BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1280.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002537435.1| conserved hypothetical protein [Ricinus comm... 152 4e-35 ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668] >g... 134 2e-29 ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A an... 126 4e-27 ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [A... 120 2e-25 ref|YP_972860.1| putative phage repressor [Acidovorax citrulli A... 119 5e-25 >ref|XP_002537435.1| conserved hypothetical protein [Ricinus communis] gb|EEF24949.1| conserved hypothetical protein [Ricinus communis] Length = 295 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 112/188 (59%), Gaps = 6/188 (3%) Query: 57 AQGRTPRAHRLQQIAGYFGITEKELLFGE-EIPGGAQEAAEAPLRLPDSFIQVRAHDPDD 115 + + PR LQ +A +FG+ +L + P A E + P SF+++ D Sbjct: 52 GESKDPRTKSLQPLADHFGVPLADLRERDLSAPADALEGLK-----PGSFMRITEAGQGD 106 Query: 116 QDFVTIKTVRLKLSAGISGYSIEPERGEGTPIVFQKEWLERHGYFAENLIALKIRGDSMR 175 Q F I VRL+L+AGISGY +EPE +GT W+ERHGY LI++ +RG+SM Sbjct: 107 QRFTLIPKVRLRLTAGISGYDVEPEPFDGTTAALPTGWIERHGYDRSKLISIVVRGESME 166 Query: 176 PKLDDGDLVVINTADRIPKDNHVYAVNFDGEDVIKRLCRENREWWLVSDNPDQKSYPKQI 235 L +GDLVV+NTAD+ D VYA+N++GE V+KRL R+ +WWL SDNPDQ+ Y ++ Sbjct: 167 TTLYEGDLVVVNTADQKLIDGAVYAINYEGEPVVKRLTRDAGQWWLTSDNPDQRRYYRRT 226 Query: 236 CKGAACII 243 C II Sbjct: 227 CDETTKII 234 >ref|YP_001063360.1| peptidase [Burkholderia pseudomallei 668] gb|ABN87079.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei 668] Length = 222 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 122/230 (53%), Gaps = 17/230 (7%) Query: 24 NRLQQLLQAKDGGNMSSLAAFCGVTPQAVQQWVAQGRTPRA-HRLQQIAGYFGITEKELL 82 +RL+ LQ N S LA GVT AV W+ T A L ++A ++ L Sbjct: 6 DRLRAALQEAQM-NQSELARRVGVTRGAVSFWLTSATTSLAGENLLKVASALSVSPNWLA 64 Query: 83 FGEEIPGGAQEAAEAPLRLPDSFIQVRAHDPDDQDFVTIKTVRLKLSAGISGYSIEPERG 142 G P L + +Q ++ ++ I+ V++K+SAGI+GY IEP Sbjct: 65 TGR--------GRMKPATLQEISLQ------ENPEYPAIRRVKIKISAGITGYGIEPLEE 110 Query: 143 EGTPIVFQKEWLERHGYFAENLIALKIRGDSMRPKLDDGDLVVINTADRIPKDNHVYAVN 202 + PIVF + W E +GY E L+A+K+ G SM P L DGD VV+N+AD P+D +A++ Sbjct: 111 DHAPIVFHRSWYESNGYDPEKLLAIKVAGASMEPGLYDGDWVVVNSADTSPRDGVAFALS 170 Query: 203 FDGEDVIKRLCRENREWWLVSDNPDQKSYPKQICKGAACIIIGQVIYMQS 252 FDGE VIKRL R W SDN D++ Y + G IIG+VI+ QS Sbjct: 171 FDGEVVIKRLFRTEGHWVAASDNQDKRIYRDRPLNGDT-FIIGRVIHKQS 219 >ref|ZP_02494567.1| helix-turn-helix motif:Peptidase S24, S26A and S26B [Burkholderia pseudomallei NCTC 13177] Length = 153 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 114 DDQDFVTIKTVRLKLSAGISGYSIEPERGEGTPIVFQKEWLERHGYFAENLIALKIRGDS 173 ++ ++ I+ V++K+SAGI+GY IEP + PIVF + W E +GY E L+A+K+ G S Sbjct: 13 ENPEYPAIRRVKIKISAGITGYGIEPLEEDHAPIVFHRSWYESNGYDPEKLLAIKVAGAS 72 Query: 174 MRPKLDDGDLVVINTADRIPKDNHVYAVNFDGEDVIKRLCRENREWWLVSDNPDQKSYPK 233 M P L DGD VV+N+AD P+D +A++FDGE VIKRL R + W SDN D++ Y Sbjct: 73 MEPGLYDGDWVVVNSADTSPRDGVAFALSFDGEVVIKRLFRTDGHWVAASDNQDKRIYRD 132 Query: 234 QICKGAACIIIGQVIYMQS 252 + G IIG+VI+ QS Sbjct: 133 RPLNGDT-FIIGRVIHKQS 150 >ref|YP_004236919.1| peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX48352.1| Peptidase S24/S26A/S26B, conserved region [Acidovorax avenae subsp. avenae ATCC 19860] Length = 231 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 56/133 (42%), Positives = 84/133 (63%), Gaps = 1/133 (0%) Query: 124 VRLKLSAGISGYSIEP-ERGEGTPIVFQKEWLERHGYFAENLIALKIRGDSMRPKLDDGD 182 V L L GI+ Y+I P E E PI F + WLER GY + L+A+++RG M P + GD Sbjct: 99 VSLHLRPGIADYAIWPDETDEDAPITFHRHWLERRGYMPQCLLAIRVRGCGMEPSIQAGD 158 Query: 183 LVVINTADRIPKDNHVYAVNFDGEDVIKRLCRENREWWLVSDNPDQKSYPKQICKGAACI 242 +VV+NT+D +D V+A+N GE +++R+ R+ WWL DNPDQ YP++ CI Sbjct: 159 IVVVNTSDTTLRDGQVFAINGFGEVLLRRVQRDGGRWWLSCDNPDQARYPRKAWAEPDCI 218 Query: 243 IIGQVIYMQSRAL 255 IG++++ QS ++ Sbjct: 219 PIGRLVFKQSESI 231 >ref|YP_972860.1| putative phage repressor [Acidovorax citrulli AAC00-1] gb|ABM35086.1| putative phage repressor [Acidovorax citrulli AAC00-1] Length = 231 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 1/133 (0%) Query: 124 VRLKLSAGISGYSIEP-ERGEGTPIVFQKEWLERHGYFAENLIALKIRGDSMRPKLDDGD 182 V L L GI+ Y+I P E E PI F ++WLER GY + L+A+++RG M P + GD Sbjct: 99 VSLHLRPGIADYAIWPDETDEDAPITFHRQWLERRGYIPQCLLAIRVRGCGMEPSIQAGD 158 Query: 183 LVVINTADRIPKDNHVYAVNFDGEDVIKRLCRENREWWLVSDNPDQKSYPKQICKGAACI 242 +VV+NT+D +D V+A+N GE +++R R++ WW+ DNPDQ YP++ CI Sbjct: 159 IVVVNTSDTTLRDGQVFAINGFGEVLLRRAQRDDGRWWISCDNPDQARYPRKAWAEPDCI 218 Query: 243 IIGQVIYMQSRAL 255 IG++++ QS + Sbjct: 219 PIGRLVFKQSECI 231