BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1301.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08512048.1| hypothetical protein HMPREF9413_5890 [Paeniba... 75 1e-11 ref|YP_516775.1| hypothetical protein DSY0542 [Desulfitobacteriu... 72 7e-11 ref|YP_002456999.1| Immunoglobulin I-set domain-containing prote... 71 2e-10 ref|YP_003823665.1| Fibronectin type III domain protein [Clostri... 70 4e-10 gb|ADV52892.1| outer membrane adhesin like proteiin [Shewanella ... 65 8e-09 >ref|ZP_08512048.1| hypothetical protein HMPREF9413_5890 [Paenibacillus sp. HGF7] gb|EGL15242.1| hypothetical protein HMPREF9413_5890 [Paenibacillus sp. HGF7] Length = 815 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 72/161 (44%), Gaps = 13/161 (8%) Query: 84 AGSGGTVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASDNAYLGS 143 + P P APT VSA AGN T TFTAP DNGGSAIT Y+ V +S N + Sbjct: 275 SNQANATPATVPAAPTNVSAVAGNGEATVTFTAPTDNGGSAITGYE--VTASSGNVVV-- 330 Query: 144 ANGGASPLTLNGLTNGVAVYVTVAAVNAIGVGTPSATHRGVSDRKPKCPEPCTSDRGSER 203 G ASP+ + GL NG + TV A+N +G PSA V P T GS Sbjct: 331 -TGAASPIVITGLRNGTSYTFTVKAINGVGKSVPSANTNAVI--------PQTPSSGSTG 381 Query: 204 QRDHGGAATRSVWPGRRRPAVHCEQNARESSVAEVQSRRRN 244 D A + P + V N + + V +RN Sbjct: 382 SNDTPSAPSTPTTPEKTNADVDILVNGKVENAGTVTRTQRN 422 >ref|YP_516775.1| hypothetical protein DSY0542 [Desulfitobacterium hafniense Y51] dbj|BAE82331.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1642 Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 15/167 (8%) Query: 78 AIGLSYAGSGGTVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASD 137 A+ ++ +G PV PG PTG++A AGN T +FTAP+D+GGS IT Y V + Sbjct: 961 AVVIAASGQVSATPVTTPGIPTGITAVAGNGEATISFTAPSDHGGSPITGY--IVTSSPG 1018 Query: 138 NAYLGSANGGASPLTLNGLTNGVAVYVTVAAVNAIGVGTPSATHRGVSDRKPKCPEPCTS 197 N +A G + +T+ GL+NG TV AVNA G GT SA V+ ++P Sbjct: 1019 NI---AATGTGTTITVTGLSNGTTYTFTVKAVNAAGNGTDSAASNAVTPQRP-------- 1067 Query: 198 DRGSERQRDHGGAATRSVWP-GRRRPAVHCEQNARESSVAEVQSRRR 243 R S+ + G S P G + V +Q +S+VA++ RR Sbjct: 1068 -RSSDDESSGGNTTPVSSTPSGVTQITVDVKQGNTDSTVAQITVERR 1113 >ref|YP_002456999.1| Immunoglobulin I-set domain-containing protein [Desulfitobacterium hafniense DCB-2] gb|ACL18563.1| Immunoglobulin I-set domain protein [Desulfitobacterium hafniense DCB-2] Length = 1550 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 15/167 (8%) Query: 78 AIGLSYAGSGGTVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASD 137 A+ ++ +G PV PG PT ++A AGN T +FTAP+D+GGS IT Y V + Sbjct: 869 AVVIAASGQVSATPVTTPGIPTAITAVAGNGEATISFTAPSDHGGSPITGY--IVTSSPG 926 Query: 138 NAYLGSANGGASPLTLNGLTNGVAVYVTVAAVNAIGVGTPSATHRGVSDRKPKCPEPCTS 197 N +A G + +T+ GL+NG TV AVNA G GT SA V+ ++P Sbjct: 927 NI---AATGTGTTITVTGLSNGTTYTFTVKAVNAAGNGTDSAASNAVTPQRP-------- 975 Query: 198 DRGSERQRDHGGAATRSVWP-GRRRPAVHCEQNARESSVAEVQSRRR 243 R S+ + G S P G + V +Q +S+VA++ RR Sbjct: 976 -RSSDDESSGGNTTPVSSTPSGVTQITVDVKQGNTDSTVAQITVERR 1021 >ref|YP_003823665.1| Fibronectin type III domain protein [Clostridium saccharolyticum WM1] gb|ADL06042.1| Fibronectin type III domain protein [Clostridium saccharolyticum WM1] Length = 2508 Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 91/177 (51%), Gaps = 20/177 (11%) Query: 19 GPVFIAGTLGAGNVLT---ASMRSGYSATGFQWTRNGSDISGQTANTYTQLTSDRGAVIG 75 G V I GT G+ LT AS+ + T W R GS ISG ++YT SD G I Sbjct: 1787 GSVSIDGTTALGDTLTLNTASLIPSDATTSIVWLREGSIISGVDGSSYTITGSDIGKAIS 1846 Query: 76 CRAIGL-SYAG---SGGTVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMA 131 + G +Y+G + TVP V P AP ++A+AGNA +T +T P NGGS IT YQ++ Sbjct: 1847 VQVTGTGNYSGIIIAEKTVPAVVPDAPV-LTATAGNAQITLNWTVPF-NGGSTITKYQIS 1904 Query: 132 VYRASDNAYLGSANGGASPLTLNGLTNGVAVYVTVAAVNAIG-------VGTPSATH 181 ++ + N T+ GLTNG A + AVN IG VGTP+A H Sbjct: 1905 NNNGTNWTDVDLVNTH----TVTGLTNGTAYTFKLRAVNGIGNGAEASAVGTPAAPH 1957 >gb|ADV52892.1| outer membrane adhesin like proteiin [Shewanella putrefaciens 200] Length = 3937 Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 22/177 (12%) Query: 23 IAGTLGAGNVLTASMRSGYSATG------FQWTR-------NGSDISGQTANTYTQLTSD 69 ++GT GN L+ + + A G +QW R N + I G T+ +YT + D Sbjct: 1045 VSGTTTVGNALSTTNGAWTDADGDGRTYNYQWYRADDNSGTNLTAIGGATSASYTLTSGD 1104 Query: 70 RGAVIGCRAI------GLSYAGSGGTVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGS 123 G + G+ A S T+ APGAPT +A+A + V+ FTAP ++GG Sbjct: 1105 TGKYLQVTVTANDGYGGIQAASSAYTLVPGAPGAPTIGTATASDGQVSVAFTAPVNDGGE 1164 Query: 124 AITAYQMAVYRASDNAYLGSANGGASPLTLNGLTNGVAVYVTVAAVNAIGVGTPSAT 180 +I +Y++ A G G SP+ + GLTNG A TV A NA+G S T Sbjct: 1165 SIDSYEVIPNPAVAG---GPFTGAGSPIVVTGLTNGTAYTFTVTATNAVGTSVVSGT 1218 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 89 TVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASDNAYLGSANGGA 148 TV V PG PT +A+AG A T FTAPA +GGS IT Y + N +A G Sbjct: 1653 TVNPVVPGVPTIGTATAGIAQATIAFTAPAFSGGSMITGYSVTA-----NPGGATATGAG 1707 Query: 149 SPLTLNGLTNGVAVYVTVAAVNAIGVGTPSATHRGV 184 SP+TL+GLTNGV+ TV+A N +G G S+ V Sbjct: 1708 SPITLSGLTNGVSYTFTVSATNIVGTGASSSASNAV 1743 Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%) Query: 89 TVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASDNAYLGSANGGA 148 TV VV PGAPT +A+AGN + TFTAP +GG+AIT+Y + + N + +G Sbjct: 1305 TVNVVVPGAPTIGTATAGNTQASVTFTAPVSSGGAAITSYTV-----TSNPGGLTGSGAG 1359 Query: 149 SPLTLNGLTNGVAVYVTVAAVN 170 +P+T+NGLTNGVA TV A N Sbjct: 1360 APITVNGLTNGVAYTFTVTATN 1381 Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Query: 89 TVPVVAPGAPTGVSASAGNASVTGTFTAPADNGGSAITAYQMAVYRASDNAYLGSANGGA 148 TV PGAPT +A AG+ + TFTAP + GG++IT Y + ++ A++ NG A Sbjct: 1478 TVNPAVPGAPTIGTAVAGDTQASVTFTAPVNTGGTSITGYTV----TTNPAHVPPVNGAA 1533 Query: 149 SPLTLNGLTNGVAVYVTVAAVNAIGVGTPSATHRGVSDR 187 SP+ + GLTNG T+ A N G G S V+ + Sbjct: 1534 SPIVITGLTNGQGYTFTITAENVAGSGPASVASNSVTPK 1572