BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1288.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001858126.1| hypothetical protein Bphy_1901 [Burkholderia...   105   2e-21
emb|CCA82250.1| conserved hypothetical protein [blood disease ba...   100   9e-20
gb|ACD38965.1| hypothetical protein PACL_0725 [Pseudomonas aerug...    98   5e-19
dbj|GAA18453.1| hypothetical protein NCGM1179_3291 [Pseudomonas ...    97   7e-19
ref|YP_969961.1| hypothetical protein Aave_1600 [Acidovorax citr...    97   1e-18

>ref|YP_001858126.1| hypothetical protein Bphy_1901 [Burkholderia phymatum STM815]
 gb|ACC71080.1| hypothetical protein Bphy_1901 [Burkholderia phymatum STM815]
          Length = 120

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 71/99 (71%), Gaps = 3/99 (3%)

Query: 1  MKFYLAGPMTGIPDLNFPRFHEEAARLRALGHEIINPA--ELNPTSNDWLECMRIDIREL 58
          MK YL+GPMTG+PDLN P FH EAARL ALG E+ NPA  +L P +  WL+ MR+DI+  
Sbjct: 1  MKLYLSGPMTGLPDLNKPAFHAEAARLEALGFEVENPALVDLGPFAT-WLDYMRVDIKLA 59

Query: 59 VMCDGVAMLAGWRKSRGATLEHDIGMRLGLHVIEAAELV 97
          V CDG+AML GW +SRGA +E ++   LGL V  A+ ++
Sbjct: 60 VDCDGIAMLPGWEQSRGAPIERNLLRDLGLPVYRASTII 98


>emb|CCA82250.1| conserved hypothetical protein [blood disease bacterium R229]
          Length = 100

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/97 (54%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 2  KFYLAGPMTGIPDLNFPRFHEEAARLRALGHEIINPAELNPTSND-WLECMRIDIRELVM 60
          + YL+GPMTG+P+LNFP FH EAARLRALG E++NPA+LNP  N  W ECMR D++ L+ 
Sbjct: 3  RIYLSGPMTGLPELNFPAFHAEAARLRALGFEVVNPADLNPEPNTGWHECMRNDLKALLD 62

Query: 61 CDGVAMLAGWRKSRGATLEHDIGMRLGLHVIEAAELV 97
          CD +A+L GW++S GA LE  +  R+G+ ++ A E++
Sbjct: 63 CDALALLDGWQQSAGAHLEMHVAHRVGMEIVIAKEVM 99


>gb|ACD38965.1| hypothetical protein PACL_0725 [Pseudomonas aeruginosa]
          Length = 178

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 1/99 (1%)

Query: 2   KFYLAGPMTGIPDLNFPRFHEEAARLRALGHEIINPA-ELNPTSNDWLECMRIDIRELVM 60
           + YLAGPMTG+PD N+P F+ E  R+RALG+ + NPA  +    + W   MR  I+ L+ 
Sbjct: 4   RVYLAGPMTGLPDFNYPAFNAEEKRIRALGYIVENPAVNMVYRGSPWETFMRDGIKRLMD 63

Query: 61  CDGVAMLAGWRKSRGATLEHDIGMRLGLHVIEAAELVEP 99
           CD +A+L GW +SRGA +E ++ + LG+HV++A  L EP
Sbjct: 64  CDILALLPGWERSRGANIERNLAITLGMHVVDAEALPEP 102


>dbj|GAA18453.1| hypothetical protein NCGM1179_3291 [Pseudomonas aeruginosa
           NCMG1179]
          Length = 107

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 2   KFYLAGPMTGIPDLNFPRFHEEAARLRALGHEIINPAELNPTSN-DWLECMRIDIRELVM 60
           + YLAGPMTG+P+ NFP FH EAARLR LG+++ NPAE       +W + +R+D+++L+ 
Sbjct: 4   RIYLAGPMTGLPEHNFPAFHAEAARLRGLGYQVENPAEHGEIPGFEWADYLRLDLQKLLT 63

Query: 61  CDGVAMLAGWRKSRGATLEHDIGMRLGLHVIEAAELVEPA 100
           C  +A+L GW  S+GA LE  +   LG+  + A  +  PA
Sbjct: 64  CQAIALLPGWMDSKGARLEFTVATNLGMRALHAEHITGPA 103


>ref|YP_969961.1| hypothetical protein Aave_1600 [Acidovorax citrulli AAC00-1]
 gb|ABM32187.1| hypothetical protein Aave_1600 [Acidovorax citrulli AAC00-1]
          Length = 113

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/91 (50%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 1  MKFYLAGPMTGIPDLNFPRFHEEAARLRALGHEIINPAELN-PTSNDWLECMRIDIRELV 59
          +  Y++GPMTG+PD N P FH+ AA LRA G+++ NPAE + PT   W+E MR D++ ++
Sbjct: 2  IHLYISGPMTGLPDFNRPAFHQAAAELRAAGYQVTNPAEKDTPTEAPWIEHMRADVKAMM 61

Query: 60 MCDGVAMLAGWRKSRGATLEHDIGMRLGLHV 90
           CDGVA+L GW  SRGA +E  +   LGL V
Sbjct: 62 DCDGVALLDGWSASRGANIEVHLAHGLGLPV 92