BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1256.p (468 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003872410.1| membrane protein involved in the export of O... 127 6e-27 ref|YP_003948797.1| polysaccharide biosynthesis protein [Paeniba... 123 8e-26 ref|YP_003869515.1| membrane protein involved in the export of O... 93 1e-16 ref|YP_001833126.1| polysaccharide biosynthesis protein [Beijeri... 92 2e-16 ref|YP_003945429.1| polysaccharide biosynthesis protein [Paeniba... 91 3e-16 >ref|YP_003872410.1| membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] gb|ADM71872.1| Membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] Length = 459 Score = 127 bits (318), Expect = 6e-27, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 211/457 (46%), Gaps = 43/457 (9%) Query: 30 IVKSSGKTLLTTVGVTAIGFIISVLTARILGPEGRGLLSGALLIISLSSSIATCGLAYTY 89 + K+ +T V + + S+LTAR+LG EG+G L+ L +L S+ + GL + Sbjct: 16 LAKTIMRTSFNNFFVLIVTTLTSILTARMLGVEGKGELAAVLFWPTLIGSVLSFGLPTSL 75 Query: 90 IYHRGAGQQFAQKRFVFLSALFIGLLAALLA------LVGLMFN---------HNVELRE 134 IY+ ++ + +L+I L A+LLA + L N + Sbjct: 76 IYN--IKKKTGTTEELLTLSLWIQLPASLLAGAVAWICMPLWLNGYGADIIQLSQLYCAA 133 Query: 135 HLPLIIGFALITALQNYLINLTQMQPSLSFLNVTRIAGVLLNVTALGLLYLLLR-PVDFV 193 +PL + AL TAL L + L + + G L+ + +GLL + L V+F Sbjct: 134 AIPLAVLTALTTALSQGLDRFSVYNGLLFYYPLLNFIG-LVTLWLMGLLNVQLAGAVNFA 192 Query: 194 QILIGQLVCALLLIGLCLNWARSNVFSTAAPDQQQAAAPQAKTSQMLKYAFNQHGTVLVG 253 + LV A L + +N F++ +Q P Y +G L+G Sbjct: 193 ASFLA-LVWAFLRLRKYMNLRAFRPFTS-----RQVLRP------YYSYGARVYGMELMG 240 Query: 254 LALTNFDKVYLLKVATIVEFGYYSLAFTTSRLIGVLYDAMNTALYSRYAGKEEGELSRSI 313 T DK+ ++ + + FG YS+ + SR+ V+ +A+ + + G E ++ ++ Sbjct: 241 TLSTQTDKIVIVALLSPKAFGLYSVVYALSRVFNVVQNAVTNVTFPKVTGMEHSKIVETV 300 Query: 314 NMAFRFTLLPMLLLAALGAVLAPWLIHLVYGPKFASVTPTFIILMFECVISGAGWTLAQR 373 AFR ++ ML++ + +++ L+YGP F + TF +L EC+I G W LA Sbjct: 301 GRAFRISMAAMLIVIVPALFIGRYMLGLLYGPAFLEASLTFYLLSLECIIGGGSWILASA 360 Query: 374 FNAAGRPGLVLVRQLISIVPVVALL----PFLPSENIAVYLALLMLLGASLRMAITLVIY 429 FNA GRPGLVL RQ+++ V L P + IA+ L L+GA +R+A +L + Sbjct: 361 FNALGRPGLVLFRQIVAYAITVGLFFICTPIFGLDGIAIAL----LVGACVRLAFSLFSF 416 Query: 430 PYVLHEPIPRLFPSADEVRKVIAMARAQWQRRMHKGE 466 P + P+ R+ ++ VI Q++ KGE Sbjct: 417 PMFFNVPLSRIIFDKSDITFVIQTI----QKKRRKGE 449 >ref|YP_003948797.1| polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] gb|ADO58556.1| Polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] Length = 459 Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats. Identities = 127/462 (27%), Positives = 207/462 (44%), Gaps = 53/462 (11%) Query: 30 IVKSSGKTLLTTVGVTAIGFIISVLTARILGPEGRGLLSGALLIISLSSSIATCGLAYTY 89 + K+ +T V + + S+LTAR+LG EG+G L+ L +L S+ + GL + Sbjct: 16 LAKTIMRTSFNNFFVLIVTTLTSILTARMLGVEGKGELAAVLFWPTLIGSVLSFGLPTSL 75 Query: 90 IYHRGAGQQFAQKRFVFLSALFIGLLAALLA------LVGLMFN---------HNVELRE 134 IY+ ++ +L+I L A+LLA + L N + Sbjct: 76 IYNLKKKTGTTEELLAL--SLWIQLPASLLAGAVAWICMPLWLNGYGADIIQLSQIYCAA 133 Query: 135 HLPLIIGFALITALQNYLINLTQMQPSLSFLNVTRIAGVLLNVTALGLLYLLLRPVDFVQ 194 +PL + AL TAL +Q S N LLN L L+L+ Sbjct: 134 AVPLAVLTALTTAL-------SQGLDRFSVYNGLLFYYPLLNFIGLVTLWLM-------G 179 Query: 195 ILIGQLVCALLLIG--LCLNWARSNVFSTAAPDQQQAAAPQAKTSQMLK----YAFNQHG 248 +L QL A+ L L WA F A + Q+L+ Y +G Sbjct: 180 LLNVQLAGAVNFAASFLALMWA----FLRLRKHMNLRAFRPLTSRQVLRPYYSYGARVYG 235 Query: 249 TVLVGLALTNFDKVYLLKVATIVEFGYYSLAFTTSRLIGVLYDAMNTALYSRYAGKEEGE 308 L+G T DK+ ++ + + FG YS+ + SR+ V+ +A+ + + G E + Sbjct: 236 MELMGTLSTQTDKIVIVALLSPKAFGLYSVVYALSRVFNVVQNAVTNVTFPKVTGMEHSK 295 Query: 309 LSRSINMAFRFTLLPMLLLAALGAVLAPWLIHLVYGPKFASVTPTFIILMFECVISGAGW 368 + ++ AFR ++ ML++ + +++ L+YGP F + TF +L EC+I G W Sbjct: 296 IVETVGRAFRISMAAMLIVIVPALFIGRYMLGLLYGPAFLEASLTFYLLSLECIIGGGSW 355 Query: 369 TLAQRFNAAGRPGLVLVRQLISIVPVVALL----PFLPSENIAVYLALLMLLGASLRMAI 424 LA FNA GRPGLVL RQ+++ V L P + IA+ L L+GA +R+A Sbjct: 356 ILASAFNALGRPGLVLFRQIVAYAITVGLFFICTPIFGLDGIAIAL----LVGACVRLAF 411 Query: 425 TLVIYPYVLHEPIPRLFPSADEVRKVIAMARAQWQRRMHKGE 466 +L +P + P+ R+ ++ V+ Q++ KGE Sbjct: 412 SLFSFPMFFNVPLSRIIFDKSDITFVLQTI----QKKRRKGE 449 >ref|YP_003869515.1| membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] gb|ADM68977.1| Membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] Length = 459 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 109/436 (25%), Positives = 185/436 (42%), Gaps = 33/436 (7%) Query: 28 KEIVKSSGKTLLTTVGVTAIGFIISVLTARILGPEGRGLLSGALLIISLSSSIATC---G 84 K+ ++ KT++ ++ + + + VLTAR LGP GRG + +++ S +A C G Sbjct: 25 KDNSSAAVKTMIFSMLILVVNMLTGVLTARFLGPTGRGEQTA---MVNWSQFLAFCMSFG 81 Query: 85 LAYTYIYHRGAGQQFAQKRFVFLSALFIGLLAALLALVGLMFNHNVELREHLPLIIGFAL 144 + IY+ + K + L+ L + L LVG+ F LR +I FA Sbjct: 82 VPSALIYNAKRKPEETGKLY-GLALLLATMFGGLATLVGV-FLIPYWLRSFSSSVILFAQ 139 Query: 145 ITALQNYLINLTQMQPSL-------SFLNVTRIAGVLLNVTALGLLYLLLRPVDFVQILI 197 + + LI ++Q+ +L N+ R L + L +L L + L Sbjct: 140 CSMMMCPLIAISQINNALLQVRSEYKQYNLFRYLVPLSTLLGLAILILTGNMNPYTSALA 199 Query: 198 GQLVCALLLIGLCLNWARSNVFSTAAPDQQQAAAPQAKTS-----QMLKYAFNQHGTVLV 252 L + IG+ + R P+ K S + Y +G L+ Sbjct: 200 YLLPGLPIYIGVTIRMIR-------------LYKPKVKNSWTQFKNLFTYGMGSYGNDLM 246 Query: 253 GLALTNFDKVYLLKVATIVEFGYYSLAFTTSRLIGVLYDAMNTALYSRYAGKEEGELSRS 312 G T D++ + + + G Y++A + +R++ V ++ L+ + +G + E Sbjct: 247 GQVSTYIDQILIAGLLRPADLGLYAVAVSLARMVNVFSTSIIVVLFPKASGLNKEEAVAI 306 Query: 313 INMAFRFTLLPMLLLAALGAVLAPWLIHLVYGPKFASVTPTFIILMFECVISGAGWTLAQ 372 AFR T L A + ++AP++ L+YG +F F L+ E ISG LAQ Sbjct: 307 TFRAFRVTSTATFLAAVMLMLIAPFVFTLLYGQEFKQALTVFRFLVLEVAISGGTMVLAQ 366 Query: 373 RFNAAGRPGLVLVRQLISIVPVVALLPFLPSENIAVYLALLMLLGASLRMAITLVIYPYV 432 +F A G+P LV + Q + + V+ LL L + + ML LR L +V Sbjct: 367 QFMALGKPKLVTILQGVGLALVIPLLSILVPKYGLTGAGIAMLSSGILRFIFILCNVKFV 426 Query: 433 LHEPIPRLFPSADEVR 448 L IPRL S + + Sbjct: 427 LKMKIPRLLISKQDFQ 442 >ref|YP_001833126.1| polysaccharide biosynthesis protein [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB95637.1| polysaccharide biosynthesis protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 466 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 104/410 (25%), Positives = 186/410 (45%), Gaps = 27/410 (6%) Query: 53 VLTARILGPEGRGLLSGALLIISLSSSIATCGLAYTYIYHRGAGQQFAQKRFVFLSALFI 112 ++TA LGP GRG + LL S I + GL +Y+ + K + F SAL I Sbjct: 69 MITAWSLGPAGRGTQAAILLGALTLSGICSFGLHTALVYNMKSDP--PNKSYYFGSALLI 126 Query: 113 GLLAALLALVGLMFNHNV---ELREHLPL---IIGFALITALQNYLINLTQMQPSLSFLN 166 GL+ +L+ + F + EH L ++ F + ++ +Y++N + F Sbjct: 127 GLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLLTFVVPVSVISYVLNGV-LDGHHEFNF 185 Query: 167 VTRIAGVLLN--VTALGLLYLLLRPVDFVQILIGQLVCALLLIGLCLNWARSNVFSTAAP 224 V+R+ G+L N + L L + + L+ + + + L W +++ A P Sbjct: 186 VSRL-GLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAM-LAWRATSILRPATP 243 Query: 225 DQQQAAAPQAKTSQMLKYAFNQHGTVLVGLALTNFDKVYLLKVATIVEFGYYSLAFTTSR 284 A +M Y+ G L+ D+ ++ + G YS+A T R Sbjct: 244 FHG------ACLKRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATTAER 297 Query: 285 LIGVLYDAMNTALYSRYAGKEEGELSRSINMAFRFTLLPMLLLAALGAVLAPWLIHLVYG 344 ++G++ ++ T + AG+ + ++ + + R T + A + AP+ + L+YG Sbjct: 298 VLGIIPASILTVTFPSVAGRSKDDIREIVGITARLTSIVTTSAAVFLGIFAPYFLLLLYG 357 Query: 345 PKFASVTPTFIILMFECVISGAGWTLAQRFNAAGRPGLVLVRQLISIV----PVVALLPF 400 PKFA F IL+ ++S A T Q ++ +GRP +V V + I V +V L+PF Sbjct: 358 PKFAEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFEAIGFVIAATSMVILIPF 417 Query: 401 LPSENIAVYLALLMLLGASLRMAITLVIYPYVLHEPIPRLFPSADEVRKV 450 +A+ +L A+ R+ + L P VLH IPRL + ++++V Sbjct: 418 YGINGVAI----AAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIKRV 463 >ref|YP_003945429.1| polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] gb|ADO55188.1| Polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] Length = 442 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 111/448 (24%), Positives = 188/448 (41%), Gaps = 42/448 (9%) Query: 28 KEIVKSSGKTLLTTVGVTAIGFIISVLTARILGPEGRGLLSGALLIISLSSSIATC---G 84 K+ ++ KT++ ++ + + + VLTAR LGP GRG + +++ S +A C G Sbjct: 8 KDNSSAAVKTMIFSMLILVVNMLTGVLTARFLGPTGRGEQTA---MVNWSQFLAFCMSFG 64 Query: 85 LAYTYIYHRGAGQQFAQKRFVFLSALFIGLLAALLALVGLMFNHNVELREHLPLIIGFAL 144 + IY+ + K + L+ L + + L+G+ F LR +I FA Sbjct: 65 VPSALIYNAKRKPEETGKLYG-LALLLATVFGGMATLIGV-FLIPYWLRSFSSSVILFAQ 122 Query: 145 ITALQNYLINLTQMQPSL-------SFLNVTRIAGVLLNVTALGLLYLLLRPVDFVQILI 197 + + LI ++Q+ +L N+ R L + L +L L + L Sbjct: 123 CSMMMCPLIAISQINNALLQVRSEYKQYNLFRYLVPLSTLLGLAILILTGTMNPYTSALA 182 Query: 198 GQLVCALLLIGLCLNWARSNVFSTAAPDQQQAAAPQAKTS-----QMLKYAFNQHGTVLV 252 L + IG+ + R P+ K S + Y +G L+ Sbjct: 183 YLLPGLPIYIGVTIRMIR-------------LYKPKVKNSWTQFKNLFTYGMGSYGNDLM 229 Query: 253 GLALTNFDKVYLLKVATIVEFGYYSLAFTTSRLIGVLYDAMNTALYSRYAGKEEGELSRS 312 G T D++ + + + G Y++A + +R++ V ++ L+ + +G ++ E Sbjct: 230 GQVSTYIDQILIAGLLRPADLGLYAVAVSLARMVNVFSTSIIVVLFPKASGLDKEEAVAI 289 Query: 313 INMAFRFTLLPMLLLAALGAVLAPWLIHLVYGPKFASVTPTFIILMFECVISGAGWTLAQ 372 AFR T L A + ++AP++ L+YG +F F L+ E ISG LAQ Sbjct: 290 TFRAFRVTSTATFLAAVMLMLVAPFVFTLLYGQEFKQALTVFRFLVLEVAISGGTMVLAQ 349 Query: 373 RFNAAGRPGLVLVRQLISIVPVVALLPFLPSENIAVYLALLMLLGASLRMAITLVIYPYV 432 +F A G+P LV + Q + + V+ LL L + ML LR L +V Sbjct: 350 QFMALGKPKLVTILQGVGLALVIPLLSILVPRYGLTGAGIAMLSSGILRFVFILCNVKFV 409 Query: 433 LHEPIPRLFPSADEVRKVIAMARAQWQR 460 L IPRL VI+ QW R Sbjct: 410 LKMKIPRL---------VISKQDFQWLR 428