BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1279.p         (165 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAK10836.1| hypothetical protein PAJ_0756 [Pantoea ananatis ...    86   2e-15

>dbj|BAK10836.1| hypothetical protein PAJ_0756 [Pantoea ananatis AJ13355]
          Length = 163

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 1   MVYFTRLRVGFPDPPRPLEDKPNSWK---IYVTCQSTDFRYTDAIADVNVLSESDQLSAR 57
           M Y+ R  + F     P  +   S K   I   C + +    D +  +N L   D  +A 
Sbjct: 1   MTYYLR-EINFEAIGSPEREPAKSEKHKTIVARCLTENLDDCDILQQINDLELGDAKAAL 59

Query: 58  GALVTMIAKGSTGMPIQELYDEKVCHPAHEFTYESASGKHSVIQILRIRGSDIRIYFIYL 117
            ALV +I   ++G+P    YDEK CH  H FTY      H + ++ R+R  D+RI F + 
Sbjct: 60  TALVKLIQVAASGLPFTNFYDEKQCHETHSFTY-----NHKIYKVWRLRQRDVRITFFHC 114

Query: 118 PGRIILILKVEEKRKDKLSKGQKQVLETLATAALDAIEQ 156
            G+ +L+  V  K KDKL+  QK +LE      +DA  Q
Sbjct: 115 EGKTVLLTHVFVKHKDKLTNKQKAMLEEQVKTYIDASTQ 153