVETVARNRGMKVSAVRATQATTFLGATGVEIGFADAVMAPDKAFQSLLSELG 297 I+ MG LFV TVARNRG+ +++TQA F+ A GVEIG AD V PD AF++LL + G Sbjct: 228 INTMGELFVNTVARNRGISAKVIKSTQAACFMAADGVEIGLADEVCPPDAAFKNLLEKTG 287 >ref|YP_001458776.1| S49 family peptidase [Escherichia coli HS] gb|ABV06393.1| putative peptidase, S49 (protease IV) family [Escherichia coli HS] Length = 288 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 169/300 (56%), Positives = 211/300 (70%), Gaps = 19/300 (6%) Query: 3 NLPFLAQRLFNTPLAITPGKAEVVMAALAERFGITRLFRMDGHALDFTDASVAAGVIASD 62 NLP LAQRLFNTPLA+ P KAEV+MA++ +RFGI+++ ++S+A + D Sbjct: 2 NLPHLAQRLFNTPLALHPSKAEVIMASVMDRFGISKI-----------ESSLA---MDDD 47 Query: 63 SFGAP--RDSERR---GYEVIEGVAIIPVQGTLVQKLGTLRPYSGMTGYDGIRANLSMAL 117 +G R E R GY+ + GVA+IP+ GTLVQKLG+LRPYSGMTGYDGIR A+ Sbjct: 48 WYGYDDNRGRESRSDPGYDNVLGVAVIPICGTLVQKLGSLRPYSGMTGYDGIRQAFLTAM 107 Query: 118 EDAAVRGIAFDIDSPGGEVAGLFDLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHI 177 ED + GI DIDSPGGEVAG FDLVD +YG RG KP+HAIL+E+AYSA YAIASA D I Sbjct: 108 EDPDITGICLDIDSPGGEVAGCFDLVDVIYGARGKKPIHAILTESAYSAAYAIASAADRI 167 Query: 178 SVPRTGGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQAD 237 SVPRT G GSVGVI MH+D+++ + G+ VT+I YG RKA+G LS EAL Q D Sbjct: 168 SVPRTAGVGSVGVITMHLDWTQRIKDDGLKVTIITYGSRKAEGAPLRELSDEALAAIQQD 227 Query: 238 IDAMGSLFVETVARNRGMKVSAVRATQATTFLGATGVEIGFADAVMAPDKAFQSLLSELG 297 I+ MG LFV TVARNRG+ +++TQA F+ A GVE+G AD V PD AF++LL + G Sbjct: 228 INTMGELFVNTVARNRGISAKVIKSTQAACFMAADGVELGLADEVCPPDAAFRNLLEKTG 287