BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1253.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003872410.1| membrane protein involved in the export of O... 99 2e-18 ref|YP_003948797.1| polysaccharide biosynthesis protein [Paeniba... 98 3e-18 ref|YP_003869515.1| membrane protein involved in the export of O... 84 5e-14 emb|CCC84036.1| putative O-antigen transporter [Paenibacillus po... 84 5e-14 ref|YP_003945429.1| polysaccharide biosynthesis protein [Paeniba... 84 5e-14 >ref|YP_003872410.1| membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] gb|ADM71872.1| Membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] Length = 459 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 112/453 (24%), Positives = 198/453 (43%), Gaps = 25/453 (5%) Query: 6 IVKSSGRTLLTTVGVTVLGFAISVLTTRMLGPEGRGLLSGSLLIIGLSTALGRWDLAYSY 65 + K+ RT V ++ S+LT RMLG EG+G L+ L L ++ + L S Sbjct: 16 LAKTIMRTSFNNFFVLIVTTLTSILTARMLGVEGKGELAAVLFWPTLIGSVLSFGLPTSL 75 Query: 66 IYF--RGTGLYFRQRRFVYLSALVIGVGTLLLAAVGVLINDNTILHKHIGLITAFAVVTG 123 IY + TG + LS + +LL AV + + +I + Sbjct: 76 IYNIKKKTG---TTEELLTLSLWIQLPASLLAGAVAWICMPLWLNGYGADIIQLSQLYCA 132 Query: 124 LQNYLFNLSQLETSLAFLNLTRIS---GAIFNLAALG----VLYWLCRPVQFEYILIGQM 176 L L+ L T+L+ L R S G +F L V WL + + L G + Sbjct: 133 AAIPLAVLTALTTALS-QGLDRFSVYNGLLFYYPLLNFIGLVTLWLMGLLNVQ--LAGAV 189 Query: 177 VCALVLIAMCLQWCRLYLFSARPAPAELASLPRARTSDMVKYALNQHGTGLVALAMTYFD 236 A +A+ + RL + A S R Y +G L+ T D Sbjct: 190 NFAASFLALVWAFLRLRKYMNLRAFRPFTS--RQVLRPYYSYGARVYGMELMGTLSTQTD 247 Query: 237 KVYLLKVGTIEEFGYYTLAFTTSRLIGAIHEAMNTALYSRYAGKEEGEMNSSINTAFRFT 296 K+ ++ + + + FG Y++ + SR+ + A+ + + G E ++ ++ AFR + Sbjct: 248 KIVIVALLSPKAFGLYSVVYALSRVFNVVQNAVTNVTFPKVTGMEHSKIVETVGRAFRIS 307 Query: 297 LVPMLVLAGIGSVLAPWLIRLAYGPKFDSVTPSFIILMFECVLSGAAWTLAQRFNAGGKP 356 + ML++ + +++ L YGP F + +F +L EC++ G +W LA FNA G+P Sbjct: 308 MAAMLIVIVPALFIGRYMLGLLYGPAFLEASLTFYLLSLECIIGGGSWILASAFNALGRP 367 Query: 357 GLILRRHVLSLIPLV----LMLPFLPKENIAVYLALLMLLGAVLRMIITLAMYPYVLKQP 412 GL+L R +++ V + P + IA+ L L+GA +R+ +L +P P Sbjct: 368 GLVLFRQIVAYAITVGLFFICTPIFGLDGIAIAL----LVGACVRLAFSLFSFPMFFNVP 423 Query: 413 VPRLVPTLAEIRKLVGMIKARWERRRLGGNESA 445 + R++ ++I ++ I+ + + L E A Sbjct: 424 LSRIIFDKSDITFVIQTIQKKRRKGELKDAEFA 456 >ref|YP_003948797.1| polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] gb|ADO58556.1| Polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] Length = 459 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 113/453 (24%), Positives = 198/453 (43%), Gaps = 25/453 (5%) Query: 6 IVKSSGRTLLTTVGVTVLGFAISVLTTRMLGPEGRGLLSGSLLIIGLSTALGRWDLAYSY 65 + K+ RT V ++ S+LT RMLG EG+G L+ L L ++ + L S Sbjct: 16 LAKTIMRTSFNNFFVLIVTTLTSILTARMLGVEGKGELAAVLFWPTLIGSVLSFGLPTSL 75 Query: 66 IYF--RGTGLYFRQRRFVYLSALVIGVGTLLLAAVGVLINDNTILHKHIGLITAFAVVTG 123 IY + TG + LS + +LL AV + + +I + Sbjct: 76 IYNLKKKTG---TTEELLALSLWIQLPASLLAGAVAWICMPLWLNGYGADIIQLSQIYCA 132 Query: 124 LQNYLFNLSQLETSLAFLNLTRIS---GAIFNLAALG----VLYWLCRPVQFEYILIGQM 176 L L+ L T+L+ L R S G +F L V WL + + L G + Sbjct: 133 AAVPLAVLTALTTALS-QGLDRFSVYNGLLFYYPLLNFIGLVTLWLMGLLNVQ--LAGAV 189 Query: 177 VCALVLIAMCLQWCRLYLFSARPAPAELASLPRARTSDMVKYALNQHGTGLVALAMTYFD 236 A +A+ + RL A L S R Y +G L+ T D Sbjct: 190 NFAASFLALMWAFLRLRKHMNLRAFRPLTS--RQVLRPYYSYGARVYGMELMGTLSTQTD 247 Query: 237 KVYLLKVGTIEEFGYYTLAFTTSRLIGAIHEAMNTALYSRYAGKEEGEMNSSINTAFRFT 296 K+ ++ + + + FG Y++ + SR+ + A+ + + G E ++ ++ AFR + Sbjct: 248 KIVIVALLSPKAFGLYSVVYALSRVFNVVQNAVTNVTFPKVTGMEHSKIVETVGRAFRIS 307 Query: 297 LVPMLVLAGIGSVLAPWLIRLAYGPKFDSVTPSFIILMFECVLSGAAWTLAQRFNAGGKP 356 + ML++ + +++ L YGP F + +F +L EC++ G +W LA FNA G+P Sbjct: 308 MAAMLIVIVPALFIGRYMLGLLYGPAFLEASLTFYLLSLECIIGGGSWILASAFNALGRP 367 Query: 357 GLILRRHVLSLIPLV----LMLPFLPKENIAVYLALLMLLGAVLRMIITLAMYPYVLKQP 412 GL+L R +++ V + P + IA+ L L+GA +R+ +L +P P Sbjct: 368 GLVLFRQIVAYAITVGLFFICTPIFGLDGIAIAL----LVGACVRLAFSLFSFPMFFNVP 423 Query: 413 VPRLVPTLAEIRKLVGMIKARWERRRLGGNESA 445 + R++ ++I ++ I+ + + L E A Sbjct: 424 LSRIIFDKSDITFVLQTIQKKRRKGELKDAEFA 456 >ref|YP_003869515.1| membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] gb|ADM68977.1| Membrane protein involved in the export of O-antigen and teichoic acid [Paenibacillus polymyxa E681] Length = 459 Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 101/433 (23%), Positives = 181/433 (41%), Gaps = 41/433 (9%) Query: 4 KEIVKSSGRTLLTTVGVTVLGFAISVLTTRMLGPEGRGLLSGSLLIIGLSTALGRWD--L 61 K+ ++ +T++ ++ + V+ VLT R LGP GRG TA+ W L Sbjct: 25 KDNSSAAVKTMIFSMLILVVNMLTGVLTARFLGPTGRGE----------QTAMVNWSQFL 74 Query: 62 AYSYIYFRGTGLYFRQRRFVYLSALVIGVGTLLLAAVGVLINDNTI------LHKHIGLI 115 A+ + + L + +R + + G+ LL G L + L + Sbjct: 75 AFCMSFGVPSALIYNAKRKPEETGKLYGLALLLATMFGGLATLVGVFLIPYWLRSFSSSV 134 Query: 116 TAFAVVTGLQNYLFNLSQLETSLAFL-------NLTRISGAIFNLAALGVLYWLCRPVQF 168 FA + + L +SQ+ +L + NL R + L L +L + Sbjct: 135 ILFAQCSMMMCPLIAISQINNALLQVRSEYKQYNLFRYLVPLSTLLGLAILILTGNMNPY 194 Query: 169 EYILIGQMVCALVLIAMCLQWCRLYLFSARPAPAELASLPRARTSDMVKYALNQHGTGLV 228 L + + I + ++ RLY + + + +L Y + +G L+ Sbjct: 195 TSALAYLLPGLPIYIGVTIRMIRLYKPKVKNSWTQFKNL--------FTYGMGSYGNDLM 246 Query: 229 ALAMTYFDKVYLLKVGTIEEFGYYTLAFTTSRLIGAIHEAMNTALYSRYAGKEEGEMNSS 288 TY D++ + + + G Y +A + +R++ ++ L+ + +G + E + Sbjct: 247 GQVSTYIDQILIAGLLRPADLGLYAVAVSLARMVNVFSTSIIVVLFPKASGLNKEEAVAI 306 Query: 289 INTAFRFTLVPMLVLAGIGSVLAPWLIRLAYGPKFDSVTPSFIILMFECVLSGAAWTLAQ 348 AFR T + A + ++AP++ L YG +F F L+ E +SG LAQ Sbjct: 307 TFRAFRVTSTATFLAAVMLMLIAPFVFTLLYGQEFKQALTVFRFLVLEVAISGGTMVLAQ 366 Query: 349 RFNAGGKPGLILRRHVLSLIPLVLMLPFL----PKENIAVYLALLMLLGAVLRMIITLAM 404 +F A GKP L+ +L + L L++P L PK + + ML +LR I L Sbjct: 367 QFMALGKPKLVT---ILQGVGLALVIPLLSILVPKYGLT-GAGIAMLSSGILRFIFILCN 422 Query: 405 YPYVLKQPVPRLV 417 +VLK +PRL+ Sbjct: 423 VKFVLKMKIPRLL 435 >emb|CCC84036.1| putative O-antigen transporter [Paenibacillus polymyxa M1] Length = 459 Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 99/429 (23%), Positives = 178/429 (41%), Gaps = 33/429 (7%) Query: 4 KEIVKSSGRTLLTTVGVTVLGFAISVLTTRMLGPEGRGLLSGSLLIIGLSTALGRWD--L 61 K+ ++ +T++ ++ + V+ VLT R LGP GRG TA+ W L Sbjct: 25 KDNSSAAVKTMIFSMLILVVNMLTGVLTARFLGPTGRGE----------QTAMVNWSQFL 74 Query: 62 AYSYIYFRGTGLYFRQRRFVYLSALVIGVGTLLLAAVG---VLINDNTI---LHKHIGLI 115 A+ + + L + +R + + G+ LL G LI I L + Sbjct: 75 AFCMSFGVPSALIYNAKRKPEETGKLYGLALLLATVFGGMATLIGVFLIPYWLRSFSSSV 134 Query: 116 TAFAVVTGLQNYLFNLSQLETSLAFL-------NLTRISGAIFNLAALGVLYWLCRPVQF 168 FA + + L +SQ+ +L + NL R + L L +L + Sbjct: 135 ILFAQCSMMMCPLIAISQINNALLQVRSEYKQYNLFRYLVPLSTLLGLAILILTGTMNPY 194 Query: 169 EYILIGQMVCALVLIAMCLQWCRLYLFSARPAPAELASLPRARTSDMVKYALNQHGTGLV 228 L + + I + ++ RLY + + + +L Y + +G L+ Sbjct: 195 TSALAYLLPGLPIYIGVTIRMIRLYKPKVKNSWTQFKNL--------FTYGMGSYGNDLM 246 Query: 229 ALAMTYFDKVYLLKVGTIEEFGYYTLAFTTSRLIGAIHEAMNTALYSRYAGKEEGEMNSS 288 TY D++ + + + G Y +A + +R++ ++ L+ + +G ++ E + Sbjct: 247 GQVSTYIDQILIAGLLRPADLGLYAVAVSLARMVNVFSTSIIVVLFPKASGLDKEEAVAI 306 Query: 289 INTAFRFTLVPMLVLAGIGSVLAPWLIRLAYGPKFDSVTPSFIILMFECVLSGAAWTLAQ 348 AFR T + A + ++AP++ L YG +F F L+ E +SG LAQ Sbjct: 307 TFRAFRVTSTATFLAAVMLMLVAPFVFTLLYGQEFKQALTVFRFLVLEVAISGGTMVLAQ 366 Query: 349 RFNAGGKPGLILRRHVLSLIPLVLMLPFLPKENIAVYLALLMLLGAVLRMIITLAMYPYV 408 +F A GKP L+ + L ++ +L L + ML +LR + L +V Sbjct: 367 QFMALGKPKLVTILQGVGLALVIPLLSILVPRYGLTGAGIAMLSSGILRFVFILCNVKFV 426 Query: 409 LKQPVPRLV 417 LK +PRLV Sbjct: 427 LKMKIPRLV 435 >ref|YP_003945429.1| polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] gb|ADO55188.1| Polysaccharide biosynthesis protein [Paenibacillus polymyxa SC2] Length = 442 Score = 84.0 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 99/429 (23%), Positives = 178/429 (41%), Gaps = 33/429 (7%) Query: 4 KEIVKSSGRTLLTTVGVTVLGFAISVLTTRMLGPEGRGLLSGSLLIIGLSTALGRWD--L 61 K+ ++ +T++ ++ + V+ VLT R LGP GRG TA+ W L Sbjct: 8 KDNSSAAVKTMIFSMLILVVNMLTGVLTARFLGPTGRGE----------QTAMVNWSQFL 57 Query: 62 AYSYIYFRGTGLYFRQRRFVYLSALVIGVGTLLLAAVG---VLINDNTI---LHKHIGLI 115 A+ + + L + +R + + G+ LL G LI I L + Sbjct: 58 AFCMSFGVPSALIYNAKRKPEETGKLYGLALLLATVFGGMATLIGVFLIPYWLRSFSSSV 117 Query: 116 TAFAVVTGLQNYLFNLSQLETSLAFL-------NLTRISGAIFNLAALGVLYWLCRPVQF 168 FA + + L +SQ+ +L + NL R + L L +L + Sbjct: 118 ILFAQCSMMMCPLIAISQINNALLQVRSEYKQYNLFRYLVPLSTLLGLAILILTGTMNPY 177 Query: 169 EYILIGQMVCALVLIAMCLQWCRLYLFSARPAPAELASLPRARTSDMVKYALNQHGTGLV 228 L + + I + ++ RLY + + + +L Y + +G L+ Sbjct: 178 TSALAYLLPGLPIYIGVTIRMIRLYKPKVKNSWTQFKNL--------FTYGMGSYGNDLM 229 Query: 229 ALAMTYFDKVYLLKVGTIEEFGYYTLAFTTSRLIGAIHEAMNTALYSRYAGKEEGEMNSS 288 TY D++ + + + G Y +A + +R++ ++ L+ + +G ++ E + Sbjct: 230 GQVSTYIDQILIAGLLRPADLGLYAVAVSLARMVNVFSTSIIVVLFPKASGLDKEEAVAI 289 Query: 289 INTAFRFTLVPMLVLAGIGSVLAPWLIRLAYGPKFDSVTPSFIILMFECVLSGAAWTLAQ 348 AFR T + A + ++AP++ L YG +F F L+ E +SG LAQ Sbjct: 290 TFRAFRVTSTATFLAAVMLMLVAPFVFTLLYGQEFKQALTVFRFLVLEVAISGGTMVLAQ 349 Query: 349 RFNAGGKPGLILRRHVLSLIPLVLMLPFLPKENIAVYLALLMLLGAVLRMIITLAMYPYV 408 +F A GKP L+ + L ++ +L L + ML +LR + L +V Sbjct: 350 QFMALGKPKLVTILQGVGLALVIPLLSILVPRYGLTGAGIAMLSSGILRFVFILCNVKFV 409 Query: 409 LKQPVPRLV 417 LK +PRLV Sbjct: 410 LKMKIPRLV 418