BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1305.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_557963.1| hypothetical protein Bxe_A3068 [Burkholderia xe... 138 3e-31 ref|YP_371798.1| hypothetical protein Bcep18194_B1040 [Burkholde... 134 8e-30 gb|EGX01819.1| hypothetical protein ECSTECH18_5115 [Escherichia ... 117 9e-25 ref|ZP_03045873.1| conserved hypothetical protein [Escherichia c... 113 1e-23 ref|YP_003751651.1| hypothetical protein RPSI07_0993 [Ralstonia ... 112 2e-23 >ref|YP_557963.1| hypothetical protein Bxe_A3068 [Burkholderia xenovorans LB400] gb|ABE29911.1| hypothetical protein Bxe_A3068 [Burkholderia xenovorans LB400] Length = 218 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 86/164 (52%), Positives = 107/164 (65%), Gaps = 5/164 (3%) Query: 2 KAEQDNIRAVFAHPKPFTQNSLGLKVATKANPVAVIFMKDITAKYLAPYETGGLHVL--P 59 +AE+ + +F P PFT NS+G+K A K+N A +F+KDI A YLAP+E GG H L Sbjct: 33 QAEKKALPQIFDRPTPFTVNSIGVKGARKSNLEATVFVKDIAAAYLAPFEFGGPHKLIGS 92 Query: 60 SKALLNPKDIKL-DQYGQLPKSTLARLKARPDIFIGPVETKAG-VINGVWQRSMLPKT-K 116 K LNPKD L +QYG KS L RLKARPDIF+G + T+ G I GVWQR K + Sbjct: 93 GKTWLNPKDRALLNQYGNFSKSALDRLKARPDIFVGTIHTRTGEQIGGVWQRPAPTKVIQ 152 Query: 117 NKGRGGRALRGANKTGRLKLLIRFGDALPVRKQLRFGLTAKQVV 160 G+ +RGANKTG LKLLIRFGDA PV++ L FG A+ +V Sbjct: 153 TPGKRATKVRGANKTGHLKLLIRFGDAEPVKQHLDFGSRAEAIV 196 >ref|YP_371798.1| hypothetical protein Bcep18194_B1040 [Burkholderia sp. 383] gb|ABB11154.1| hypothetical protein Bcep18194_B1040 [Burkholderia sp. 383] Length = 204 Score = 134 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 14/175 (8%) Query: 3 AEQDNIRAVFAHPKPFTQNSLGLKVATKANPVAVIFMKDITAKYLAPYETGGLHVLPSKA 62 AE++N+ V +P PFT NS+ +K ATK+NPVA++++K I YL PYE GG + L S+A Sbjct: 43 AERENMSKVLDNPTPFTLNSVAIKRATKSNPVALVYVKPIAVSYLLPYEVGGKNKLNSRA 102 Query: 63 LLNPKDIKLDQYGQLPKSTLARLKARPDIFIGPVETKAGVINGVWQRSMLPKTKNKGRGG 122 L+ P K++QYG LP+S +ARLK +P++FIG V+TKAGV++GVWQR+ KT+ K G Sbjct: 103 LIKPVAQKVNQYGNLPRSAMARLKGKPNVFIGKVQTKAGVVDGVWQRT--KKTRGKAAG- 159 Query: 123 RALRGANKTGRLKLLIRFGDALPVRKQLRFGLTAKQVVDAKLAPAFAAAMSRAAA 177 LKL+++F DA VR+ L + K+VV A AM++A A Sbjct: 160 -----------LKLMMKFEDAHDVRQHLDYRGVGKRVVAAVFRRELDVAMAKAIA 203 >gb|EGX01819.1| hypothetical protein ECSTECH18_5115 [Escherichia coli STEC_H.1.8] Length = 208 Score = 117 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 79/186 (42%), Positives = 104/186 (55%), Gaps = 8/186 (4%) Query: 3 AEQDNIRAVFAHPKPFTQNSLGLKVATKANPVAVIFMKDITAKYLAPYETGGLHVLP--S 60 AE++N+R +P PFT NS+ K AT+ N +F+ D YL P+E GGLH L Sbjct: 23 AEKENLRRKLDNPTPFTVNSVRSKGATRDNLTGRVFIMDTAVPYLEPFEVGGLHYLGEGQ 82 Query: 61 KALLNPKDIKLDQYGQLPKSTLARLKARPDIFIGPVETKAG-VINGVWQRSMLPKT---- 115 KA+LNPK+I+L++YG LPK+ L +LKARPD+FIG V G + GVWQR K Sbjct: 83 KAVLNPKNIRLNKYGNLPKAKLQQLKARPDVFIGKVMNNDGEAVGGVWQRKKAKKVAKTR 142 Query: 116 KNKGRGGRALRGANKTGR-LKLLIRFGDALPVRKQLRFGLTAKQVVDAKLAPAFAAAMSR 174 K + R R K R KLLIRFGDALPV L + A + + A+ + Sbjct: 143 KRRKRSPNGTRAPRKKNRPPKLLIRFGDALPVTPVLGYQELAHDMASRLMKTELNVALEQ 202 Query: 175 AAATAR 180 A TA+ Sbjct: 203 ALKTAK 208 >ref|ZP_03045873.1| conserved hypothetical protein [Escherichia coli E22] gb|EDV82098.1| conserved hypothetical protein [Escherichia coli E22] Length = 217 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 76/171 (44%), Positives = 102/171 (59%), Gaps = 8/171 (4%) Query: 14 HPKPFTQNSLGLKVATKANPVAVIFMKDITAKYLAPYETGGLHVLPSKALLNPKDIKLDQ 73 +P PFT S+G A K + A +F++D A YL P+E GG H L ALLNPKDIKL++ Sbjct: 51 NPTPFTVKSVGSVGARKNSLRAKVFVRDTAAGYLEPFEFGGEHKLNGSALLNPKDIKLNK 110 Query: 74 YGQLPKSTLARLKARPDIFIGPVETKAGVINGVWQRSMLPKTKNKGRGGRALRGAN---- 129 YG LP++ L++LKA+P++FIG V G +N VWQR K K R R+ G Sbjct: 111 YGNLPRNKLSQLKAKPNVFIGDV----GGVNAVWQRKKPKTKKGKKRAKRSPNGTRRDKI 166 Query: 130 KTGRLKLLIRFGDALPVRKQLRFGLTAKQVVDAKLAPAFAAAMSRAAATAR 180 K KLLIRFGDALPV+ L + A + +A L A A++ A ++AR Sbjct: 167 KQPAPKLLIRFGDALPVKPTLGYMDRANTMANALLPSALHQAIAEAISSAR 217 >ref|YP_003751651.1| hypothetical protein RPSI07_0993 [Ralstonia solanacearum PSI07] emb|CBM10066.1| hypothethical protein [Ralstonia solanacearum PSI07] Length = 211 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 103/162 (63%), Gaps = 14/162 (8%) Query: 3 AEQDNIRAVFAHPKPFTQNSLGLKVATKANPVAVIFMKDITAKYLAPYETGGLHVLPSKA 62 AE++N+ V P PFT NS+ +K+A K + A++++KDI A YL PYE GG + L ++A Sbjct: 47 AEKENMTKVLDRPTPFTLNSVSIKLANKTSLTAMVYVKDIAAAYLLPYEAGGQNKLNARA 106 Query: 63 LLNPKDIKLDQYGQLPKSTLARLKARPDIFIGPVETKAGVINGVWQRSMLPKTKNKGRGG 122 L+ P K++QYG LP++T+ RL A+ ++F+G V+T AG ++GVWQRS Sbjct: 107 LIKPVGQKVNQYGNLPRTTVKRLAAKKNVFVGKVKTSAGDVDGVWQRS------------ 154 Query: 123 RALRGANKTGRLKLLIRFGDALPVRKQLRFGLTAKQVVDAKL 164 +A RG K LKLL++F DA +++L + A+++V + Sbjct: 155 KATRG--KKAGLKLLVKFQDAHEAKQRLGYQDLARKLVGSSF 194