BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1282.p         (70 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06842954.1| hypothetical protein BCh11DRAFT_4221 [Burkhol...    71   6e-11
ref|ZP_02494566.1| hypothetical protein BpseN_34345 [Burkholderi...    67   7e-10

>ref|ZP_06842954.1| hypothetical protein BCh11DRAFT_4221 [Burkholderia sp. Ch1-1]
 gb|EFG69408.1| hypothetical protein BCh11DRAFT_4221 [Burkholderia sp. Ch1-1]
          Length = 95

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 48/65 (73%)

Query: 4  RAAYRNEVKTRVPDHVYSALLLYMELNQLDSVSAALARIAAQHLLGSVGILPAQISGVSA 63
          RA YRNEV+ R+ D  Y ALL Y  L+ ++SVS+A+AR    HLLG VG+LPA+ISGVSA
Sbjct: 27 RAPYRNEVRARLDDPTYEALLFYQRLHGIESVSSAMARALKGHLLGMVGMLPAEISGVSA 86

Query: 64 TSSQV 68
            SQV
Sbjct: 87 HPSQV 91


>ref|ZP_02494566.1| hypothetical protein BpseN_34345 [Burkholderia pseudomallei NCTC
          13177]
          Length = 78

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 46/66 (69%)

Query: 4  RAAYRNEVKTRVPDHVYSALLLYMELNQLDSVSAALARIAAQHLLGSVGILPAQISGVSA 63
          RA YRNEVKTR+ D VY AL  Y +L+ +DS SAAL RIA   L G VG LPAQ+ GVSA
Sbjct: 8  RAEYRNEVKTRLRDRVYDALQFYKQLHGIDSDSAALNRIAEVALFGVVGTLPAQLVGVSA 67

Query: 64 TSSQVG 69
             Q+G
Sbjct: 68 EVGQIG 73