BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1259.p         (185 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspiril...    69   2e-10
ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotener...    58   6e-07

>ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64598.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 11/177 (6%)

Query: 1   MKKLLAASAIAMALSFAGTAAQAAPLTFS-----SNGVATFSNVITTGA-GSTFSDNYTF 54
           MKKL+ +  +A A     + A AA L  +     ++  +TF+     G  G TF +N+TF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATSTFNARYGEGTTGLTFLENFTF 60

Query: 55  SLPGNSSA-SGSLTTITLGQLLGLAINSVTLTNTTTNTVFNAVLNSSSTATGTNYSIPVT 113
           ++    SA S ++ +I L  L  L I+S TL+          +L   +      +S+   
Sbjct: 61  TVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNGRTITGTPLLEGDTQT----FSLRTD 116

Query: 114 LLTGGSYKLNIAGSVSGLSGGFYAGGLNVAAVPEASTTAMMLGGLALVGFVALRRRR 170
            L+ G Y L++AG++ G  GG +AG ++VA VPEASTTAMMLGGL ++GF A RRRR
Sbjct: 117 GLSTGLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRR 173


>ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotenera mobilis JLW8]
 gb|ACT48685.1| protein of unknown function DUF1555 [Methylotenera mobilis JLW8]
          Length = 162

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 84/169 (49%), Gaps = 12/169 (7%)

Query: 3   KLLAASAIAMALSFAGTAAQAAPLTFSSNGVATFSNVITTGAGSTFSDNYTFSLPGNSSA 62
           KL+    I  A+  A + AQAA     +           + A  +FSD   FSL G S  
Sbjct: 2   KLVKQLLIGAAIFAAVSNAQAATYNLGTLSSDYTEFGSYSVAKGSFSDTINFSLAGTSDT 61

Query: 63  SGSLTTI--TLGQLLGLAINSVTLTNTTTNTVFNAVLNSSSTATGTNYSIPVTLLTGGSY 120
              + +I   +G++  L I  +TL+     T            +GT++S   T L  G Y
Sbjct: 62  DFGVGSIFVKVGKITRLDITGLTLSLFKGTTDLGL--------SGTDFS--ATALGAGDY 111

Query: 121 KLNIAGSVSGLSGGFYAGGLNVAAVPEASTTAMMLGGLALVGFVALRRR 169
            L + G+ +G  GG YAGG+NV+ VPEA T AMML GL L+GFVA RRR
Sbjct: 112 HLLVTGNATGTLGGSYAGGINVSPVPEADTYAMMLAGLGLMGFVARRRR 160