BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1269.p         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_841530.1| hypothetical protein H16_B2018 [Ralstonia eutro...    68   5e-10
ref|YP_004682157.1| hypothetical protein CNE_2c19720 [Cupriavidu...    67   7e-10

>ref|YP_841530.1| hypothetical protein H16_B2018 [Ralstonia eutropha H16]
 emb|CAJ96800.1| Hypothetical protein H16_B2018 [Ralstonia eutropha H16]
          Length = 79

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 1  MGRTTFFEEGDYFLFCTATPLKNGKWEGSVLLERKSDHTGEMVPGMRHIIRHAHFELESD 60
          M    + EEG+Y+  CT    K+G WE SVL ER+ DH  E VPG+RH I+ A F  E +
Sbjct: 1  MSSHVWVEEGEYYCHCTVWKSKSGTWEASVLFERRIDHANEFVPGLRHKIK-ASFNSEGE 59

Query: 61 AITQAHLLAIGLIKHGRVGL 80
          A+T+A   A   +++ + GL
Sbjct: 60 AMTEAIAYAKACVENTKTGL 79


>ref|YP_004682157.1| hypothetical protein CNE_2c19720 [Cupriavidus necator N-1]
 gb|AEI80925.1| hypothetical protein CNE_2c19720 [Cupriavidus necator N-1]
          Length = 79

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 1  MGRTTFFEEGDYFLFCTATPLKNGKWEGSVLLERKSDHTGEMVPGMRHIIRHAHFELESD 60
          M    + EEG+Y+  CT    K+G W+ SVL ER+ DH  E VPG+RH I+ A F  E +
Sbjct: 1  MSSHAWVEEGEYYCHCTVWKSKSGTWDASVLFERRIDHANEFVPGLRHKIK-ASFNSEDE 59

Query: 61 AITQAHLLAIGLIKHGRVGL 80
          A+T+A   A   +++ + GL
Sbjct: 60 AMTEAIAYAKACVENTKTGL 79