BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1306.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001858115.1| hypothetical protein Bphy_1890 [Burkholderia... 189 2e-46 ref|ZP_07677161.1| conserved hypothetical protein [Ralstonia sp.... 159 3e-37 ref|YP_003751652.1| hypothetical protein RPSI07_0994 [Ralstonia ... 153 1e-35 ref|YP_774305.1| hypothetical protein Bamb_2415 [Burkholderia am... 151 8e-35 ref|YP_001458780.1| hypothetical protein EcHS_A2095 [Escherichia... 142 2e-32 >ref|YP_001858115.1| hypothetical protein Bphy_1890 [Burkholderia phymatum STM815] gb|ACC71069.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 197 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 108/204 (52%), Positives = 136/204 (66%), Gaps = 12/204 (5%) Query: 4 LKQAGFATLHGVSRKTVTKWKERGWLVFQDDLVDVEASNALLKKYRTDVLETVTSTEQGN 63 + Q+ FA LHGVSRKTVTKWKERGWLVF D +DV+ASNA L +YR D VT + + Sbjct: 1 MNQSEFAALHGVSRKTVTKWKERGWLVFAGDAIDVKASNANLTRYRRDGAPAVTQSAKQT 60 Query: 64 KQGNKSGNNPGNKPAAPEGNKRQVLPPPELAYDESAEQAAERYIDAHGAPWNREEARRIK 123 +GNK + A +G L ESA + A R + + + +EAR +K Sbjct: 61 AKGNKRQS----VTLAAKG--------VTLEDGESASEVAGRILSGNVELLSFDEARCLK 108 Query: 124 ENYLALLNQLEYEEKSGKLVDLAVAESVLFDQARAARDAWMNWPARMGPLLAADFGLEAD 183 ENYL L+ QLEYE KSG LV+L A ++LF++ RA RDAW+NWP R+GP+LAAD G+EAD Sbjct: 109 ENYLGLMAQLEYERKSGSLVELDTATAILFEEFRAQRDAWLNWPTRVGPILAADLGVEAD 168 Query: 184 RVTEALTAYVHKHIADLGEPNADF 207 RV E LTA+VHKHIA LGEP A+F Sbjct: 169 RVVETLTAHVHKHIAQLGEPEANF 192 >ref|ZP_07677161.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|EFP64447.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 236 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 100/231 (43%), Positives = 136/231 (58%), Gaps = 24/231 (10%) Query: 1 MELLKQAGFATLHGVSRKTVTKWKERGWLVFQDDLVDVEASNALLKKY-------RTDVL 53 M + Q+ FA + GVSR+ V KWK G LV Q +LVDVEA++ ++KY R + Sbjct: 1 MTCVSQSEFARMCGVSRQAVMKWKLAGRLVLQGNLVDVEATDEHMQKYHEGGSPLRRQAV 60 Query: 54 ETV----TSTEQGNKQGNKSGNNP-----------GNKPAAPEGNKRQVLPPP--ELAYD 96 + V T + +K G K P G K G RQ + E+ Sbjct: 61 DAVDMRLTKAGEVDKGGRKLSTTPPALSADAPHAQGRKSDQSAGRLRQPVSTTGIEIKPG 120 Query: 97 ESAEQAAERYIDAHGAPWNREEARRIKENYLALLNQLEYEEKSGKLVDLAVAESVLFDQA 156 ES ++AA R + + +EARRIKE YLALLN+L++E K G L++L +A +LF++ Sbjct: 121 ESVDEAASRLVGEIDLEMSFDEARRIKEVYLALLNRLDFERKCGALIELDLASDILFEEF 180 Query: 157 RAARDAWMNWPARMGPLLAADFGLEADRVTEALTAYVHKHIADLGEPNADF 207 RA RDAW+NWP R+ PLLAA+ G+EADR+TEALT +VHK IA LGEP A+F Sbjct: 181 RAQRDAWLNWPTRVAPLLAAELGVEADRLTEALTEHVHKQIAQLGEPEANF 231 >ref|YP_003751652.1| hypothetical protein RPSI07_0994 [Ralstonia solanacearum PSI07] emb|CBJ50355.1| conserved hypothethical protein [Ralstonia solanacearum PSI07] Length = 188 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 99/213 (46%), Positives = 132/213 (61%), Gaps = 34/213 (15%) Query: 1 MELLKQAGFATLHGVSRKTVTKWKERGWLVFQDDLVDVEASNALLKKYRTDVLETVTSTE 60 M L+KQ+ FA L GVSR+ V WK G LV Q LVDV+AS A L + R Sbjct: 1 MALVKQSAFAELCGVSRQAVLNWKREGKLVMQGALVDVDASLARLGRVR----------- 49 Query: 61 QGNKQGNKSGNNPGNKPAAPEGNKRQVLPPPELAYD--ESAEQAAERY---IDAHGAPWN 115 K AP +++ L E+A + E+ + AA+R ID G + Sbjct: 50 ---------------KGGAPVKSEQPALKVMEIALELGETLDDAAQRLAGEIDVDGTSF- 93 Query: 116 REEARRIKENYLALLNQLEYEEKSGKLVDLAVAESVLFDQARAARDAWMNWPARMGPLLA 175 +EARR+KE YLALLN+LEYE+KSG LVDL +A ++LF++ RA RDAW++WPA++GPL+A Sbjct: 94 -DEARRVKEVYLALLNRLEYEQKSGTLVDLDLASAILFEEFRAQRDAWLSWPAKVGPLVA 152 Query: 176 ADFGLE-ADRVTEALTAYVHKHIADLGEPNADF 207 A+ G+E AD+VT L A+VHK I DLGEP A+F Sbjct: 153 AELGVEAADKVTAVLAAHVHKQITDLGEPEANF 185 >ref|YP_774305.1| hypothetical protein Bamb_2415 [Burkholderia ambifaria AMMD] gb|ABI87971.1| hypothetical protein Bamb_2415 [Burkholderia ambifaria AMMD] Length = 188 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 95/213 (44%), Positives = 125/213 (58%), Gaps = 29/213 (13%) Query: 1 MELLKQAGFATLHGVSRKTVTKWKERGWLVFQDDLVDVEASNALLKKYRTDVLETVTSTE 60 M +KQ+ FA L GVSR+ V WK G LV Q VDV+AS A L + R D Sbjct: 1 MAFMKQSEFADLCGVSRQAVLNWKREGKLVMQGARVDVDASLARLSRVRRD--------- 51 Query: 61 QGNKQGNKSGNNPGNKPAAPEGNKRQVLPPPELAYDESAEQAAERY---IDAHGAPWNRE 117 P + K V+ E+ ES +QAAER ID + + Sbjct: 52 --------------GSPVQLDAGKEAVVDI-EIQPGESLDQAAERLAGEIDVDSTSF--D 94 Query: 118 EARRIKENYLALLNQLEYEEKSGKLVDLAVAESVLFDQARAARDAWMNWPARMGPLLAAD 177 EARRIKE YLALL++L++E+KSG LV+L A +VLF++ RA RDAW+NWPA++GPL+A++ Sbjct: 95 EARRIKEVYLALLHRLDFEKKSGALVELDTASTVLFEEFRAQRDAWLNWPAKVGPLIASE 154 Query: 178 FGLEADRVTEALTAYVHKHIADLGEPNADFRPE 210 G+EAD++T L A+VHK IA LGEP F E Sbjct: 155 LGIEADKITSVLVAHVHKQIAQLGEPEVQFSEE 187 >ref|YP_001458780.1| hypothetical protein EcHS_A2095 [Escherichia coli HS] gb|ABV06397.1| putative membrane protein [Escherichia coli HS] Length = 187 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 27/210 (12%) Query: 1 MELLKQAGFATLHGVSRKTVTKWKERGWLVFQD-DLVDVEASNALLKKYRTDVLETVTST 59 M + Q+ +A GV RKT+ +W + G + D DL+DVEAS+A LKK Sbjct: 1 MTTMNQSQYAQHSGVDRKTIGRWIKAGRFIVMDGDLIDVEASDAALKK------------ 48 Query: 60 EQGNKQGNKSGNNPGNKPAAPEGNKRQVLPPPELAYDESAEQAAERYIDAHGAPWNREEA 119 N G P A K++ P P D+ ++ + + GA +REEA Sbjct: 49 -----------NRDGKDPRASNAKKKKA-PAPRNDGDDEIDETVRQIMLTEGAVLSREEA 96 Query: 120 RRIKENYLALLNQLEYEEKSGKLVDLAVAESVLFDQARAARDAWMNWPARMGPLLAADFG 179 RI+ENY+AL +L+YE+ SG+ ++LA+AE VLF+ R RDAW+NWP+R+ PL+AAD Sbjct: 97 ARIRENYMALQAKLQYEKDSGQTIELAIAEEVLFNAFRQQRDAWLNWPSRVAPLIAADLN 156 Query: 180 LEADRVTEALTAYVHKHIADLGEPNADFRP 209 + ADR+TE L +VHKHI+ LGEP +F P Sbjct: 157 VPADRMTEVLIEHVHKHISVLGEP--EFNP 184