BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1309.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06898895.1| gpW family protein [Roseomonas cervicalis ATC...    63   1e-08
ref|ZP_08318826.1| hypothetical protein SXCC_04791 [Gluconacetob...    60   8e-08
ref|ZP_04629943.1| hypothetical protein yberc0001_14920 [Yersini...    55   4e-06

>ref|ZP_06898895.1| gpW family protein [Roseomonas cervicalis ATCC 49957]
 gb|EFH09397.1| gpW family protein [Roseomonas cervicalis ATCC 49957]
          Length = 84

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 48/73 (65%)

Query: 10 DLANVPIDTLRQWQIDALQAMHDLSTGKKRVTISYSQGDGTRSVTYQQANMDDLRAWLAK 69
          DL+ +  DTL  W   ALQAM  L TG++  ++S+   DG+R+V+Y QA++ DLRAW+A 
Sbjct: 2  DLSAIDNDTLTLWHSQALQAMQSLLTGRREASLSHGGPDGSRAVSYTQASLPDLRAWIAS 61

Query: 70 LNAQLGLGSRRRP 82
          L ++LG     RP
Sbjct: 62 LASELGRRGMARP 74


>ref|ZP_08318826.1| hypothetical protein SXCC_04791 [Gluconacetobacter sp. SXCC-1]
 gb|EGG74687.1| hypothetical protein SXCC_04791 [Gluconacetobacter sp. SXCC-1]
          Length = 98

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 2  SNYDPATSDLANVPIDTLRQWQIDALQAMHDLSTGKKRVTISYSQGDGTRSVTYQQANMD 61
          + Y+PATS LA +    L+     A Q +  L +G+K V++SY+QGDG+RSVTY QA++ 
Sbjct: 12 ATYNPATSILAGMSQAQLQTALSTAQQTLIALQSGQKVVSVSYAQGDGSRSVTYNQASIS 71

Query: 62 DLRAWLAKLNAQLGL-GSRRRPI 83
          +L   + +L  QLG+ G RRR +
Sbjct: 72 NLTMLIQQLQRQLGIPGVRRRAL 94


>ref|ZP_04629943.1| hypothetical protein yberc0001_14920 [Yersinia bercovieri ATCC
          43970]
 gb|EEQ05177.1| hypothetical protein yberc0001_14920 [Yersinia bercovieri ATCC
          43970]
          Length = 87

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 38/56 (67%)

Query: 26 ALQAMHDLSTGKKRVTISYSQGDGTRSVTYQQANMDDLRAWLAKLNAQLGLGSRRR 81
          A QA  +LS+G K V+ SY+QGDGTRSVTYQQ ++  L   +  L AQLG+  R R
Sbjct: 25 AQQAYIELSSGAKGVSFSYAQGDGTRSVTYQQTDIGTLMGLIQLLQAQLGIVKRPR 80