BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1263.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775421.1| glycerate kinase [Herbaspirillum seropedicae... 464 e-129 ref|YP_004228202.1| glycerate kinase [Burkholderia sp. CCGE1001]... 366 4e-99 ref|YP_003906860.1| glycerate kinase [Burkholderia sp. CCGE1003]... 362 8e-98 ref|YP_001895536.1| glycerate kinase [Burkholderia phytofirmans ... 358 1e-96 ref|ZP_02883556.1| Glycerate kinase [Burkholderia graminis C4D1M... 356 4e-96 >ref|YP_003775421.1| glycerate kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63513.1| glycerate kinase protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 314/384 (81%), Positives = 335/384 (87%) Query: 1 MTLASSTAHAPVVVIAPDSFKGSLSAQEVASAIGAGIKAALPHAQVRLCPIADGGEGTLD 60 MT + PVVVIAPDSFKGSLSA++VA AIGAGI+AA+P A++RL PIADGGEGTLD Sbjct: 1 MTSSRPALRPPVVVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLD 60 Query: 61 ALMHAGGERLTVDCRNAAGQPASAPVGILKDGSAVVESAAIVGITDAAGMAVAVDQRTTL 120 ALMHAGGER V CRNAAGQ A VGILKDGSAVVESAAIVG+TD AG AVAV++R+TL Sbjct: 61 ALMHAGGERFAVACRNAAGQMTEALVGILKDGSAVVESAAIVGLTDTAGTAVAVERRSTL 120 Query: 121 GVGDAIGQLLDRGARHFLVALGGSSTNDGGAGLLAALGVKFLDAAGAIVPPVPAQLQRVT 180 GVGDAI LLDRGAR FLVALGGSSTNDGGAGLLAALGV F DAAG V P PA+L RV Sbjct: 121 GVGDAIKALLDRGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAGVEVAPAPAELHRVV 180 Query: 181 QVDASGLDARVKEAHFVAMSDVDNPLCGEEGATAVFGPQKGVQPAQVALLDGALAHFAGV 240 +VDASGLDARVKEAHFVAMSDVDNPLCG EGATAVFGPQKGVQP QVA LD LAHFA V Sbjct: 181 RVDASGLDARVKEAHFVAMSDVDNPLCGAEGATAVFGPQKGVQPDQVAPLDQTLAHFAQV 240 Query: 241 LEQALGRHAADQPGAGAAGGLGYALLMLGAQFRSGAETVADHIGLDEALAGADWLITGEG 300 LE+ALGR AA PGAGAAGGLGYALLMLGAQFRSGA+TVADHIGLD+AL GADWLITGEG Sbjct: 241 LEEALGRQAATLPGAGAAGGLGYALLMLGAQFRSGAQTVADHIGLDQALTGADWLITGEG 300 Query: 301 RSDAQTLHGKAPFIASQRARRAGVPTTLLSGGIDRKSLEKLQTSFSGCFSITFGPMSLQD 360 RSDAQTLHGKAPFIASQRAR+ GVP TLLSGGIDR SL +LQTSFSGCFSI FGP +LQD Sbjct: 301 RSDAQTLHGKAPFIASQRARQLGVPATLLSGGIDRHSLAQLQTSFSGCFSIVFGPGALQD 360 Query: 361 AIAQAPGLLKDSGEQLARLWQAAA 384 AIAQAP LL+ S EQLARLWQ+AA Sbjct: 361 AIAQAPQLLQASAEQLARLWQSAA 384 >ref|YP_004228202.1| glycerate kinase [Burkholderia sp. CCGE1001] gb|ADX55142.1| glycerate kinase [Burkholderia sp. CCGE1001] Length = 381 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 242/374 (64%), Positives = 284/374 (75%) Query: 6 STAHAPVVVIAPDSFKGSLSAQEVASAIGAGIKAALPHAQVRLCPIADGGEGTLDALMHA 65 ++ PVVVIAPDSFKGSLSA++VA AI +G++ A P A+VR+CP+ADGGEGTLDA++ Sbjct: 3 NSPSTPVVVIAPDSFKGSLSAEQVAQAIASGVRRARPDAEVRICPMADGGEGTLDAMLTR 62 Query: 66 GGERLTVDCRNAAGQPASAPVGILKDGSAVVESAAIVGITDAAGMAVAVDQRTTLGVGDA 125 GGER T+ R AAG A G+L DGSA+VE+A +VGITD GM V V+ R+T G+G+A Sbjct: 63 GGERRTLSVRGAAGPVRDALAGVLADGSAIVETAEVVGITDPVGMGVPVEARSTRGMGEA 122 Query: 126 IGQLLDRGARHFLVALGGSSTNDGGAGLLAALGVKFLDAAGAIVPPVPAQLQRVTQVDAS 185 IG LLD G R F VALGGSSTNDGGAGLLA LGVK DA + P P QL RV +VD S Sbjct: 123 IGALLDAGVRRFFVALGGSSTNDGGAGLLAGLGVKLFDAQDNEIEPTPEQLARVARVDVS 182 Query: 186 GLDARVKEAHFVAMSDVDNPLCGEEGATAVFGPQKGVQPAQVALLDGALAHFAGVLEQAL 245 LDAR+ +AHF+ MSDVDNPL GE GATAVFGPQKGV+P QVA +D ALA +A +LE AL Sbjct: 183 QLDARLADAHFIGMSDVDNPLTGEHGATAVFGPQKGVKPDQVATIDAALARYADLLEAAL 242 Query: 246 GRHAADQPGAGAAGGLGYALLMLGAQFRSGAETVADHIGLDEALAGADWLITGEGRSDAQ 305 GR A + PGAGAAGGLG+AL +LGAQF GAETVA IGLD ALAGA+WLITGEGRSD Q Sbjct: 243 GRTARELPGAGAAGGLGFALHLLGAQFEPGAETVARQIGLDAALAGANWLITGEGRSDVQ 302 Query: 306 TLHGKAPFIASQRARRAGVPTTLLSGGIDRKSLEKLQTSFSGCFSITFGPMSLQDAIAQA 365 TLHGKAPFIA + A+ AGVP TLLSG +D +L +L FSGCFS GP++L+ AI A Sbjct: 303 TLHGKAPFIACRHAQAAGVPATLLSGAVDSAALPRLADYFSGCFSPAPGPITLEFAIRDA 362 Query: 366 PGLLKDSGEQLARL 379 LL D EQL RL Sbjct: 363 ARLLADEAEQLTRL 376 >ref|YP_003906860.1| glycerate kinase [Burkholderia sp. CCGE1003] gb|ADN57569.1| glycerate kinase [Burkholderia sp. CCGE1003] Length = 381 Score = 362 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 243/374 (64%), Positives = 282/374 (75%) Query: 6 STAHAPVVVIAPDSFKGSLSAQEVASAIGAGIKAALPHAQVRLCPIADGGEGTLDALMHA 65 +++ PVVVIAPDSFKGSLSA++VA AI G++ A A+VR+CP+ADGGEGTL+A++ Sbjct: 3 NSSSTPVVVIAPDSFKGSLSAEQVAQAIATGVRRARLDAEVRICPMADGGEGTLEAMLTR 62 Query: 66 GGERLTVDCRNAAGQPASAPVGILKDGSAVVESAAIVGITDAAGMAVAVDQRTTLGVGDA 125 GGER T+ R AAG A GIL DGSAVVE+A IVGITD GM V V+ R+T G+G+A Sbjct: 63 GGERRTLSVRGAAGPLREALTGILADGSAVVETAEIVGITDPVGMGVPVEARSTRGMGEA 122 Query: 126 IGQLLDRGARHFLVALGGSSTNDGGAGLLAALGVKFLDAAGAIVPPVPAQLQRVTQVDAS 185 IG LLD G R F VALGGSSTNDGGAGLLA LG+K DA + P P QL RV +VDAS Sbjct: 123 IGALLDAGVRRFFVALGGSSTNDGGAGLLAGLGLKLFDAQDNELEPTPEQLARVARVDAS 182 Query: 186 GLDARVKEAHFVAMSDVDNPLCGEEGATAVFGPQKGVQPAQVALLDGALAHFAGVLEQAL 245 LDAR+ FV MSDVDNPL GE GATAVFGPQKGV+P QVA +D ALAH+A +LE AL Sbjct: 183 RLDARLAHTEFVGMSDVDNPLTGEHGATAVFGPQKGVKPEQVATIDAALAHYADLLEAAL 242 Query: 246 GRHAADQPGAGAAGGLGYALLMLGAQFRSGAETVADHIGLDEALAGADWLITGEGRSDAQ 305 GR A + PGAGAAGGLG+AL MLGAQF GAETVA +GLD ALAGA+WLITGEGRSD Q Sbjct: 243 GRTARNSPGAGAAGGLGFALHMLGAQFEPGAETVAREVGLDAALAGANWLITGEGRSDVQ 302 Query: 306 TLHGKAPFIASQRARRAGVPTTLLSGGIDRKSLEKLQTSFSGCFSITFGPMSLQDAIAQA 365 TLHGKAPFIA + A+ AGVP TLLSG +D +L +L FSGCFS GP++L+ AI A Sbjct: 303 TLHGKAPFIACRHAQSAGVPATLLSGAVDSAALPRLAEYFSGCFSPAPGPITLEFAIRDA 362 Query: 366 PGLLKDSGEQLARL 379 LL D EQL RL Sbjct: 363 VRLLADEAEQLTRL 376 >ref|YP_001895536.1| glycerate kinase [Burkholderia phytofirmans PsJN] gb|ACD16312.1| Glycerate kinase [Burkholderia phytofirmans PsJN] Length = 381 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 242/374 (64%), Positives = 279/374 (74%) Query: 6 STAHAPVVVIAPDSFKGSLSAQEVASAIGAGIKAALPHAQVRLCPIADGGEGTLDALMHA 65 ++ +PVVVIAPDSFKGSLSA++VA AI AGIK A P A+VR+CP+ADGGEGTLDA++ Sbjct: 3 NSPSSPVVVIAPDSFKGSLSAEQVAQAIAAGIKRARPAAEVRICPMADGGEGTLDAMLTR 62 Query: 66 GGERLTVDCRNAAGQPASAPVGILKDGSAVVESAAIVGITDAAGMAVAVDQRTTLGVGDA 125 GGER T+ R AAG A G+L DGSA++E+A +VGITD GM V V+ R+T G+G+A Sbjct: 63 GGERRTLSVRGAAGPVREALTGLLADGSAIIETAEVVGITDPVGMGVPVEARSTRGMGEA 122 Query: 126 IGQLLDRGARHFLVALGGSSTNDGGAGLLAALGVKFLDAAGAIVPPVPAQLQRVTQVDAS 185 I L+D G R F VALGGSSTNDGGAGLLA LG+K DA + P QL R+ +VD S Sbjct: 123 IRALMDAGVRRFFVALGGSSTNDGGAGLLAGLGLKLFDAQDNELDATPEQLARLARVDVS 182 Query: 186 GLDARVKEAHFVAMSDVDNPLCGEEGATAVFGPQKGVQPAQVALLDGALAHFAGVLEQAL 245 LDAR+ FV MSDVDNPL GE GATAVFGPQKGV+P QVA LD ALA FA +LE AL Sbjct: 183 QLDARLSSTQFVGMSDVDNPLTGEHGATAVFGPQKGVKPEQVATLDAALARFADLLEPAL 242 Query: 246 GRHAADQPGAGAAGGLGYALLMLGAQFRSGAETVADHIGLDEALAGADWLITGEGRSDAQ 305 GR A PGAGAAGGLG+AL MLGAQF GAETVA IGLD AL GADWLITGEGRSD Q Sbjct: 243 GRTARQLPGAGAAGGLGFALHMLGAQFEPGAETVARQIGLDAALEGADWLITGEGRSDVQ 302 Query: 306 TLHGKAPFIASQRARRAGVPTTLLSGGIDRKSLEKLQTSFSGCFSITFGPMSLQDAIAQA 365 TLHGKAPFIA + A+ AGVP TLLSGG+D +L +L FSGCFS GP++L+ AI A Sbjct: 303 TLHGKAPFIACRHAQAAGVPATLLSGGVDSAALPRLAEYFSGCFSPAPGPITLEVAIRDA 362 Query: 366 PGLLKDSGEQLARL 379 LL D EQL RL Sbjct: 363 ARLLADEAEQLTRL 376 >ref|ZP_02883556.1| Glycerate kinase [Burkholderia graminis C4D1M] gb|EDT10988.1| Glycerate kinase [Burkholderia graminis C4D1M] Length = 381 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 239/374 (63%), Positives = 278/374 (74%) Query: 6 STAHAPVVVIAPDSFKGSLSAQEVASAIGAGIKAALPHAQVRLCPIADGGEGTLDALMHA 65 ++ PVVVIAPDSFKGSLSA++VA AI +G++ A P A+VR+CP+ADGGEGTLDA++ + Sbjct: 3 NSPSTPVVVIAPDSFKGSLSAEQVAQAIASGVRRARPDAEVRICPMADGGEGTLDAMLTS 62 Query: 66 GGERLTVDCRNAAGQPASAPVGILKDGSAVVESAAIVGITDAAGMAVAVDQRTTLGVGDA 125 GGER T+ R AAG A G+L DGSA+VE+A IVGITD GM V V R T G+G+A Sbjct: 63 GGERRTLSVRGAAGPVRDALTGVLADGSAIVETAEIVGITDPVGMGVPVQARNTRGMGEA 122 Query: 126 IGQLLDRGARHFLVALGGSSTNDGGAGLLAALGVKFLDAAGAIVPPVPAQLQRVTQVDAS 185 I LLD G R F VALGGSSTNDGGAGLL LG+K DA G + P P QL RV +VD S Sbjct: 123 ISALLDAGVRRFFVALGGSSTNDGGAGLLVGLGLKLFDAQGGELEPSPEQLARVARVDVS 182 Query: 186 GLDARVKEAHFVAMSDVDNPLCGEEGATAVFGPQKGVQPAQVALLDGALAHFAGVLEQAL 245 LDAR+ F+ MSDVDNPL GE GATAVFGPQKGV+P QVA +D ALA +A +LE AL Sbjct: 183 QLDARLAGTQFIGMSDVDNPLTGEHGATAVFGPQKGVKPEQVATIDAALARYADLLEAAL 242 Query: 246 GRHAADQPGAGAAGGLGYALLMLGAQFRSGAETVADHIGLDEALAGADWLITGEGRSDAQ 305 GR A D PGAGAAGGLG+AL MLGAQF GAETVA +GLD AL GA+WLITGEGRSD Q Sbjct: 243 GRSARDLPGAGAAGGLGFALHMLGAQFEPGAETVARQLGLDAALEGANWLITGEGRSDVQ 302 Query: 306 TLHGKAPFIASQRARRAGVPTTLLSGGIDRKSLEKLQTSFSGCFSITFGPMSLQDAIAQA 365 TLHGKAPFIA + A+ AGVP TLLSG +D +L +L FSGCFS GP++L+ AI A Sbjct: 303 TLHGKAPFIACRHAQAAGVPATLLSGAVDSAALPRLAEFFSGCFSPAPGPITLEFAIRDA 362 Query: 366 PGLLKDSGEQLARL 379 LL D EQL RL Sbjct: 363 ARLLADEAEQLTRL 376