BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1245.p (469 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775407.1| hypothetical protein Hsero_1998 [Herbaspiril... 583 e-164 ref|YP_001352329.1| hypothetical protein mma_0639 [Janthinobacte... 451 e-124 ref|YP_001099042.1| hypothetical protein HEAR0721 [Herminiimonas... 449 e-124 ref|YP_003675198.1| hypothetical protein M301_2256 [Methylotener... 429 e-118 ref|XP_002669162.1| predicted protein [Naegleria gruberi] >gi|28... 400 e-109 >ref|YP_003775407.1| hypothetical protein Hsero_1998 [Herbaspirillum seropedicae SmR1] gb|ADJ63499.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 470 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 311/471 (66%), Positives = 360/471 (76%), Gaps = 3/471 (0%) Query: 1 MLMQRKFSKLRQAQLCLALGCTALASAPAWAQEWGSYLKPFAADSLWNSRPVNPTFSNDV 60 M+MQ + R + LG A+ PA A +WG+Y KPFAADSLWNSRPVNP+F+ DV Sbjct: 1 MMMQVRTRPPRLLPMLAMLG-ALYAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDV 59 Query: 61 IPTSTYSPLITNSDYSTGVFLASPNDPAVTVTGPTGSNSLKIADEEVFRDITIPHWPAAT 120 IPTSTY P I YSTGVFLASP DP VTVTG GS L I DEE + DITIPHWPA+ Sbjct: 60 IPTSTYFPAINAGAYSTGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASV 119 Query: 121 KPGPGGDAHADIADPSTGIIHSFWGLKQQDGKWTARLYAWTKMNGTGWPDPAHYYQGARA 180 KP G D HADI DP+T IIHSFW LKQ +WTA Y+WTK++G GWPDPAHYYQGARA Sbjct: 120 KPASGSDGHADIVDPTTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARA 179 Query: 181 AGVPASAGLIRIHEAAAKPEYYPHALAMTMTYNGLSAKPTYVFPATSADVNAAKVNSGPF 240 GVPAS GLIR HE KP YYPHALAM++T+NGLSA PTYVFPATSAD NAAK+NSG F Sbjct: 180 TGVPASGGLIRTHEVEQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAF 239 Query: 241 PEGALMMLPPSFDTSKITNEEVRRIAETLKRYGAYVIDANDGTPFAIFAEIGSSANPSPG 300 PEGAL+MLPP FDTSK+T+ E+RR+AETLKRYGAY++DAN GTPFAI+ EIG+S N P Sbjct: 240 PEGALVMLPPDFDTSKLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPN 299 Query: 301 GWNATVSNELQTIRAALRRVTGASGWIDGNGKTFTPNQNLNLLSMRGAWTLQAGSGQATF 360 GWN T ++ELQ IRAALRRVTGASGW+DGNG +FTPNQNLN+LSMRG WT Q+GS + Sbjct: 300 GWNNTAASELQVIRAALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKY 359 Query: 361 DSWQQSVVISGASASTIAVNYSNRGMQPVDWAKPVMGAKYKLTARATGGGKLRLTIYDKL 420 SW Q+VV +S+ + VNY+NRG+ ++WAKPV G YKLTAR TGGGKLRL + D+ Sbjct: 360 SSWDQAVVFPASSSVSEVVNYANRGIAGINWAKPVTGRNYKLTARTTGGGKLRLLVQDQA 419 Query: 421 VGKVVTDSGYLANGQSTTFVWNANTPQLIIYAQSGGAS--STVGAELIKAE 469 GK DSGYL NGQS TF W A P L +YA+SGG+ STVGAELI A+ Sbjct: 420 TGKAAFDSGYLDNGQSKTFTWTATKPALAVYARSGGSGQPSTVGAELISAD 470 >ref|YP_001352329.1| hypothetical protein mma_0639 [Janthinobacterium sp. Marseille] gb|ABR90844.1| Hypothetical protein mma_0639 [Janthinobacterium sp. Marseille] Length = 471 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 242/456 (53%), Positives = 301/456 (66%), Gaps = 1/456 (0%) Query: 15 LCLALGCTALASAPAWAQEWGSYLKPFAADSLWNSRPVNPTFSNDVIPTSTYSPLITNSD 74 LC AL + A+ A WGSY KPFAA+S WNSRP+ P F + VIP S+YSP + + Sbjct: 16 LCGALLMASTATHAADKAGWGSYRKPFAANSPWNSRPLQPVFGDFVIPKSSYSPGVAGGE 75 Query: 75 YSTGVFLASPNDPAVTVTGPTGSNSLKIADEEVFRDITIPHWPAATKPGPGGDAHADIAD 134 +STGVFLA+ D VTV G + L D F D+TIP WP+ D HADI D Sbjct: 76 WSTGVFLANAGDQPVTVGGLPKTQGLWDPDASAFHDVTIPRWPSDVVAASASDGHADIVD 135 Query: 135 PSTGIIHSFWGLKQQDGKWTARLYAWTKMNGTGWPDPAHYYQGARAAGVPASAGLIRIHE 194 P TGI+HSFW LK+ DGKW A YAWTK+NG GW DPAHY+QGARAAGV + GLIR HE Sbjct: 136 PVTGIVHSFWQLKKLDGKWVAAQYAWTKLNGRGWGDPAHYFQGARAAGVATAGGLIRKHE 195 Query: 195 AAAKPEYYPHALAMTMTYNGLSAKPTYVFPATSADVNAAKVNSGPFPEGALMMLPPSFDT 254 Y HALAM++T++GLS++PTYVFPATSAD +AA N+G PEGAL+MLPPS+DT Sbjct: 196 VNDGDVMYRHALAMSLTFDGLSSQPTYVFPATSADTDAATRNTGKIPEGALLMLPPSYDT 255 Query: 255 SKITNEEVRRIAETLKRYGAYVIDANDGTPFAIFAEIGSSANPSPGGWNATVSNELQTIR 314 SKI + E+R++AETLK YGAYV+D N GTPF I+ E G+ + GGWN V+N+L+ +R Sbjct: 256 SKIASPELRKVAETLKTYGAYVVDRNFGTPFFIYVENGAGFDLHKGGWNNEVANDLERMR 315 Query: 315 AALRRVTGASGWIDGNGKTFTPNQNLNLLSMRGAWTLQAGSGQATFDSWQQSVVISGASA 374 ALR V A GW+DGNGK T + +NLLSMRG W LQ+G FD W+Q+VV Sbjct: 316 VALRPVVSAQGWLDGNGKPVTLQKKMNLLSMRGPWQLQSGGTLGNFDIWKQAVVFPAGEQ 375 Query: 375 STIAVNYSNRGMQPVDWAKPVMGAKYKLTARATGGGKLRLTIYDKLVGKVVTDSGYLANG 434 + VNYS+RG+ PV WA P G Y++TAR TGG KLRL + D + DSG L G Sbjct: 376 AVTQVNYSSRGLHPVSWALPQAGKNYRVTARTTGGAKLRLQVRDPSGNPLYFDSGELQQG 435 Query: 435 QSTTFVWNANTPQLIIYAQSG-GASSTVGAELIKAE 469 +S TF W + +YA SG G STV EL++ + Sbjct: 436 ESKTFAWPDPRAIVTVYATSGVGTVSTVSGELLEQD 471 >ref|YP_001099042.1| hypothetical protein HEAR0721 [Herminiimonas arsenicoxydans] emb|CAL60915.1| hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 476 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 236/440 (53%), Positives = 293/440 (66%), Gaps = 1/440 (0%) Query: 31 AQEWGSYLKPFAADSLWNSRPVNPTFSNDVIPTSTYSPLITNSDYSTGVFLASPNDPAVT 90 A +WG+Y KPFAA S WNSRPV P F + VIP STY P + +STGVFLA D VT Sbjct: 37 AAQWGTYGKPFAATSPWNSRPVAPVFDDFVIPASTYKPGVAGGVWSTGVFLAHAGDAPVT 96 Query: 91 VTGPTGSNSLKIADEEVFRDITIPHWPAATKPGPGGDAHADIADPSTGIIHSFWGLKQQD 150 VTG + L D E F D+T+P WPA D HADI DP TGI+HSFW LK+ D Sbjct: 97 VTGLPKTQGLWDPDAEAFHDVTVPRWPADVVAASASDGHADIVDPVTGIVHSFWQLKKVD 156 Query: 151 GKWTARLYAWTKMNGTGWPDPAHYYQGARAAGVPASAGLIRIHEAAAKPEYYPHALAMTM 210 GKW A YAWT+++G GW DPA Y+QGARAAGVP +AGLIR HE Y HALAM++ Sbjct: 157 GKWVAAQYAWTRLDGRGWGDPAQYFQGARAAGVPTAAGLIRKHEINDGDTMYRHALAMSL 216 Query: 211 TYNGLSAKPTYVFPATSADVNAAKVNSGPFPEGALMMLPPSFDTSKITNEEVRRIAETLK 270 TYN LS PTY+FPATSAD +AAK N+G PEGALMMLP S+DT KI+N ++R++AETLK Sbjct: 217 TYNALSPNPTYIFPATSADTDAAKTNTGRIPEGALMMLPASYDTQKISNPDLRKVAETLK 276 Query: 271 RYGAYVIDANDGTPFAIFAEIGSSANPSPGGWNATVSNELQTIRAALRRVTGASGWIDGN 330 YGAYV+D N GTPF I+ E G+ + GGWN TV+++L+ +R ALR+VT GW+DG Sbjct: 277 TYGAYVVDRNFGTPFFIYVENGAGFDLHKGGWNNTVADDLERMRVALRQVTAVQGWLDGI 336 Query: 331 GKTFTPNQNLNLLSMRGAWTLQAGSGQATFDSWQQSVVISGASASTIAVNYSNRGMQPVD 390 GK + +NLLSMRG W LQ GS TFD+WQQ+VV NYS+RG+ P+ Sbjct: 337 GKQVVLQEKMNLLSMRGPWHLQTGSTAGTFDTWQQAVVFPATGTRIAQGNYSSRGLHPLS 396 Query: 391 WAKPVMGAKYKLTARATGGGKLRLTIYDKLVGKVVTDSGYLANGQSTTFVWNANTPQLII 450 WA +G Y+LTA+ TG KLRL + + V DSG L NG+S +F W + T + + Sbjct: 397 WAAAEVGKTYRLTAKTTGDAKLRLQVREPSGTSVYFDSGELGNGESKSFSWPSKTAIVYV 456 Query: 451 YAQSG-GASSTVGAELIKAE 469 YA SG G STV EL++ + Sbjct: 457 YAISGVGGPSTVRGELLQQD 476 >ref|YP_003675198.1| hypothetical protein M301_2256 [Methylotenera versatilis 301] gb|ADI30621.1| conserved hypothetical protein [Methylotenera versatilis 301] Length = 477 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 221/427 (51%), Positives = 276/427 (64%), Gaps = 1/427 (0%) Query: 27 APAWAQEWGSYLKPFAADSLWNSRPVNPTFSNDVIPTSTYSPLITNSDYSTGVFLASPND 86 + A ++G Y +PF+ADSLWNSRPV P+F++D IP S Y P + ++STG FLA P D Sbjct: 32 SSAVINKFGRYEQPFSADSLWNSRPVEPSFASDEIPKSLYFPAVQEGEFSTGFFLAKPTD 91 Query: 87 PAVTVTGPTGSNSLKIADEEVFR-DITIPHWPAATKPGPGGDAHADIADPSTGIIHSFWG 145 P + + G TG L D E FR DITIPHWP+ P GGD HAD+ DP +IHSF+ Sbjct: 92 PPMVIKGRTGKAGLWDVDAESFRSDITIPHWPSNVVPAAGGDGHADVVDPVNRVIHSFYQ 151 Query: 146 LKQQDGKWTARLYAWTKMNGTGWPDPAHYYQGARAAGVPASAGLIRIHEAAAKPEYYPHA 205 LK G+WTA YAWT +NG GW +PAHY+QGARA GVPA AG+IR HE Y HA Sbjct: 152 LKSIGGQWTATQYAWTPLNGRGWGNPAHYFQGARATGVPAGAGVIRKHEVNDGDTMYRHA 211 Query: 206 LAMTMTYNGLSAKPTYVFPATSADVNAAKVNSGPFPEGALMMLPPSFDTSKITNEEVRRI 265 LAM++T NGL+A P Y++PATSAD AAK N G PEGAL+MLP +F+ K+ E+++I Sbjct: 212 LAMSLTNNGLAANPAYIYPATSADGFAAKDNYGKVPEGALLMLPSTFNLDKLKTPELKKI 271 Query: 266 AETLKRYGAYVIDANDGTPFAIFAEIGSSANPSPGGWNATVSNELQTIRAALRRVTGASG 325 A TLK YGAYV+DAN GTPF I+ E GS N WN EL IR +LR+V A G Sbjct: 272 AATLKTYGAYVVDANYGTPFVIYVENGSGFNLHKAVWNNIAKVELDMIRQSLRQVISAKG 331 Query: 326 WIDGNGKTFTPNQNLNLLSMRGAWTLQAGSGQATFDSWQQSVVISGASASTIAVNYSNRG 385 W+DGN K F P +N NLLSMRG W L++ FD+ QQ+VV + +AS I VN S RG Sbjct: 332 WVDGNSKAFIPPKNFNLLSMRGQWQLKSEGPMGVFDTLQQAVVFNKTNASVIQVNSSGRG 391 Query: 386 MQPVDWAKPVMGAKYKLTARATGGGKLRLTIYDKLVGKVVTDSGYLANGQSTTFVWNANT 445 + WA P G Y L A +GGGKLR I+DK + K+ DS L++GQ TF W + Sbjct: 392 LSHTSWALPQQGKSYSLRAVTSGGGKLRFQIFDKTLKKLTFDSNELSDGQIITFEWPSQD 451 Query: 446 PQLIIYA 452 Q I+ A Sbjct: 452 FQPIVTA 458 >ref|XP_002669162.1| predicted protein [Naegleria gruberi] gb|EFC36418.1| predicted protein [Naegleria gruberi] Length = 462 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 231/460 (50%), Positives = 296/460 (64%), Gaps = 7/460 (1%) Query: 14 QLCLALGCTALASAPAWAQEWGSYLKPFAADSLWNSRPVNPTFSNDVIPTSTYSPLITNS 73 ++ LA+ LA+A A +WG+ KPF+ +SLWNSRPVNP S +PTS Y P I Sbjct: 3 KVILAITLCYLAAASYVAAQWGTVNKPFSVNSLWNSRPVNPILSGVTVPTSIYFPAIQAG 62 Query: 74 DYSTGVFLASPNDPAVTVTGPTGSNSLKIAD-EEVFRDITIPHWPAATKPGPGGDAHADI 132 YSTGVF+AS D +T+ GP+ + ++ D + IP WPA T P G D H +I Sbjct: 63 AYSTGVFIASATDQPMTIYGPSATVGIQNVDIGGSVTSMVIPRWPANTVPATGSDGHCEI 122 Query: 133 ADPSTGIIHSFWGLKQQDGKWTARLYAWTKMNGTGWPDPAHYYQGARAAGVPASAGLIRI 192 DP +IHSFW LK G W A LY W ++GTGW DPAHYYQGARA G+ +SAG+IR Sbjct: 123 FDPIAKVIHSFWQLKNVTGVWRATLYGWAALDGTGWGDPAHYYQGARAVGIVSSAGIIRK 182 Query: 193 HEAAAKPEYYPHALAMTMTYNGLS-AKPTYVFPATSADVNAAKVNSGPFPEGALMMLPPS 251 HE Y HALA+++TYN L+ TYVFPATSAD +AA NSG PEG+L+MLP S Sbjct: 183 HEVDDGDIMYRHALALSLTYNALANGSNTYVFPATSADSDAATTNSGAIPEGSLLMLPSS 242 Query: 252 FDTSKITNEEVRRIAETLKRYGAYVIDANDGTPFAIFAEIGS--SANPSPGGWNATVSNE 309 F+ SK+T +++R++AETLK YGA V+D N GTP+AI+ EIG+ S +P PGGW+ T ++E Sbjct: 243 FNVSKLTTQKLRKVAETLKTYGARVVDRNYGTPYAIYVEIGANYSLHP-PGGWSNTAASE 301 Query: 310 LQTIRAALRRVTGASGWIDGNGKTFTPNQNLNLLSMRGAWTLQAGSGQATFDSWQQSVVI 369 LQTIRAALR + AS W++G+G+ T QN NLLSMRG WTLQ+G FD+++Q+VV Sbjct: 302 LQTIRAALRPLVSASSWLNGDGQPVTFTQNQNLLSMRGPWTLQSGDALGVFDTYKQAVVF 361 Query: 370 SGASASTIAVNYSNRGMQPVDWAKPVMGAKYKLTARATGGGKLRLTI-YDKLVGKVVTDS 428 SA N + G + WAKP+ G Y LTA TGGG+LRL+ D V +S Sbjct: 362 PSKSARVTQTNSNGTGFAKLKWAKPIAGQSYNLTAITTGGGQLRLSFNLDCNNSTKVINS 421 Query: 429 GYLANGQSTTFVWNANTPQLIIYAQSG-GASSTVGAELIK 467 G L NGQS F W A+ +YA SG +STV A LIK Sbjct: 422 GALNNGQSFVFTWPASNCWHTLYAISGLNQASTVSASLIK 461