BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1264.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003048649.1| hypothetical protein Mmol_1216 [Methylotener... 140 4e-31 ref|YP_003674611.1| hypothetical protein M301_1654 [Methylotener... 137 3e-30 ref|YP_412985.1| hypothetical protein Nmul_A2302 [Nitrosospira m... 129 8e-28 ref|YP_004295632.1| hypothetical protein NAL212_2679 [Nitrosomon... 127 2e-27 ref|YP_004696360.1| hypothetical protein Nit79A3_3227 [Nitrosomo... 126 5e-27 >ref|YP_003048649.1| hypothetical protein Mmol_1216 [Methylotenera mobilis JLW8] gb|ACT48122.1| conserved hypothetical protein [Methylotenera mobilis JLW8] Length = 314 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 103/292 (35%), Positives = 149/292 (51%), Gaps = 52/292 (17%) Query: 50 RRTALGIVSSVLVHAAVFLFVRAKLNEAPPRLDSPGRPDAPLQVSLIRPPAPAPVAQPEP 109 R T L I+ S+LVH +F F + PP P + ++VSL A P+ Sbjct: 44 RNTLLAIIISILVHLGIFFFAPKVEFDQPP-----ASPASSIEVSL---------APPQK 89 Query: 110 PKPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPTPSSNPPTTAAAPA--- 166 P AP+PK +EPP+ +T+AKP+ + + P + P P N PTT A + Sbjct: 90 PAVAPQPK-IEPPKNETIAKPVKK-TPPIK---------PEKHKPIINVPTTKADSSLKV 138 Query: 167 ---------------------DDFMTFTNRNRQKREEAEQAAAQENAAARAAEN-PSAND 204 D ++ + R+ E AA++NA A A E PSA Sbjct: 139 PDTPTLPPPPVQENKLDPSKFPDMASYMKAVQASRQGTEYDAARQNAEAIAKERGPSAEQ 198 Query: 205 IARANIAFQDRRGRGTNGMFQIISMGPRVAQYSFRGWTNDQRRSQSQLIEVDAGFGGDVQ 264 + I ++ GTNG+F+I S R A ++F+GWTND ++ Q EV+AG G D++ Sbjct: 199 MRDERI--KNNFKSGTNGIFEITSKSSRHATFAFKGWTNDYSNAKLQYFEVEAGSGQDIR 256 Query: 265 LAVVNSMITLLRRYYQGDFNFESDKLGRVVILSARLEDTKGLQNFLLNEFFG 316 L ++ MI L+R +YQGDF +ES +L R V SARLED GL++FL+ EFFG Sbjct: 257 LMIIKRMIALIREHYQGDFTWESRRLARSVTQSARLEDNAGLEDFLMMEFFG 308 >ref|YP_003674611.1| hypothetical protein M301_1654 [Methylotenera versatilis 301] gb|ADI30034.1| conserved hypothetical protein [Methylotenera versatilis 301] Length = 303 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 94/272 (34%), Positives = 148/272 (54%), Gaps = 16/272 (5%) Query: 50 RRTALGIVSSVLVHAAVFLFVRAKLNEAPPRLDSPGRPD-APLQVSLIRPPAP-APVAQP 107 R T + I+ S+LVH + + + K++ D+ P L+VSL PP P + +P Sbjct: 35 RNTLIAIIFSLLVHGLLLIVMLPKID-----FDNAASPQPTALEVSLAPPPLPKVEILEP 89 Query: 108 EPPKPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPTPSSNPPTTAAAPAD 167 P KP PE KK P K + + ++++ P+ +VP + P P D Sbjct: 90 TPVKPEPEVKKSPP---KVITRKPSKNTKPSTFSVPD--VIATKQPTPEPTPPKEVKPND 144 Query: 168 ---DFMTFTNRNRQKREEAEQAAAQENAAARAAENPSANDIARANIAFQDRRGRGTNGMF 224 D ++ + KR E AA++NA A A E + + R + + GTNG+F Sbjct: 145 APTDMASYVKAQQAKRNAMEADAARQNAEAVAREVGPSQEKVRDD-RIKSNLKVGTNGIF 203 Query: 225 QIISMGPRVAQYSFRGWTNDQRRSQSQLIEVDAGFGGDVQLAVVNSMITLLRRYYQGDFN 284 +I ++ R A ++F+GWTND ++ + EV+AG G DV+L ++ MI+L+RR+Y GDFN Sbjct: 204 EITNLSGRHAAFAFKGWTNDYSSAKRESFEVEAGTGQDVRLVMIKKMISLIRRHYDGDFN 263 Query: 285 FESDKLGRVVILSARLEDTKGLQNFLLNEFFG 316 +ES +LGR V+ SAR ED+ L+ F++ EFFG Sbjct: 264 WESQRLGREVVKSARPEDSAELEEFMMMEFFG 295 >ref|YP_412985.1| hypothetical protein Nmul_A2302 [Nitrosospira multiformis ATCC 25196] gb|ABB75593.1| hypothetical protein Nmul_A2302 [Nitrosospira multiformis ATCC 25196] Length = 287 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 27/211 (12%) Query: 111 KPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPTPSSNPPTTAAAPADDFM 170 +P P+ +K R+ + +P P ++ VPQ P+P + P D + Sbjct: 95 QPKPKQEKAMENREGSKERP------PVQKTVPQ-------PSPEAERPK-------DLL 134 Query: 171 TFTNRNRQKREEA---EQAAAQENAAARAAENPSANDIARANIAFQDRRGRGTNGMFQII 227 + N R++R E A+ A R PS ++ AN+ ++ + G +G+FQII Sbjct: 135 AYMNETRERRRAGGIFEDEPAEPEAVER---EPSEEELRMANV-MRNLKEPGASGIFQII 190 Query: 228 SMGPRVAQYSFRGWTNDQRRSQSQLIEVDAGFGGDVQLAVVNSMITLLRRYYQGDFNFES 287 MGPR AQ+ FR W D + +L+EVDAG GGD+Q AVV MI L+R+Y++GDFN+ES Sbjct: 191 RMGPRTAQFLFRAWKKDSSVPRRELVEVDAGPGGDIQRAVVRKMIDLIRQYHKGDFNWES 250 Query: 288 DKLGRVVILSARLEDTKGLQNFLLNEFFGRQ 318 +L RVV+LSAR ED+KGL++FL+ EFFG + Sbjct: 251 YRLDRVVVLSARPEDSKGLEDFLIREFFGEE 281 >ref|YP_004295632.1| hypothetical protein NAL212_2679 [Nitrosomonas sp. AL212] gb|ADZ27470.1| hypothetical protein NAL212_2679 [Nitrosomonas sp. AL212] Length = 291 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 130/224 (58%), Gaps = 12/224 (5%) Query: 103 PVAQPEPPKPAPEPKKV---EPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPTPSSN-- 157 P +QP P P PE K+ +P K PT+ ++ P AP P+ Sbjct: 64 PASQPSAPAPQPEKPKIAETQPAPKSPPPVQPPPSRPPTKPKAAEKPSKPKAPIPAQEVA 123 Query: 158 ----PPTTAAAPADDFMTFTNRNRQKREEAEQA-AAQEN-AAARAAENPSANDIARANIA 211 PP A D + N+ + +R AE +QEN A++ AA+ PSA++I AN+ Sbjct: 124 RIKAPPEPPADAPTDLSEYINQAKARRRAAEGIFDSQENTASSSAAKQPSADEIRMANVR 183 Query: 212 FQDRRGRGTNGMFQIISMGPRVAQYSFRGWTNDQRRSQSQLIEVDAGFGGDVQLAVVNSM 271 ++ + GT+G+FQI+ +GPR A++SFR WT Q + Q+I V+AG GD++ A++ M Sbjct: 184 -RNLQNPGTSGIFQILRIGPRTAEFSFRAWTTGQTNPRLQMIRVEAGTDGDIERAIIRRM 242 Query: 272 ITLLRRYYQGDFNFESDKLGRVVILSARLEDTKGLQNFLLNEFF 315 I L+R YY+ DFN+ES +L RVV+LSAR DT GL++FL+ EFF Sbjct: 243 IQLIREYYKEDFNWESHRLHRVVVLSARERDTAGLEDFLMREFF 286 >ref|YP_004696360.1| hypothetical protein Nit79A3_3227 [Nitrosomonas sp. Is79A3] gb|AEJ02961.1| hypothetical protein Nit79A3_3227 [Nitrosomonas sp. Is79A3] Length = 291 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 94 SLIRPPAPAPVAQPEPPKPAPEPKKVEPPRKKTVAKPLARHSAPTRQAVPQRQPLPVAPT 153 SL P AP E PKP E K P +R + A +P P P Sbjct: 62 SLPASPQSAPTPPQEKPKPVEEAKPAPKLPPLPAPSPPSRSQPKPKAAEKPSKPTPTQPA 121 Query: 154 P----SSNPPTTAAAPADDFMTFTNRNRQKREEAEQAAAQENAAARAAENPSANDIARAN 209 + PP A D + N+ + +R E AA AA P+A++I AN Sbjct: 122 KDKVITKTPPKAPPDTATDLSDYINQAKARRRAEGLFDNDEMAANTAAPQPTADEIRMAN 181 Query: 210 IAFQDRRGRGTNGMFQIISMGPRVAQYSFRGWTNDQRRSQSQLIEVDAGFGGDVQLAVVN 269 + ++ + GT+G+FQI+ +GPR A++SFR WT Q + Q I+V+AG G+V+LA++ Sbjct: 182 VR-RNLQTPGTSGIFQILRIGPRTAEFSFRAWTTGQSNPRLQTIQVEAGPDGNVELAMIR 240 Query: 270 SMITLLRRYYQGDFNFESDKLGRVVILSARLEDTKGLQNFLLNEFF 315 MI L+R +Y+ DFN+ES +L RVV+LSAR +D+ GL++FL+ EFF Sbjct: 241 RMIQLIREHYKEDFNWESHRLHRVVVLSAREKDSAGLEDFLMREFF 286