BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1274.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777706.1| DNA recombination-dependent growth factor C ... 440 e-121 sp|A4G416|RDGC_HERAR RecName: Full=Recombination-associated prot... 379 e-103 ref|YP_001352866.1| recombination associated protein [Janthinoba... 377 e-102 ref|YP_004754937.1| DNA recombination-dependent growth factor C ... 373 e-101 ref|YP_001630660.1| recombination associated protein [Bordetella... 337 1e-90 >ref|YP_003777706.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] gb|ADJ65798.1| DNA recombination-dependent growth factor C protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 221/302 (73%), Positives = 259/302 (85%), Gaps = 1/302 (0%) Query: 2 FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNGLVHQVNRQF 61 F+N QIYRLP W I+A++L HLAPQ FT ++DMQSQGW+ PR + LVH VNRQ Sbjct: 3 FKNLQIYRLPAPWAISADELESHLAPQAFTACSSLDMQSQGWVPPRNNEK-LVHVVNRQL 61 Query: 62 LLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRLS 121 L++L TEKK+LPS+VINQ+T+ RA ELEEQQGFPPGRKQTKELKEQVTDELLPRAF+ + Sbjct: 62 LMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVVR 121 Query: 122 SMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASDE 181 S WVWIDPVNGWL+ DA SP+KAEE LKLLFKA+P+FPLET+RTVMSP AAMTDWLASDE Sbjct: 122 STWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASDE 181 Query: 182 APDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFTL 241 AP+GFTVDQDTELRSTAES+ATVRYVRHTLEA+ +R+HIE GKQCTRLALTWADK+SF L Sbjct: 182 APNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTWADKVSFVL 241 Query: 242 AENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGELPPAE 301 ENLS+K+IA LDVLKE+ ++ GKNDDERFDGDF+L E +L++ALV ALGG+L + Sbjct: 242 TENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLREND 301 Query: 302 GA 303 GA Sbjct: 302 GA 303 >sp|A4G416|RDGC_HERAR RecName: Full=Recombination-associated protein rdgC emb|CAL61253.2| Recombination-associated protein RdgC [Herminiimonas arsenicoxydans] Length = 300 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 190/295 (64%), Positives = 232/295 (78%), Gaps = 1/295 (0%) Query: 2 FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNGLVHQVNRQF 61 F+N QIYRLP W ITAEQL LAP F P ++DMQSQGW+ PRE+ LV+ +N+Q Sbjct: 3 FKNLQIYRLPAPWAITAEQLETDLAPHAFLPCSSLDMQSQGWVSPRENG-ALVYTLNKQI 61 Query: 62 LLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRLS 121 +L L TEKK+LP++VINQ+T+ +A E+EEQQGF PGRKQ KELKE VTDELLPRAF+ Sbjct: 62 MLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKELKEDVTDELLPRAFSIWR 121 Query: 122 SMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASDE 181 WVWIDPVNGWLV DA SPAKA+E +KLL K+V + PL+T+ V SP AAMT WL +DE Sbjct: 122 QTWVWIDPVNGWLVVDAGSPAKADEVIKLLIKSVDKLPLDTLHVVQSPVAAMTQWLLTDE 181 Query: 182 APDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFTL 241 AP GFTVDQDTELRST E +ATVRYVRHTLEA+ +++HI GKQCTRLA++WADKISF L Sbjct: 182 APSGFTVDQDTELRSTGEGKATVRYVRHTLEAEDVQRHIAAGKQCTRLAMSWADKISFVL 241 Query: 242 AENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGE 296 E+L+IK++A LDV+KEN D T +NDDERFD D +L E ++++ LV ALGGE Sbjct: 242 TESLAIKRVAPLDVIKENTDTTAQNDDERFDSDVMLMTGELSRMLADLVQALGGE 296 >ref|YP_001352866.1| recombination associated protein [Janthinobacterium sp. Marseille] sp|A6SX69|RDGC_JANMA RecName: Full=Recombination-associated protein rdgC gb|ABR88430.1| recombination associated protein [Janthinobacterium sp. Marseille] Length = 300 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 185/296 (62%), Positives = 234/296 (79%), Gaps = 1/296 (0%) Query: 2 FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNGLVHQVNRQF 61 F+N QIYRLP W ++AEQLA LAP F P +++MQSQGW+ PRE+ LV+ +N+Q Sbjct: 3 FKNLQIYRLPAPWAVSAEQLAADLAPHAFQPCSSLEMQSQGWVSPRENGE-LVYSLNKQM 61 Query: 62 LLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRLS 121 LL L TEKK+LP++VINQ+T+ +A E+EEQQGF PGRKQ KE+KE+VTD+LLPRAF+ Sbjct: 62 LLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKEIKEEVTDDLLPRAFSVWR 121 Query: 122 SMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASDE 181 WVWIDPVNGW+V DA SPAKA+E +KLL K+V + PLET+ SP AMT+WL +D Sbjct: 122 QTWVWIDPVNGWMVVDAGSPAKADEVIKLLVKSVDKLPLETLHVAQSPVTAMTEWLVADT 181 Query: 182 APDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFTL 241 AP GFTVDQDTELR+T E +ATVRYVRHTLEAD +R+HI +GKQCTRLA+TWADKISF L Sbjct: 182 APHGFTVDQDTELRATGEGKATVRYVRHTLEADDVRRHIASGKQCTRLAMTWADKISFVL 241 Query: 242 AENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGEL 297 E+L+IK++ LDV+KEN D T +ND+ERFD D +L E ++++ LVAALGGE+ Sbjct: 242 TESLTIKRVTPLDVIKENADSTAQNDEERFDSDIMLMTGELSRMLADLVAALGGEV 297 >ref|YP_004754937.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] gb|AEK64114.1| DNA recombination-dependent growth factor C [Collimonas fungivorans Ter331] Length = 299 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 186/296 (62%), Positives = 232/296 (78%), Gaps = 3/296 (1%) Query: 2 FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNG-LVHQVNRQ 60 F+N QIYR+P W I+AEQL LAPQ F ++++QSQGW+ PR+ NG LVH VNRQ Sbjct: 3 FKNLQIYRIPAPWAISAEQLEAFLAPQAFAKCSSLELQSQGWLSPRD--NGMLVHSVNRQ 60 Query: 61 FLLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRL 120 ++ L TEKK+LP++VINQ+T+ RA E+EEQQG+ PGRKQ K+LKEQVTDELLPRAF+ Sbjct: 61 MMILLGTEKKLLPATVINQVTKARAAEIEEQQGYAPGRKQLKDLKEQVTDELLPRAFSIQ 120 Query: 121 SSMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASD 180 + WVWIDPVNGWLV DA+SP KAEE LKLL +V + + ++RT SP +MT+WLASD Sbjct: 121 RNTWVWIDPVNGWLVIDAASPTKAEEILKLLLASVDKLQISSLRTAHSPLTSMTNWLASD 180 Query: 181 EAPDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFT 240 EAP GFTVDQDTELR+ E +ATVRYVRHT+EAD +R+HI +GKQCTRLA+TWAD +SF Sbjct: 181 EAPHGFTVDQDTELRAAGEGKATVRYVRHTIEADDVRRHIASGKQCTRLAMTWADHVSFV 240 Query: 241 LAENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGE 296 L E+L+IK+IA LDVLKE +D + KNDDERFD D +L E +++ LV ALGGE Sbjct: 241 LTESLAIKRIAPLDVLKEGNDTSSKNDDERFDSDMMLMTGELSKMLGDLVFALGGE 296 >ref|YP_001630660.1| recombination associated protein [Bordetella petrii DSM 12804] emb|CAP42391.1| recombination associated protein RdgC [Bordetella petrii] Length = 321 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 164/295 (55%), Positives = 221/295 (74%), Gaps = 1/295 (0%) Query: 2 FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNGLVHQVNRQF 61 F+N +IYRL W +T EQL + LA + N++MQS GW+ PRE++ L H VN+Q Sbjct: 25 FKNLKIYRLSAPWTLTGEQLEESLARHAYQAGNNLEMQSLGWVSPRENA-ALSHTVNQQI 83 Query: 62 LLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRLS 121 LL L+ EKK+LP++V+NQ+ R RA+E+EEQQG+ PGRKQ KE+KE+VTDELLP+AF+ Sbjct: 84 LLSLRAEKKLLPATVVNQVARARAQEIEEQQGYKPGRKQMKEIKERVTDELLPKAFSIYR 143 Query: 122 SMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASDE 181 VWIDPVN WLV DA++ AKA+E + LL K + PLE + SP AAMT WLA+DE Sbjct: 144 DTRVWIDPVNHWLVIDAAASAKADEVIGLLVKTIDPLPLENLYVAQSPAAAMTGWLAADE 203 Query: 182 APDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFTL 241 AP F++DQDTELR++ ESRA +RYV+H+++AD +R+HI++GKQCTRLA+TWAD++SF L Sbjct: 204 APANFSIDQDTELRASGESRAAIRYVKHSIDADDVRRHIQSGKQCTRLAMTWADRVSFVL 263 Query: 242 AENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGE 296 E+L +K++A LDVLKE +D +NDDE+FD D L E +L++ L AALGGE Sbjct: 264 TESLDVKRVAPLDVLKEGNDTVMQNDDEKFDSDMALMTGELAKLLADLTAALGGE 318