BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1310.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858112.1| lambda family phage portal protein [Burkhold... 711 0.0 ref|YP_557967.1| putative phage portal protein Gp17 [Burkholderi... 703 0.0 ref|ZP_04617680.1| Bacteriophage capsid structural protein [Yers... 516 e-144 ref|ZP_03045897.1| phage portal protein, lambda family [Escheric... 506 e-141 ref|YP_001458777.1| lambda family phage portal protein [Escheric... 495 e-138 >ref|YP_001858112.1| lambda family phage portal protein [Burkholderia phymatum STM815] gb|ACC71066.1| phage portal protein, lambda family [Burkholderia phymatum STM815] Length = 556 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 367/553 (66%), Positives = 429/553 (77%), Gaps = 14/553 (2%) Query: 1 MTTILDASGRPIQRASPAHARPSASLNGSAP--------SVFPYDAASWQTQEMGDWLPW 52 MT I+D++G+P PA R A P S+FPY+A++ QT EMG W P+ Sbjct: 1 MTLIVDSTGKPFADL-PAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPY 59 Query: 53 IRSPDSEINQFRDRMVARQRDLVRNDGLASGGITRILDNTVGASLKLSAMPDYMALQTLT 112 IRSPDSEINQFRDRMVAR RDL RNDG ASGGITRILDNTVGA L+LSA PDY +L Sbjct: 60 IRSPDSEINQFRDRMVARSRDLARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRA 119 Query: 113 SLRTFDAQWAVEFRRAAEALWRTYSEDLGRYGDVSRQLTTSQQLRLAMRHKLVDGDALMM 172 R FDA WA EFRRA EALWR YSED+ + DVSRQLT SQQLRLA+RHKL+DG++L + Sbjct: 120 --RGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQLRLALRHKLIDGESLFV 177 Query: 173 AYWLPERIGVGAARYATAWQVVDPDRLSNPYQIMDTKHMRGGVEIDDFGVPLAYHIRKAE 232 +YW+PERIGVG ARYAT++ ++DPDRLSNPYQI+DTK++RGGVEIDD+GVPLAYHIR+A Sbjct: 178 SYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAH 237 Query: 233 QNDWYNAVEANTWERIEREDPDGWIRVIHDFERDRAGQNRGIGVFTSVIARFKMLARYYG 292 QNDWYNAVE+ WER+ R D DGW RV+HDFERDRAGQNRGIGVFT V+A KMLARYYG Sbjct: 238 QNDWYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYG 297 Query: 293 VELQAATIAATFGTYVKSPYDPALVQDALDGDSEELSRYQQLRVDWQNERPAMLNGARIP 352 VELQAAT+A FGTYV SP+DP +++ A+D D EEL YQ LR DW ERPAMLN RIP Sbjct: 298 VELQAATVATIFGTYVTSPFDPKMIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIP 357 Query: 353 TLAPGESIEQVAAAHPHSGFGEFVREMQRSFAAASGISAEQISQDWSQTNYSSARAALLE 412 TLAPGE I+QV AAHPHSGFGEF EM RS AAA G+SAEQI+QDWS+TNYSSARAA+LE Sbjct: 358 TLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQDWSRTNYSSARAAMLE 417 Query: 413 SWKTLTRRSAEFKTNTATPVYAGVLHEMMDRGHLP--LPAGAPSFLEARTAYSKCAWLGV 470 SWKTL+RRSA+FK TATP+YA L E M+ G L LP AP ++EA T YS+C WLGV Sbjct: 418 SWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGV 477 Query: 471 ARGWVDPVKEKQGAILGMDAGLSTLQRECAEQGLDYEEVIAQRAIEVQMFKDNGLPPPKW 530 RG+VD KE GA++ MD GLSTL+ E EQG D+EEV+ QRA+EV+MFK+ GL PP W Sbjct: 478 GRGYVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDW 537 Query: 531 YSD-DANSASEPE 542 + A +PE Sbjct: 538 AGEVAAAEVGKPE 550 >ref|YP_557967.1| putative phage portal protein Gp17 [Burkholderia xenovorans LB400] gb|ABE29915.1| Putative phage portal protein Gp17 [Burkholderia xenovorans LB400] Length = 551 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 353/545 (64%), Positives = 423/545 (77%), Gaps = 2/545 (0%) Query: 4 ILDASGRPIQRASPAHARPSASLNGSAPSVFPYDAASWQTQEMGDWLPWIRSPDSEINQF 63 ++DASGRP++ + A P N + FPY AA WQTQEMG WLPWIRSPD+EINQF Sbjct: 7 LVDASGRPLRARANTGAGPGTLANNVGRAFFPYQAADWQTQEMGAWLPWIRSPDAEINQF 66 Query: 64 RDRMVARQRDLVRNDGLASGGITRILDNTVGASLKLSAMPDYMALQTLTSLRTFDAQWAV 123 RDRMVAR RD VRNDG +SGGITRILDN VGASL+LSA PDY AL ++ FD +WA Sbjct: 67 RDRMVARSRDQVRNDGRSSGGITRILDNAVGASLRLSAAPDYRALAEISG-AAFDIKWAN 125 Query: 124 EFRRAAEALWRTYSEDLGRYGDVSRQLTTSQQLRLAMRHKLVDGDALMMAYWLPERIGVG 183 EFRRA EA WR +S D GRY DVSRQLT SQQLRLA+RHKL+DG+ L++ YW+PER+G G Sbjct: 126 EFRRAVEARWRLFSNDFGRYNDVSRQLTVSQQLRLALRHKLIDGEDLVINYWMPERVGRG 185 Query: 184 AARYATAWQVVDPDRLSNPYQIMDTKHMRGGVEIDDFGVPLAYHIRKAEQNDWYNAVEAN 243 ARYATA+ VVDPDRLSNP Q++DT+HMR GVE+D+ GVPLAYHIRKA QNDWYN+VE+ Sbjct: 186 GARYATAYLVVDPDRLSNPNQMVDTRHMRNGVEVDENGVPLAYHIRKAHQNDWYNSVESM 245 Query: 244 TWERIEREDPDGWIRVIHDFERDRAGQNRGIGVFTSVIARFKMLARYYGVELQAATIAAT 303 WER+ERED DGW+RVIHDFERDRAGQNRG+GVF V+A KMLARYYG+ELQAA +AA+ Sbjct: 246 IWERVEREDDDGWLRVIHDFERDRAGQNRGVGVFIPVLAHAKMLARYYGIELQAAALAAS 305 Query: 304 FGTYVKSPYDPALVQDALDGDSEELSRYQQLRVDWQNERPAMLNGARIPTLAPGESIEQV 363 GTYV SPYDP+ VQDA+ G+ EL YQ LR +W ERPAM NG R+P LAPGE I+ Sbjct: 306 IGTYVTSPYDPSEVQDAVGGEDHELGYYQGLRAEWNEERPAMFNGVRVPALAPGEDIKAF 365 Query: 364 AAAHPHSGFGEFVREMQRSFAAASGISAEQISQDWSQTNYSSARAALLESWKTLTRRSAE 423 + HPH+GF EFV EMQ A+A GIS EQ++QDWS++NYS+ R +LLESWKTL RR E Sbjct: 366 TSDHPHNGFTEFVHEMQGCVASALGISLEQVTQDWSRSNYSNMRGSLLESWKTLIRRRLE 425 Query: 424 FKTNTATPVYAGVLHEMMDRGHLPLPAGAPSFLEARTAYSKCAWLGVARGWVDPVKEKQG 483 F TATP+YA L E M+ G LPLPAGAP FL+ TAY+ C+WLG ARGWVDPVKE QG Sbjct: 426 FSAGTATPMYAVWLRESMENGELPLPAGAPDFLDGVTAYAGCSWLGPARGWVDPVKEPQG 485 Query: 484 AILGMDAGLSTLQRECAEQGLDYEEVIAQRAIEVQMFKDNGLPPPKW-YSDDANSASEPE 542 +IL MDA L+TL++E AEQG D+EE++ QR IE++ F++ G+P P+W S+ A EP Sbjct: 486 SILKMDAALTTLKQEAAEQGSDWEELLDQRQIEIEAFRERGIPLPEWGGSEMATRTDEPP 545 Query: 543 QGDEA 547 Q +A Sbjct: 546 QEPQA 550 >ref|ZP_04617680.1| Bacteriophage capsid structural protein [Yersinia ruckeri ATCC 29473] gb|EEP97834.1| Bacteriophage capsid structural protein [Yersinia ruckeri ATCC 29473] Length = 544 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 287/546 (52%), Positives = 368/546 (67%), Gaps = 11/546 (2%) Query: 4 ILDASGRPIQRASPAHARPSASLNGSAPSVFPYDAASWQTQEMGDWLPWIRSPDSEINQF 63 IL GRP+ +P+ +R S LNGS PYDAA + M +W P + SPD+EIN + Sbjct: 7 ILGPDGRPL---APSRSRASM-LNGSGG--VPYDAADSFSDSMANWQPALWSPDNEINIY 60 Query: 64 RDRMVARQRDLVRNDGLASGGITRILDNTVGASLKLSAMPDYMALQTLTSLRTFDAQWAV 123 RDR+V+R RD+VRNDG ASG +TRILDN VGA + A DY L +T + FDA+WA Sbjct: 61 RDRVVSRVRDMVRNDGWASGSVTRILDNAVGADFRPLAKVDYRTLALMTGNKAFDAKWAD 120 Query: 124 EFRRAAEALWRTYSEDLGRYGDVSRQLTTSQQLRLAMRHKLVDGDALMMAYWLPERIGVG 183 E+ RA E+ WRT++ D GRY DV R+ T SQ LRLA RHKL DGDAL + + P+R+G G Sbjct: 121 EYGRAVESGWRTWANDPGRYSDVERKKTVSQLLRLAFRHKLTDGDALCVMQYRPDRLGYG 180 Query: 184 AARYATAWQVVDPDRLSNPYQIMDTKHMRGGVEIDDFGVPLAYHIRKAEQNDWYNAVEAN 243 A+YATA QVVDPDRL NP Q D +RGGVEID GVP+AYHIRKA DW++ Sbjct: 181 RAQYATAMQVVDPDRLCNPQQNFDMPTIRGGVEIDADGVPVAYHIRKAHMGDWWSGAATM 240 Query: 244 TWERIEREDPDGWIRVIHDFERDRAGQNRGIGVFTSVIARFKMLARYYGVELQAATIAAT 303 TWERI RE P G VIHDF+ +RA Q+RGI +FT ++ R KML +Y VEL+A+ + + Sbjct: 241 TWERIPRETPWGRPIVIHDFDAERASQHRGISIFTPIVQRLKMLIKYDQVELEASILNSV 300 Query: 304 FGTYVKSPYDPALVQDALDGDSEELSRYQQLRVDWQNE-RPAMLNGARIPTLAPGESIEQ 362 F Y+ SPYDP LV DALD D ++S+YQ LR ++ +E R ++ +GARIP LAPGES+ Sbjct: 301 FAAYITSPYDPQLVGDALDND--DVSKYQDLRREFHDEKRISLQSGARIPILAPGESMTT 358 Query: 363 VAAAHPHSGFGEFVREMQRSFAAASGISAEQISQDWSQTNYSSARAALLESWKTLTRRSA 422 + AA P S F F R+ AAA GIS +Q++QDWS NYSSAR+A+LE+WKTLTRR Sbjct: 359 LNAARPTSNFTAFESAALRNVAAALGISTQQLTQDWSDVNYSSARSAMLEAWKTLTRRRD 418 Query: 423 EFKTNTATPVYAGVLHEMMDRGHLPLPAGAPSFLEARTAYSKCAWLGVARGWVDPVKEKQ 482 +F A P+ + + E+ D G +PLPAGAP FL A+ AY + W+G RGWVDPV EK+ Sbjct: 419 DFAAGMAQPILSCFIEELHDLGEVPLPAGAPDFLAAKAAYCRAQWMGPGRGWVDPVAEKK 478 Query: 483 GAILGMDAGLSTLQRECAEQ-GLDYEEVIAQRAIEVQMFKDNGLPPPKWYSDDANSASEP 541 GAILGM+AGLSTL+ E AE G D+EE++ QR E Q + + LP P W + A + Sbjct: 479 GAILGMEAGLSTLEMEAAENVGEDWEELLDQRQRERQAYIERDLPIPTWLQAE-TFAPDQ 537 Query: 542 EQGDEA 547 +Q EA Sbjct: 538 QQKPEA 543 >ref|ZP_03045897.1| phage portal protein, lambda family [Escherichia coli E22] gb|EDV82122.1| phage portal protein, lambda family [Escherichia coli E22] Length = 525 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 266/519 (51%), Positives = 350/519 (67%), Gaps = 7/519 (1%) Query: 32 SVFPYDAASWQTQEMGDWLPWIRSPDSEINQFRDRMVARQRDLVRNDGLASGGITRILDN 91 S PYDAA + ++ +W P + SPD+EIN +RDR+V+R RDLVRNDG A+G +TR+LDN Sbjct: 6 SRVPYDAADSFSDQLANWQPALWSPDNEINIYRDRIVSRARDLVRNDGWANGAVTRLLDN 65 Query: 92 TVGASLKLSAMPDYMALQTLTSLRTFDAQWAVEFRRAAEALWRTYSEDLGRYGDVSRQLT 151 VGA+ + PDY L+ +T + FDA WA E+ +A + WRT+S D GRY DV R+LT Sbjct: 66 AVGANFRPIMKPDYRVLRMITGNKAFDASWAEEYGKALDGHWRTWSNDPGRYCDVERKLT 125 Query: 152 TSQQLRLAMRHKLVDGDALMMAYWLPERIGVGAARYATAWQVVDPDRLSNPYQIMDTKHM 211 SQ LRL RHKL+DGDAL + + +R+G G RYAT Q+VDPDRLSNP Q D ++ Sbjct: 126 VSQMLRLGFRHKLIDGDALAILQYRTDRLGPGRGRYATTVQIVDPDRLSNPQQNFDMPNV 185 Query: 212 RGGVEIDDFGVPLAYHIRKAEQNDWYNAVEANTWERIEREDPDGWIRVIHDFERDRAGQN 271 RGGVEID G P+AYHIR+A DW++ + TW+RI RE G V+HDF+ +R Q+ Sbjct: 186 RGGVEIDADGAPVAYHIREAHIGDWWSGAKTMTWQRIPRETDWGRPHVVHDFDHERGAQH 245 Query: 272 RGIGVFTSVIARFKMLARYYGVELQAATIAATFGTYVKSPYDPALVQDALDG--DSEELS 329 RG G+ T VI R KML +Y EL+AA + A F Y++SPYDPA+VQ AL D EL Sbjct: 246 RGNGILTPVIQRLKMLVKYDQSELEAAILNAIFAAYIESPYDPAMVQSALGETYDESELG 305 Query: 330 RYQQLRVDWQNERPAML-NGARIPTLAPGESIEQVAAAHPHSGFGEFVREMQRSFAAASG 388 YQ RV++ N+R L NGAR+P L PGE I V AA P+S F F + R+F++ +G Sbjct: 306 TYQDGRVEFHNDRRLTLQNGARMPILYPGEKITTVNAARPYSNFEVFESAVLRNFSSGTG 365 Query: 389 ISAEQISQDWSQTNYSSARAALLESWKTLTRRSAEFKTNTATPVYAGVLHEMMDRGHLPL 448 +S +Q++QDWS NYSSAR++LLE+WKTLTRR +F T A P+ + E+ D LPL Sbjct: 366 LSPQQVTQDWSDVNYSSARSSLLEAWKTLTRRRDDFSTGFAQPILTAFVEEVHDNEDLPL 425 Query: 449 PAGAPSFLEARTAYSKCAWLGVARGWVDPVKEKQGAILGMDAGLSTLQRECAEQ-GLDYE 507 PAGAP F++AR AYS+ W+G RGWVDPV EK+GAILG+DAGLSTL+ E E G D+E Sbjct: 426 PAGAPDFVDARAAYSRARWMGPGRGWVDPVAEKKGAILGLDAGLSTLEIEVGENVGEDWE 485 Query: 508 EVIAQRAIEVQMFKDNGLPPPKWYSDD---ANSASEPEQ 543 EV+ QR E++ GLP P W D + + ++PE+ Sbjct: 486 EVLDQRQREIESCLKRGLPLPSWAQADQFASQTITDPEE 524 >ref|YP_001458777.1| lambda family phage portal protein [Escherichia coli HS] gb|ABV06394.1| phage portal protein, lambda family [Escherichia coli HS] Length = 524 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 260/518 (50%), Positives = 347/518 (66%), Gaps = 6/518 (1%) Query: 32 SVFPYDAASWQTQEMGDWLPWIRSPDSEINQFRDRMVARQRDLVRNDGLASGGITRILDN 91 S PYDA + ++ +W P + SPD+EIN +RDR+V+R RDLVRNDG A+G ITR+LDN Sbjct: 6 SRVPYDAGDSFSDQLANWQPALWSPDNEINIYRDRIVSRARDLVRNDGWANGAITRLLDN 65 Query: 92 TVGASLKLSAMPDYMALQTLTSLRTFDAQWAVEFRRAAEALWRTYSEDLGRYGDVSRQLT 151 VGA+ + PDY L+ +T ++FDA WA E+ +A + WRT++ D GRY DV R+LT Sbjct: 66 AVGANFRPIMKPDYRVLRMMTGNKSFDAVWAEEYGKALASHWRTWAYDTGRYCDVERKLT 125 Query: 152 TSQQLRLAMRHKLVDGDALMMAYWLPERIGVGAARYATAWQVVDPDRLSNPYQIMDTKHM 211 Q LRLA RHKL+DGDALM+ + +R+G G RYAT QVVDPDRLSNP Q D ++ Sbjct: 126 VPQMLRLAFRHKLIDGDALMVLQYRTDRLGPGKGRYATTVQVVDPDRLSNPQQNFDMPNI 185 Query: 212 RGGVEIDDFGVPLAYHIRKAEQNDWYNAVEANTWERIEREDPDGWIRVIHDFERDRAGQN 271 RGGVEID G P+AYHIR+A DW++ + TW RI RE G V+HDF+ +R Q+ Sbjct: 186 RGGVEIDADGAPVAYHIREAHIGDWWSGAKTMTWRRIPRETAWGRPHVVHDFDHERGAQH 245 Query: 272 RGIGVFTSVIARFKMLARYYGVELQAATIAATFGTYVKSPYDPALVQDALDGDSEE-LSR 330 RG G+ T V+ R KML +Y EL+AA + A F Y++SPYDP ++Q AL + EE L Sbjct: 246 RGNGILTPVVQRLKMLVKYDQSELEAAILNAIFAAYIESPYDPEMIQSALGENFEEGLGA 305 Query: 331 YQQLRVDWQNERPAML-NGARIPTLAPGESIEQVAAAHPHSGFGEFVREMQRSFAAASGI 389 YQ R ++ N+R L NGAR+P L PGE I V AA P+S F F + R+F++ +G+ Sbjct: 306 YQDGRAEFHNDRRLTLQNGARMPILYPGERITTVNAARPYSNFEVFESAVLRNFSSGTGL 365 Query: 390 SAEQISQDWSQTNYSSARAALLESWKTLTRRSAEFKTNTATPVYAGVLHEMMDRGHLPLP 449 S +Q++QDWS NYSSAR++LLE+WKTLTRR +F TA P+ + E+ D LPLP Sbjct: 366 SPQQVTQDWSDVNYSSARSSLLEAWKTLTRRRDDFSMGTAQPLLTAFVEEVHDNEDLPLP 425 Query: 450 AGAPSFLEARTAYSKCAWLGVARGWVDPVKEKQGAILGMDAGLSTLQRECAEQ-GLDYEE 508 AP F++AR AYS+ W+G RGWVDPV EK+GAILG+DAGLSTL+ E E G D+EE Sbjct: 426 NDAPDFVDARAAYSRARWMGPGRGWVDPVAEKKGAILGLDAGLSTLEIEVGENVGEDWEE 485 Query: 509 VIAQRAIEVQMFKDNGLPPPKWYSDD---ANSASEPEQ 543 ++ QR E++ GLP P W D + + ++PE+ Sbjct: 486 ILDQRQREIESCLKRGLPLPSWAQADQFASQTITDPEE 523