BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1281.p         (71 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002150661.1| phage protein [Proteus mirabilis HI4320] >gi...    64   5e-09
ref|YP_003221152.1| putative antirepressor [Escherichia coli O10...    62   2e-08
ref|YP_003526510.1| hypothetical protein Nhal_0950 [Nitrosococcu...    62   3e-08
gb|EGO80942.1| prophage protein [Xylella fastidiosa EB92.1]            62   4e-08
ref|NP_287263.1| hypothetical protein Z1771 [Escherichia coli O1...    61   5e-08

>ref|YP_002150661.1| phage protein [Proteus mirabilis HI4320]
 ref|ZP_03842139.1| Rac prophage; possible DNA-binding transcriptional regulator
          [Proteus mirabilis ATCC 29906]
 emb|CAR42023.1| phage protein [Proteus mirabilis HI4320]
 gb|EEI47133.1| Rac prophage; possible DNA-binding transcriptional regulator
          [Proteus mirabilis ATCC 29906]
          Length = 79

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 3  TSIEKACRLVGGQTELAEKVGVTPQAVQQWV-ARRSAPAERCLSIERATGGVVSRFDLRP 61
          T+I+KAC  VGGQ+E+A+++G++P  V QW+   R  PA RC  IE+ T GVV   +LRP
Sbjct: 8  TAIKKACNYVGGQSEMAKRLGISPPTVNQWINGTRKIPARRCPEIEKVTSGVVRCEELRP 67

Query: 62 DI 63
          D+
Sbjct: 68 DV 69


>ref|YP_003221152.1| putative antirepressor [Escherichia coli O103:H2 str. 12009]
 ref|ZP_05948735.1| putative antirepressor [Escherichia coli O157:H7 str. FRIK966]
 dbj|BAI30018.1| putative antirepressor [Escherichia coli O103:H2 str. 12009]
          Length = 114

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 4  SIEKACRLVGGQTELAEKVGVTPQAVQQWV-ARRSAPAERCLSIERATGGVVSRFDLRPD 62
          S ++AC +VGGQ+ +A  +GV+P +V QW+   R  PAERC +IERAT G V   +LRPD
Sbjct: 14 SFKRACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATKGGVLCEELRPD 73

Query: 63 I 63
          +
Sbjct: 74 V 74


>ref|YP_003526510.1| hypothetical protein Nhal_0950 [Nitrosococcus halophilus Nc4]
 gb|ADE14123.1| hypothetical protein Nhal_0950 [Nitrosococcus halophilus Nc4]
          Length = 81

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)

Query: 4  SIEKACRLVGGQTELAEKVGVTPQAVQQWVAR---RSAPAERCLSIERATGGVVSRFDLR 60
          S+++A  +VGGQ ELA+++GVT Q +  W+ R   +  PAE  L IE AT G V+R++LR
Sbjct: 10 SLQRAVEIVGGQVELAKRLGVTQQRIWNWLYRDKCQRIPAEYVLPIECATNGRVTRYELR 69

Query: 61 PDIYGHAELA 70
          PDI+G  E A
Sbjct: 70 PDIFGEREEA 79


>gb|EGO80942.1| prophage protein [Xylella fastidiosa EB92.1]
          Length = 115

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 38/62 (61%)

Query: 4   SIEKACRLVGGQTELAEKVGVTPQAVQQWVARRSAPAERCLSIERATGGVVSRFDLRPDI 63
           +I+ A +  G    LA  +GV   A+  W AR   PAERC+ IER T G VSR+ LRPDI
Sbjct: 40  AIDIAVKEFGSVNALAASLGVRQSAISNWRARGRVPAERCIVIERVTNGAVSRYQLRPDI 99

Query: 64  YG 65
           +G
Sbjct: 100 FG 101


>ref|NP_287263.1| hypothetical protein Z1771 [Escherichia coli O157:H7 str. EDL933]
 ref|NP_309534.1| hypothetical protein ECs1507 [Escherichia coli O157:H7 str.
          Sakai]
 ref|ZP_03084270.1| hypothetical protein EscherichcoliO157_21092 [Escherichia coli
          O157:H7 str. EC4024]
 ref|YP_003077349.1| hypothetical protein ECSP_1431 [Escherichia coli O157:H7 str.
          TW14359]
 ref|ZP_05941249.1| hypothetical protein EscherichiacoliO157_20599 [Escherichia coli
          O157:H7 str. FRIK2000]
 ref|ZP_07692490.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gb|AAG55875.1|AE005322_9 unknown protein encoded by prophage CP-933N [Escherichia coli
          O157:H7 str. EDL933]
 dbj|BAB34930.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gb|ACT71273.1| hypothetical protein ECSP_1431 [Escherichia coli O157:H7 str.
          TW14359]
 gb|EFO55546.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 107

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 4  SIEKACRLVGGQTELAEKVGVTPQAVQQWV-ARRSAPAERCLSIERATGGVVSRFDLRPD 62
          S ++AC +VGGQ+ +A  +GV+P +V QW+   R  PAERC +IERAT G V   +LRPD
Sbjct: 7  SFKRACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATKGGVLCEELRPD 66

Query: 63 I 63
          +
Sbjct: 67 V 67