BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1266.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002911892.1| integrase/recombinase protein [Burkholderia ... 142 7e-32 ref|YP_004685170.1| protein Gp33 [Cupriavidus necator N-1] >gi|3... 124 4e-26 emb|CCD28857.1| Phage integrase family protein [Candidatus Glome... 124 4e-26 ref|YP_001565722.1| integrase family protein [Delftia acidovoran... 123 7e-26 emb|CAQ36232.1| integrase/recombinase protein [Ralstonia solanac... 113 4e-23 >ref|YP_002911892.1| integrase/recombinase protein [Burkholderia glumae BGR1] gb|ACR29188.1| integrase/recombinase protein [Burkholderia glumae BGR1] Length = 378 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 118/389 (30%), Positives = 182/389 (46%), Gaps = 28/389 (7%) Query: 3 RSRKTGKGLPRRVYIRDNSYWFVPAEPIVDPKSKQVRKWIKLARVSDGEAAMHLALAG-- 60 R RK+ GLP RVYIRD S+++V P S KWI+L RVS+G+A M LA Sbjct: 4 RRRKSPDGLPSRVYIRDGSFYWV------RPDSN---KWIRLCRVSEGDALMLERLAAEK 54 Query: 61 -LLTHAVDNESMAYACAEFKKHKLKRYSDETQATYGRYLDTMAEAFADFSARQVTTKSWS 119 T A ++ EF RY+ + + R + + E+ +++ +V + Sbjct: 55 RQFTAAAGGGNLPRLVGEFMDTHKMRYAPSFRDEWVRRGEAVIESLCEWNVERVDAGAVE 114 Query: 120 QFLRQNFSDRPNTAQKYTALARKLFKYIISELGLREDNPIDQIELDDYETERRLILPTHE 179 FL +N++DR + A F +II L + NP ++ + + R + +P + Sbjct: 115 DFLMKNWADRLPMQRAMKAWLSTFFNWIIRRKKLMQVNPCREVIVKKPKA-RDVYIPDRD 173 Query: 180 QVQAIRQAGMMSKVRSDTG----KAL--PTASGPMFACLVDAAYLLWARAVDVRTLKESQ 233 V AIR A M + G K L +GPM C +D YL R+ D+R L+ Q Sbjct: 174 FV-AIRDALMTYTYTKNAGTPKEKTLVGKVQTGPMMQCFIDLCYLTCQRSTDIRLLRWDQ 232 Query: 234 IDGETGGYIRLKPSKTAKTSGKSVDILITPAIWDVIQRARAIKKEYKVHGKPLITGYLFP 293 ID + G I P+KT +SG++VD +TP I V+ RA+ + + Y+ Sbjct: 233 IDRD-AGVIHFVPTKTEDSSGEAVDWPLTPDIEAVLARAKLLDPAFG-------QTYVIR 284 Query: 294 TRKGTAYGKSGLFSMWDRARDRLGIGKESPAEERIQFRDLRALGATDAAKAGKKMDEIQA 353 RKG WD A DR+ S A + +D+RA TDA +AG +++++ Sbjct: 285 DRKGKPKTDQSCRDAWDGAIDRVAKLDPSIAGKPYTIKDIRAKALTDAKRAGYAIEDLRV 344 Query: 354 RLTHTSSKTSEIYIKEAIAQVSDMNLPLP 382 HT + T+E Y+K S + L LP Sbjct: 345 AGAHTDTATTETYLKAREVPRSKVVLHLP 373 >ref|YP_004685170.1| protein Gp33 [Cupriavidus necator N-1] gb|AEI76689.1| protein Gp33 [Cupriavidus necator N-1] Length = 372 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 122/397 (30%), Positives = 181/397 (45%), Gaps = 41/397 (10%) Query: 1 MNRSRKTG-KGLPRRVYIRDNSYWFVPAEPIVDPKSKQVRKWIKLARVSDGEAAMHLALA 59 MN R+T GLP RVYIR SY++V KWIKL RV +GE M LA Sbjct: 1 MNARRRTKPDGLPSRVYIRYGSYFWV---------RNTDEKWIKLCRVDEGETRMFERLA 51 Query: 60 GLLTHAV---DNESMAYACAEFKKHKLKRYSDETQATYGRYLDTMAEAFADFSARQVTTK 116 D SM+ A + + K Y++ + + R + + +AF ++ Sbjct: 52 EEKRKTDVDGDEGSMSRLVAIYMEQHAKHYAESFRDEWCRRGEDVRKAFKRHGIEEIDPG 111 Query: 117 SWSQFLRQNFSDRPNTAQKYTALARKLFKYIISELGLRED---NPIDQIELDDYETERRL 173 + FL N+ D+ T K F + + LR NP ++ L + R++ Sbjct: 112 AVQDFLLGNWPDKLPTQTAMKGWLSKFFAWAV----LRRHITINPCREVALKKPKM-RKV 166 Query: 174 ILPTHEQVQAIRQA--------GMMSKVRSDTGKALPTASGPMFACLVDAAYLLWARAVD 225 +P H AIR A + +V+ T K +PT GP VD YL R+ D Sbjct: 167 YIP-HGHFLAIRAALAAYKYKKAVRGEVQEVTAK-VPT--GPEMQVFVDLCYLTCQRSTD 222 Query: 226 VRTLKESQIDGETGGYIRLKPSKTAKTSGKSVDILITPAIWDVIQRARAIKKEYKVHGKP 285 +R L+ SQ+D G I PSKTA +SG++VD ITP I +V++RA+ +++ KV Sbjct: 223 IRELRWSQVD-RHAGVIHFVPSKTADSSGEAVDWPITPEIDEVLRRAKELRRSIKVQA-- 279 Query: 286 LITGYLFPTRKGTAYGKSGLFSMWDRARDRLGIGKESPAEERIQFRDLRALGATDAAKAG 345 L ++ R G + W RD L K + + +D+RA TDA KAG Sbjct: 280 LADDFVLVDRSGKPKTAAACRDAW---RDALVRAKLEGKDYTV--KDIRAKALTDAKKAG 334 Query: 346 KKMDEIQARLTHTSSKTSEIYIKEAIAQVSDMNLPLP 382 ++ +Q HT T+E YIK+ VS + L +P Sbjct: 335 YDIEALQVAGAHTDRATTEGYIKQRDVPVSTVRLSIP 371 >emb|CCD28857.1| Phage integrase family protein [Candidatus Glomeribacter gigasporarum BEG34] Length = 375 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 170/388 (43%), Gaps = 49/388 (12%) Query: 1 MNRSRKTGKGLPRRVYIRDNSYWFVPAEPIVDPKSKQVRKWIKLARVSDGEA-------A 53 MNR RK GK LPRR+ SY+ ++ P + K I+L RV E A Sbjct: 1 MNRPRKNGKHLPRRMIESHGSYF------LLKPIGFRRNKAIRLGRVRGVEGKTEDELYA 54 Query: 54 MHLALAGLLTHAVDNE--SMAYACAEFKKHKLKRYSDETQATYGRYLDTMAEAFADFSAR 111 L L VD +M +K L +Y+ +T+ Y R D ++AFA+F Sbjct: 55 QALKRYADLIAEVDAPVGTMVKLLERWKNEALSKYALKTRKEYIRMTDIASKAFAEFDIE 114 Query: 112 QVTTKSWSQFLRQNFSDRPNTAQKYTALARKLFKYIISELGLREDNPIDQIELDDYETER 171 V + F+ NF D+PN A KY AL +F + + + GLR+DNP I + Sbjct: 115 HVRPMHIAAFVDDNFIDKPNAANKYKALLSLVFSFAVRK-GLRDDNPCRDIHGVPEPKRQ 173 Query: 172 RLILPTHEQVQAIRQAGMMSKVRSDTGKALPTASGPMFACLVDAAYLLWARAVDVRTLKE 231 R I T E++ +R A + PT SG M CL+D A + R D+ LK Sbjct: 174 RYI--TDEELARVRAAALWGN------DDKPTPSGRMIVCLIDLAVVTGQRIGDLLALKW 225 Query: 232 SQIDGETGGYIRLKPSKTAKTSGKSVDILITPAIWDVIQRARAIKKEYKVHGKPLITGYL 291 S + E + KP KTAK++G V + +T + ++++RAR V G +I Sbjct: 226 SDVSEEG---VLFKPRKTAKSTGVIVPVKMTSQLQNILERARHFG---NVKGITVIH--- 276 Query: 292 FPTRKGTAYGKSGLFSMWDRARDRLGIGKESPAEER-----------IQFRDLRALGATD 340 T KG Y G + W RA R E ++R + F DLR TD Sbjct: 277 --TIKGHPYTYFGAQTAWKRAVARACTRYEEECKKRDMTLDTAFLRNMHFHDLRRKSLTD 334 Query: 341 AAKAGKKMDEIQARLTHTSSKTSEIYIK 368 A + GK ++ HT K + Y++ Sbjct: 335 AKRQGKDPQKLAG---HTDPKMTARYLE 359 >ref|YP_001565722.1| integrase family protein [Delftia acidovorans SPH-1] gb|ABX37337.1| integrase family protein [Delftia acidovorans SPH-1] Length = 342 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 111/364 (30%), Positives = 177/364 (48%), Gaps = 38/364 (10%) Query: 11 LPRRVYIRDNSYWFVPAEPIVDPKSKQVRKWIKLARVSDGEAAMHLALAGLLTHAVDNES 70 LP+RVY + +YW V AE + R W +L+ + DG A++ ALA + +S Sbjct: 8 LPKRVYEKGGAYWHVRAE-------GKKRIWARLSTIRDGLPALYRALAAMEQADQTRDS 60 Query: 71 MAYACAEFKKHKLKRYSDETQATYGRYLDTMAEAFADFSARQVTTKSWSQFLRQNFSDRP 130 MA A++ R+S +TQA T++E+F +F A++VT + +FL+ +FSD+P Sbjct: 61 MAALIADWLAEVGSRHSVKTQANDAYQTRTISESFQEFRAQEVTAPAIVEFLK-HFSDKP 119 Query: 131 NTAQKYTALARKLFKYIISELGLRE--DNPIDQIELDDYETERRLILPTHEQVQAIRQAG 188 T Y ++ R+L ++ E G R NP+D ++ + R I T +V+ I+ A Sbjct: 120 RTYNAYRSMLRELMRF-AEEKGYRPPGTNPVDSLKTMSVKARTRYI--TDSEVRRIKVAV 176 Query: 189 MMSKVRSDTGKALPTASGPMFACLVDAAYLLWARAVDVRTLKESQIDGETGGYIRLKPSK 248 M D GK T SG L+D AYL R D+ TL+ S + G+ G I +P+K Sbjct: 177 MY----GDDGKR--TRSGHTICALIDMAYLTGQRIGDLLTLRWSDV-GKQG--ITFQPAK 227 Query: 249 TAKTSGKSVDILITPAIWDVIQRARAIKKEYKVHGKPLITGYLFPTRKGTAYGKSGLFSM 308 T ++G V I T + +V+ R RA+ + ++F T +G Y SG + Sbjct: 228 TEGSTGAQVLIAWTQRLRNVVDRLRALPNQSP--------DFVFCTLQGQPYTYSGASTA 279 Query: 309 WDRARDRLGIGKESPAEERIQFRDLRALGATDAAKAGKKMDEIQARLTHTSSKTSEIYIK 368 W RA R G+ + F DLR TD + G+ + E Q H++ + Y++ Sbjct: 280 WKRAVKRAGV-------KDCHFHDLRGKALTDVDR-GRGIMEAQRMGAHSTQSQTADYVR 331 Query: 369 EAIA 372 A Sbjct: 332 HKRA 335 >emb|CAQ36232.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 310 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 23/313 (7%) Query: 70 SMAYACAEFKKHKLKRYSDETQATYGRYLDTMAEAFADFSARQVTTKSWSQFLRQNFSDR 129 +M+ A + K Y++ + + R +T+ AF +F QV + FL +N+ D+ Sbjct: 20 TMSRLVAIYMAKHAKDYAESYRDEWKRRGETIRTAFRNFEIEQVDAAACEDFLTENWHDK 79 Query: 130 PNTAQKYTALARKLFKYIISELGLREDNPIDQIELDDYETERRLILPTHEQVQAIRQAGM 189 P T + A F + + L + NP+ ++++ + RR + T AIR A Sbjct: 80 PTTQKAMKAWLSGFFSWAVRRKHL-QVNPVREVKIK--KPPRRTVYITSAHFVAIRDALA 136 Query: 190 MSKVRSDTGKALPTASGPMFACLVDAAYLLWARAVDVRTLKESQIDGETGGYIRLKPSKT 249 M+ GK PT GPM VD YL R+ ++R L+ + ID + IR P+KT Sbjct: 137 MAA----DGKKTPT--GPMMQVFVDLCYLTCQRSTEIRNLRWADIDW-SARLIRFVPTKT 189 Query: 250 AKTSGKSVDILITPAIWDVIQRARAIKKEYKVHGKPLITGYLFPTRKGTAYGKSGLFSMW 309 +SG++VD ITP I V+ RA+ ++ P+ Y+ + G + W Sbjct: 190 EDSSGEAVDWPITPEIEAVLHRAKKLE--------PIGGDYVVRDKHGKPKTTAACRDAW 241 Query: 310 DRARDRLGIGKESPAEERIQFRDLRALGATDAAKAGKKMDEIQARLTHTSSKTSEIYIKE 369 + A+ R G+ + + +D+RA TDA KAG ++ +Q H+ T+E YIK+ Sbjct: 242 NDAKMRAGL-----RDTKYTVKDIRAQALTDAKKAGYDIEALQVAGAHSDRATTEGYIKQ 296 Query: 370 AIAQVSDMNLPLP 382 VS ++L LP Sbjct: 297 REVPVSTVHLTLP 309