BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1271.p         (410 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001580039.1| hypothetical protein Bmul_1855 [Burkholderia...   107   5e-21
ref|ZP_03586950.1| conserved hypothetical protein [Burkholderia ...   106   6e-21
ref|ZP_03569239.1| conserved hypothetical protein [Burkholderia ...   104   2e-20
ref|YP_001633010.1| hypothetical protein Bpet4392 [Bordetella pe...    97   5e-18
ref|ZP_02359406.1| hypothetical protein BoklE_28289 [Burkholderi...    95   2e-17

>ref|YP_001580039.1| hypothetical protein Bmul_1855 [Burkholderia multivorans ATCC
           17616]
 ref|YP_001945859.1| putative bacteriophage protein [Burkholderia multivorans ATCC
           17616]
 gb|ABX15542.1| hypothetical protein Bmul_1855 [Burkholderia multivorans ATCC
           17616]
 dbj|BAG43323.1| putative bacteriophage protein [Burkholderia multivorans ATCC
           17616]
          Length = 435

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 54/70 (77%)

Query: 86  HPDDVAVDQFAEAMKAKLTDARAKGRSGWQDCDPAELSYMLREHVEKGDPRDVANFCMFL 145
           H DDVAVD FA AMK KL  ARAKGR GW+ C PA+LS MLREHVEKGDPRDVANFCM L
Sbjct: 135 HSDDVAVDSFATAMKHKLALARAKGRGGWETCSPADLSRMLREHVEKGDPRDVANFCMML 194

Query: 146 WSLGKPIGDA 155
           W  G PI  A
Sbjct: 195 WHHGSPIASA 204


>ref|ZP_03586950.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gb|EED98627.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 340

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/96 (61%), Positives = 64/96 (66%), Gaps = 11/96 (11%)

Query: 81  DANVKHPDDVAVDQFAEAMKAKLTDARAKGRSGWQDCDPAELSYMLREHVEKGDPRDVAN 140
           +A   H DDVAVD FA AMK KL  ARAKGR GW+ C PA+LS MLREHVEKGDPRDVAN
Sbjct: 170 EAREPHSDDVAVDSFAAAMKHKLALARAKGRGGWEACSPADLSRMLREHVEKGDPRDVAN 229

Query: 141 FCMFLWSLGKPI-------GDAR----PVVNLQLTP 165
           FCM LW  G PI       G+AR    P +   LTP
Sbjct: 230 FCMMLWHHGSPIVSAPADSGEARLTDEPSLTNPLTP 265


>ref|ZP_03569239.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 ref|ZP_03575885.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE09228.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE15146.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 387

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 54/70 (77%)

Query: 86  HPDDVAVDQFAEAMKAKLTDARAKGRSGWQDCDPAELSYMLREHVEKGDPRDVANFCMFL 145
           H DDVAVD FA AMK KL  ARAKGR GW+ C PA+LS MLREHVEKGDPRDVANFCM L
Sbjct: 222 HSDDVAVDSFAAAMKHKLALARAKGRGGWEACSPADLSRMLREHVEKGDPRDVANFCMML 281

Query: 146 WSLGKPIGDA 155
           W  G PI  A
Sbjct: 282 WHHGSPIVSA 291


>ref|YP_001633010.1| hypothetical protein Bpet4392 [Bordetella petrii DSM 12804]
 emb|CAP44743.1| conserved unknown protein [Bordetella petrii]
          Length = 151

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 52/69 (75%)

Query: 84  VKHPDDVAVDQFAEAMKAKLTDARAKGRSGWQDCDPAELSYMLREHVEKGDPRDVANFCM 143
           + H DDVAVD FA AMK KL  AR +GR GW+  DPA LS MLR HVEKGDP DVANFC 
Sbjct: 74  LAHTDDVAVDVFAAAMKQKLAAARIQGRGGWEQRDPAVLSQMLRAHVEKGDPCDVANFCC 133

Query: 144 FLWSLGKPI 152
           FLW LG+PI
Sbjct: 134 FLWVLGEPI 142


>ref|ZP_02359406.1| hypothetical protein BoklE_28289 [Burkholderia oklahomensis EO147]
          Length = 418

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 47/64 (73%)

Query: 86  HPDDVAVDQFAEAMKAKLTDARAKGRSGWQDCDPAELSYMLREHVEKGDPRDVANFCMFL 145
           H DD+AVD FA  MK KL  ARAKGR GW+ CD  ELS  L EH+EKGDPRDVANFCM L
Sbjct: 141 HSDDIAVDTFARVMKDKLAQARAKGRGGWEMCDRRELSRTLHEHIEKGDPRDVANFCMML 200

Query: 146 WSLG 149
           W  G
Sbjct: 201 WHHG 204