BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1287.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_355346.1| gp11 [Burkholderia phage Bcep176] >gi|161520401... 126 5e-27 ref|NP_888228.1| hypothetical protein BB1683 [Bordetella bronchi... 111 1e-22 ref|YP_002438944.1| hypotjetical protein [Pseudomonas aeruginosa... 103 3e-20 gb|AAS46719.1| replication protein [Aeromonas hydrophila] 100 2e-19 ref|YP_856557.1| hypothetical protein AHA_2027 [Aeromonas hydrop... 100 2e-19 >ref|YP_355346.1| gp11 [Burkholderia phage Bcep176] ref|YP_001583828.1| hypothetical protein Bmul_3853 [Burkholderia multivorans ATCC 17616] ref|YP_001949036.1| bacteriophage protein [Burkholderia multivorans ATCC 17616] gb|ABA60012.1| gp11 [Burkholderia phage Bcep176] gb|ABX17536.1| hypothetical protein Bmul_3853 [Burkholderia multivorans ATCC 17616] dbj|BAG46500.1| bacteriophage protein [Burkholderia multivorans ATCC 17616] Length = 268 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 110/221 (49%), Gaps = 23/221 (10%) Query: 19 KLVLLALCDNANDQGECYPSVQAIAAKCSMGERTVQQHVADMEGEGIIT----RLMRKGR 74 K VL+AL D AN+ YPSV+ + A +TV ++ ++ G IT R R + Sbjct: 20 KAVLMALADYANEDFITYPSVETLVAWTEQDRKTVLANLDRLKEAGWITDTGERAGRTRQ 79 Query: 75 STVY----------KIDPRKFRTPAESAPLSNPAPTPAESAPPPPQNS-------HPTPA 117 VY KI PR+ T +S P N + + P NS P Sbjct: 80 VVVYQINVDRGVEVKIGPRELLTGPKSEPSQNRNSSENGTVPNSTGNSPNFDGKQSQKPP 139 Query: 118 DLAPITVKEP--SVEPSKKRQGARGTRLPSDWVLTKSLGEWTLQEFPHWTADRLRSVGAK 175 + P +VE S+ GARGTRLP DWVLTK+LGEW L E P WT + +R V K Sbjct: 140 ETVPNLGHRTVGTVENSRNSVGARGTRLPDDWVLTKALGEWALAEQPTWTVEHVRKVAEK 199 Query: 176 FKDHWLAQPGQKGSKADWLATWRNWCRREDEMNPQGKQGGN 216 F DHW AQPGQKG K DW ATWRNW R E + GGN Sbjct: 200 FADHWRAQPGQKGRKTDWAATWRNWVRTEKPLAGAAVGGGN 240 >ref|NP_888228.1| hypothetical protein BB1683 [Bordetella bronchiseptica RB50] emb|CAE32180.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50] Length = 318 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 143/304 (47%), Gaps = 52/304 (17%) Query: 1 MSIALMTLAW--KTDLPAGRKLVLLALCDNANDQGECYPSVQAIAAKCSMGERTVQQHVA 58 MS +M+ W +T P +K VL+++ DNAND+G C+PSV I + GERTVQ + Sbjct: 1 MSTIVMSACWPIQTKTPV-QKAVLMSMADNANDEGVCWPSVAYIVMRTCAGERTVQDAIK 59 Query: 59 DMEGEGIITRLMRKGRSTVYKIDPRKFRTPAESAPLSNPAPTPAESAPP----------- 107 + G IT R GRSTVY + P KF P + P S TPA SAPP Sbjct: 60 WLIKHGAITASGRSGRSTVYTVTPAKFAPPQDLHPRS--IRTPANSAPPQDSHPTPAAAA 117 Query: 108 --PPQNSHPTPADLAPITVKEPSVEPSKKRQG-----------------ARGTRLPSDWV 148 PPQ+SHPTPA+ APITV EP EPS+ RQG A GT P D V Sbjct: 118 PPPPQDSHPTPANAAPITVIEPKEEPSRNRQGGAGAPGVPENPQAFSPKAGGTSKPLDTV 177 Query: 149 LTKSLGEWTL--QEFPHW-------------TADRLRSVGAKFKDHWLAQPGQKGSKADW 193 K L E + Q W TA +L A+ +A+ + ++ W Sbjct: 178 GVKDLVEEGVNRQHAQDWLRVRRDKKQPLTRTAWQLVQSEAEKAGVSVAEAVRVSAENSW 237 Query: 194 LATWRNWCRREDEMNP--QGKQGGNGAWFATEQGVIAKAAELGLKTIPGESAFSLKQRVQ 251 +W + E P GK + W + G++AK ELGLK GE++ + K RV Sbjct: 238 AGFRASWMEKAKEGVPAADGKAPDSLDWLRSWSGILAKGNELGLKQQQGETSPAFKARVL 297 Query: 252 EAID 255 A D Sbjct: 298 GAAD 301 >ref|YP_002438944.1| hypotjetical protein [Pseudomonas aeruginosa LESB58] emb|CAW26068.1| hypotjetical protein [Pseudomonas aeruginosa LESB58] Length = 277 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 13/152 (8%) Query: 1 MSIALMTLAWKTD-LPAGRKLVLLALCDNANDQGECYPSVQAIAAKCSMGERTVQQHVAD 59 MS +M+ W + +K VL++L D ANDQG C+P+V +IA +C + +R VQQ + Sbjct: 1 MSTIIMSACWPLQGMSPAQKAVLISLADQANDQGVCWPAVDSIATRCCLSKRAVQQAIKW 60 Query: 60 MEGEGIITRLMRKGRSTVYKIDPRKFRTPAESAPLSN-----PAPTPAESAPPPPQNSHP 114 + GI++ R+GRST+Y + P + E P S APTPA++AP PPQ HP Sbjct: 61 LRSAGIVSVEERQGRSTMYSVTPAAYAPLQEMHPSSKCTRAGNAPTPADAAPQPPQEMHP 120 Query: 115 TPADLAPITVKEPSVEPSKKRQGARGTRLPSD 146 TPA AP TV EP+ EPS G LP+D Sbjct: 121 TPAASAPRTVIEPTREPS-------GNLLPAD 145 >gb|AAS46719.1| replication protein [Aeromonas hydrophila] Length = 268 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 73/196 (37%), Positives = 95/196 (48%), Gaps = 12/196 (6%) Query: 18 RKLVLLALCDNANDQGECYPSVQAIAAKCSMGERTVQQHVADMEGEGIITRLMRKG---- 73 RKLVL+ L DNA+D GEC+PS Q IA +C + R+V H+ + G++T+ R G Sbjct: 34 RKLVLIKLADNASDTGECWPSYQHIADQCEISRRSVINHIDALCDSGLLTKESRVGPQGK 93 Query: 74 RSTVYKIDPRKFRTPAESAPLSNPAPTPAESAPPPPQNSHPTPADLAP-ITVKEPSVEPS 132 RS VY + A N + + +H L P I K P V P Sbjct: 94 RSNVYVLT-LDGAGAAHPEVQENHQGSAGAALGGGAGAAHRISHSLDPVIEPKIPPVSPQ 152 Query: 133 KKRQ-----GARGTRLPSDWVLTKSLGEWTLQEFPHWTADRLRSVGAKFKDHWLAQPGQK 187 ++ RGTRLP+DWVL G W +QE +R+ A F D+W A PG K Sbjct: 153 GDKRPDSEPPRRGTRLPNDWVLPGEWGRWAMQE-TGLPRERILLEAATFADYWQALPGAK 211 Query: 188 GSKADWLATWRNWCRR 203 K DW TWRNW RR Sbjct: 212 AVKLDWEKTWRNWIRR 227 >ref|YP_856557.1| hypothetical protein AHA_2027 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK38039.1| hypothetical protein AHA_2027 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 245 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 70/192 (36%), Positives = 92/192 (47%), Gaps = 12/192 (6%) Query: 18 RKLVLLALCDNANDQGECYPSVQAIAAKCSMGERTVQQHVADMEGEGIITRLMRKG---- 73 RKLVL+ L DNA+D GEC+PS Q IA +C + R+V H+ + G++T+ R G Sbjct: 19 RKLVLIKLADNASDTGECWPSYQHIADQCEISRRSVINHIDALCDSGLLTKESRVGPQGK 78 Query: 74 RSTVY--KIDPRKFRTPAESAPLSNPAPTPAESAPPPPQNSHPTPADLAPITVKEPSVEP 131 RS VY +D P A + P ++P K P P Sbjct: 79 RSNVYVLTLDGAGAAHPEVQEIHQGSAGAAHRISHSLDPVIEPKIPPVSPQGDKRPDSGP 138 Query: 132 SKKRQGARGTRLPSDWVLTKSLGEWTLQEFPHWTADRLRSVGAKFKDHWLAQPGQKGSKA 191 + RGTRLP+DW+L G W +QE +R+ A F D+W A PG K K Sbjct: 139 PR-----RGTRLPNDWILPGEWGRWAVQE-TGLPRERILLEAATFADYWQALPGAKAVKL 192 Query: 192 DWLATWRNWCRR 203 DW TWRNW RR Sbjct: 193 DWEKTWRNWIRR 204