BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1290.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001100542.1| hypothetical protein HEAR2288 [Herminiimonas...   159   1e-37
ref|ZP_04576734.1| conserved hypothetical protein [Oxalobacter f...   118   3e-25
ref|YP_001629552.1| hypothetical protein Bpet0949 [Bordetella pe...    79   2e-13

>ref|YP_001100542.1| hypothetical protein HEAR2288 [Herminiimonas arsenicoxydans]
 emb|CAL62420.1| Hypothetical protein HEAR2288 [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/151 (56%), Positives = 106/151 (70%), Gaps = 2/151 (1%)

Query: 2   KKRSKAYKPGRLAGDTIKLKMQPWKVKAIMDPLLAIIDQLEQDGTIDVAGNGTAVFKDQG 61
           KKR+K Y+P + AG  + LK Q WKVKA+ DPL AIIDQLEQ GT+D    GT +FKD  
Sbjct: 5   KKRTKKYRP-KPAGSQL-LKTQLWKVKAVFDPLEAIIDQLEQQGTVDCTTGGTPIFKDTN 62

Query: 62  DGHWYDSAVAIGGVVEAFEIHETRIGQDLHLDGLRKLGKALEYGMPIDHHQTAAARESLQ 121
           DGHWY++ +AI GVV+A+++H+ R G DL L+ LRKL K LEY MPI    T A RE   
Sbjct: 63  DGHWYETPIAIMGVVDAYQMHQERKGIDLDLEPLRKLAKKLEYDMPIFEADTKACRECFV 122

Query: 122 HIRAASLEMTAGYARDLIKDFQIKEGLQEAA 152
            ++  +L MTA YAR +I DFQIKE LQ+AA
Sbjct: 123 RMKRETLTMTADYARQMIVDFQIKEELQKAA 153


>ref|ZP_04576734.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO27696.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 145

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/131 (43%), Positives = 86/131 (65%)

Query: 18  IKLKMQPWKVKAIMDPLLAIIDQLEQDGTIDVAGNGTAVFKDQGDGHWYDSAVAIGGVVE 77
           +KLK  PW + ++  PL +IIDQLE+DGTI VA +   +F ++ DG +Y++  A+ G +E
Sbjct: 1   MKLKTLPWVIDSVFSPLYSIIDQLEEDGTIYVANDDVPLFLNRKDGRFYETVSAVTGFIE 60

Query: 78  AFEIHETRIGQDLHLDGLRKLGKALEYGMPIDHHQTAAARESLQHIRAASLEMTAGYARD 137
            +EIHE R G++LH+D LR L   ++ G  I    T  ARE+L  IR  ++ MT  YA +
Sbjct: 61  GYEIHERRTGRNLHMDPLRHLVALIKNGEMITPSDTRHAREALDRIRTETMGMTWNYADE 120

Query: 138 LIKDFQIKEGL 148
           +++DF+IKE L
Sbjct: 121 MLRDFRIKEEL 131


>ref|YP_001629552.1| hypothetical protein Bpet0949 [Bordetella petrii DSM 12804]
 emb|CAP41281.1| conserved hypothetical protein [Bordetella petrii]
          Length = 155

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 2   KKRSKAYKPGRLAGDTIKLKMQPWKVKAIMDPLLAIIDQLEQDGTIDVAGNGTAVFKDQG 61
           K+R+K Y+P  +    +           ++ PL  IIDQLE+DGT+     G AVF+  G
Sbjct: 12  KRRNKPYRPRAVHTPMLV------ATDLVLRPLEQIIDQLERDGTVTTDAKGYAVFQ-AG 64

Query: 62  DGHWYDSAVAIGGVVEAFEIHETRIGQDLHLDGLRKLGKALEYGMPIDHHQTAAARESLQ 121
           DG WY S  AI GV+  FE+  TR G++L LDGLR+L  AL Y  P+        ++++ 
Sbjct: 65  DGQWYPSDEAIEGVIWHFEMFCTRHGRELPLDGLRELHIALHYIKPVMESTVVKLKDAMP 124

Query: 122 HIRAASLEMTAGYARDLIKDFQIKEGLQEAA 152
            +R A          DL++  +IK  ++  A
Sbjct: 125 VLRRAMAMADPDDQLDLLQQTRIKAEMEARA 155