BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1244.p (471 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775403.1| cholera toxin secretion EpsM protein [Herbas... 509 e-142 ref|YP_001352327.1| hypothetical protein mma_0637 [Janthinobacte... 363 3e-98 ref|ZP_08274206.1| hypothetical protein IMCC9480_2606 [Oxalobact... 342 1e-91 ref|YP_001099040.1| hypothetical protein HEAR0719 [Herminiimonas... 328 1e-87 ref|YP_004040223.1| o-antigen polymerase [Methylovorus sp. MP688... 307 3e-81 >ref|YP_003775403.1| cholera toxin secretion EpsM protein [Herbaspirillum seropedicae SmR1] gb|ADJ63495.1| cholera toxin secretion EpsM protein [Herbaspirillum seropedicae SmR1] Length = 478 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 301/465 (64%), Positives = 369/465 (79%), Gaps = 5/465 (1%) Query: 1 MRKINLDLTQLLILAAGVMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKR 60 M++ +LD +Q L+LAA V+V++LVGM LPVA LLGDSVGRLAA+PALF+LG +F+FN++ Sbjct: 1 MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60 Query: 61 LLLLLILLLRASGDVVLESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAV 120 LLLLLI L RASGD+VLESTR+G GG GLG AIN LIILIA LF +E+P+ LPR AV Sbjct: 61 LLLLLIFLFRASGDIVLESTRVG---GGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAV 117 Query: 121 AWLIFLAWEAVCVVVSPNAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSS 180 WL+ LA + V++SP+ +K LSLCSYFAVFVCAFY+VRT +DFR MV+LMI SS Sbjct: 118 PWLVLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASS 177 Query: 181 VIPAIYGLVSVAMAG-GVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQ 239 ++PA+YG+V+ + G G FRLQSTF HPNILAFYLTL+ISLGLYVLKSP F+L+Q + Sbjct: 178 IVPALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFK 237 Query: 240 RFAFTGYLGVLMVLLLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQ 299 RFA GY+ +L VLLLLTQTRSAW A +L +LYGLMFERRYLIYL +L L++L+PSVQ Sbjct: 238 RFALMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQ 297 Query: 300 QRIMDLDGGGTVVGNYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPL 359 +R+M LD G TV YAKLNSFAWRV LWES L WMSPS YLTGYGVE+F YYS FFPL Sbjct: 298 ERVMQLDSGNTV-QTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPL 356 Query: 360 SGNFEWKAHNVFVQLIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYL 419 +G +W AH+VFVQ FD G+IG++AYL +FY R L++LY DRLGA ILIC LV+YL Sbjct: 357 AGTTKWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYL 416 Query: 420 VVSASDNMLSYLAFNWYFWMAMGMGWSLYLNGQPADKERAGQASR 464 VVSASDN+LSYLAFNWYFW+ +GMG S+Y+N + +E + +R Sbjct: 417 VVSASDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKAR 461 >ref|YP_001352327.1| hypothetical protein mma_0637 [Janthinobacterium sp. Marseille] gb|ABR91275.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 471 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 226/434 (52%), Positives = 295/434 (67%), Gaps = 3/434 (0%) Query: 16 AGVMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKRLLLLLILLLRASGDV 75 A +++A+L G+++P A ++ + RLAA+PA + G + VFN+ LLL LI++ R+ GDV Sbjct: 15 AVIVLALLAGVLVPFYAEVMDYKLARLAALPAFLVFGMLLVFNRMLLLTLIIVFRSVGDV 74 Query: 76 VLESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAVAWLIFLAWEAVCVVV 135 VLESTR GG GLGG IN +IL+A + +ERP+ LP+K +AWL FL V + Sbjct: 75 VLESTRFSIGGYTTGLGGVINLCVILLACMLVMERPQQLPKKMTLAWLPFLLAALFGVAI 134 Query: 136 SPNAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSSVIPAIYGLVSVAM-- 193 SP ++T L+L SYFA+FV AFY VR+ DFR+ VRL++ SS++PA+Y LV VA+ Sbjct: 135 SPEKGDAIRTYLTLLSYFAMFVSAFYFVRSAQDFRYCVRLVLWSSLLPALYALVDVALRG 194 Query: 194 AGGVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQRFAFTGYLGVLMVL 253 GG GFRLQSTFTHPNI AFYLTL+I L L+ LK +LS R A T Y L+ L Sbjct: 195 GGGGPEGFRLQSTFTHPNIFAFYLTLVIPLTLFTLKDKATQLSGGMRVALTLYFFYLLAL 254 Query: 254 LLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQQRIMDLDGGGTVVG 313 L+LTQTRSAW A L +F+ Y L+FERRYL+YL++L ++LL+P ++ R++DL G VG Sbjct: 255 LVLTQTRSAWIACLFVFIGYALLFERRYLLYLMLLPVVALLVPEIRDRLLDLGSGTEAVG 314 Query: 314 NYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPLSGNFEWKAHNVFVQ 373 YAKLNSFAWR+ +WES L WM PS YL GYGVEAF ++S FFP + W AHNV+VQ Sbjct: 315 -YAKLNSFAWRLSIWESGLQWMRPSHYLYGYGVEAFRHFSQTFFPAANKMNWGAHNVYVQ 373 Query: 374 LIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYLVVSASDNMLSYLAF 433 FD GVIGL AYL L+ + L L D+L A I I ++ YLVVS+SDNM YL F Sbjct: 374 WFFDAGVIGLCAYLFLYARMVLTLKSLLRVDKLAAFITISIVLVYLVVSSSDNMFGYLVF 433 Query: 434 NWYFWMAMGMGWSL 447 NWYFW +G +L Sbjct: 434 NWYFWFVIGAACAL 447 >ref|ZP_08274206.1| hypothetical protein IMCC9480_2606 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32315.1| hypothetical protein IMCC9480_2606 [Oxalobacteraceae bacterium IMCC9480] Length = 472 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 210/446 (47%), Positives = 296/446 (66%), Gaps = 5/446 (1%) Query: 2 RKINLDLTQLLILAAGVMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKRL 61 R N+++ I+A ++A+L+G +P+ L+G V L P L L F+++L Sbjct: 16 RITNINVVGAFIVA---LMALLIGAAMPIYVGLMGSKVTNLLIPPILLLFVIFLAFDRKL 72 Query: 62 LLLLILLLRASGDVVLESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAVA 121 ++L I+L R+ GDV+L ST+ GG G+G IN ++++IALL +E+P+L P+K A+ Sbjct: 73 IILAIILFRSVGDVLLNSTKTSIGGMSIGIGALINIVVLMIALLLVLEKPKLFPKKLALF 132 Query: 122 WLIFLAWEAVCVVVSPNAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSSV 181 WL F+A VV SP ++T L+L SYFA+F+ A Y+VRT DF +RL++ SSV Sbjct: 133 WLPFMAIALFGVVQSPEKVDAIRTYLTLISYFAIFIIAVYLVRTPADFNKSIRLVVWSSV 192 Query: 182 IPAIYGLVSVAMAGGVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQRF 241 IP IYG+V A+ G FRLQ TF+HPNI AFYL L+ISL LY++K+ L RF Sbjct: 193 IPVIYGIVD-AVLHMRGGSFRLQGTFSHPNIFAFYLVLVISLSLYLIKTKIAPLKNFGRF 251 Query: 242 AFTGYLGVLMVLLLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQQR 301 + + V++V LLLTQTRSAW A ++F+ Y ++FER+YLIYL +L + LLIPSV+ R Sbjct: 252 CVSFNMLVMLVQLLLTQTRSAWVACFLIFLFYAIIFERKYLIYLSLLPVVVLLIPSVRDR 311 Query: 302 IMDLDGGGTVVGNYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPLSG 361 + +LD V YA+LNSF+WRV LWESAL WM ++Y+ GYG++AF ++S FF +G Sbjct: 312 LANLDSSNEVY-QYAELNSFSWRVSLWESALRWMEAAKYIAGYGLDAFPFHSRTFFLKAG 370 Query: 362 NFEWKAHNVFVQLIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYLVV 421 W AHNV++QLIF+ G+IGL+++L LF R L L+ + LG IL+ + +YLVV Sbjct: 371 AINWGAHNVYIQLIFETGLIGLLSFLALFVNVARHLRGLFKIEPLGFFILLSLISEYLVV 430 Query: 422 SASDNMLSYLAFNWYFWMAMGMGWSL 447 SASDN L+YL FNWYFW A+G G SL Sbjct: 431 SASDNTLAYLVFNWYFWFAIGAGCSL 456 >ref|YP_001099040.1| hypothetical protein HEAR0719 [Herminiimonas arsenicoxydans] emb|CAL60913.1| putative exopolysaccharide biosynthesis protein EpsM-like [Herminiimonas arsenicoxydans] Length = 491 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 215/454 (47%), Positives = 300/454 (66%), Gaps = 7/454 (1%) Query: 18 VMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKRLLLLLILLLRASGDVVL 77 V +A+ +G+++P A L+ RL A+PA+ + G + +FN+ LLL LI++ R++GDV+L Sbjct: 36 VALALAIGVIVPFYAELMDYKPARLLALPAVLVFGLLLLFNRMLLLALIIVFRSAGDVIL 95 Query: 78 ESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAVAWLIFLAWEAVCVVVSP 137 +STR GG G+GG IN +I++A + E+P LP+K +AWL FL +++SP Sbjct: 96 DSTRFSIGGYETGIGGLINLCVIMLACMLVFEKPSRLPKKMTLAWLPFLLVALFGLMISP 155 Query: 138 NAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSSVIPAIYGLVSVAM---- 193 +++ L+L SYF++F+ AFY VR+ DFR V+L++ SS +PA Y LV +A+ Sbjct: 156 EKGDAIRSYLTLLSYFSMFIIAFYFVRSAQDFRRCVKLVLWSSTLPAAYALVDIALHGAA 215 Query: 194 --AGGVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQRFAFTGYLGVLM 251 G + GFRLQSTFTHPNI AFYLTLII L LYVLK T Q R A T YL L+ Sbjct: 216 GGMAGGAEGFRLQSTFTHPNIFAFYLTLIIPLTLYVLKDKTVVPGQGSRIALTLYLFYLL 275 Query: 252 VLLLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQQRIMDLDGGGTV 311 LL+LTQTRSAW A ++ F Y L+FERRYL+YL++L ++LL+P +++R++DL G T Sbjct: 276 ALLVLTQTRSAWLACMISFFAYALLFERRYLLYLMLLPVVALLVPEIRERLLDLGSGTTA 335 Query: 312 VGNYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPLSGNFEWKAHNVF 371 V YAKLNSFAWR+ +WES L WM PS YL GYG+EAF +YS FFP + + W AHNV+ Sbjct: 336 VA-YAKLNSFAWRLSIWESGLQWMRPSHYLFGYGLEAFRHYSQTFFPAANHMNWGAHNVY 394 Query: 372 VQLIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYLVVSASDNMLSYL 431 VQ FD G++GL+AYL L+ + L L DRL A + + + YL+VS+SDN+ YL Sbjct: 395 VQWFFDAGMVGLLAYLWLYARVALMLKSLMRIDRLAAFVTLALVFSYLIVSSSDNIFGYL 454 Query: 432 AFNWYFWMAMGMGWSLYLNGQPADKERAGQASRL 465 FNWYFW ++G+G +L + D + QA L Sbjct: 455 VFNWYFWFSVGIGCALAASVALPDNKAGRQARPL 488 >ref|YP_004040223.1| o-antigen polymerase [Methylovorus sp. MP688] gb|ADQ84987.1| O-antigen polymerase [Methylovorus sp. MP688] Length = 465 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 200/433 (46%), Positives = 270/433 (62%), Gaps = 13/433 (3%) Query: 11 LLILAAGVMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKRLLLLLILLLR 70 LLIL AG + V + G+ L AVPA LLG +FV +K LLLLLIL+ R Sbjct: 23 LLILIAGAFSSAFVDIA--------GNKYALLLAVPAAILLGILFVVDKYLLLLLILIFR 74 Query: 71 ASGDVVLESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAVAWLIFLAWEA 130 + D +L++T++G GLG +NAL+++I L + + V WL FL Sbjct: 75 SGLDAILDNTKLGP----FGLGAVLNALVLIIGLFAMYRMEKSQRKLVVVVWLPFLIMYG 130 Query: 131 VCVVVSPNAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSSVIPAIYGLVS 190 + VV +P + +K LSL S AVF Y+V+T DF +++++ SS+IP YGL+S Sbjct: 131 IGVVKAPEIFLSVKLYLSLISTAAVFALGIYLVKTHQDFYKWMKVIVMSSLIPVGYGLLS 190 Query: 191 VAMAGGVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQRFAFTGYLGVL 250 +A+ G RL+STF HPNILAFYLTLIIS+G Y+ K+ + F YL VL Sbjct: 191 IALHLKGFNGNRLESTFDHPNILAFYLTLIISVGFYLWKADAQVFGPRVKKLFPFYLIVL 250 Query: 251 MVLLLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQQRIMDLDGGGT 310 + +LL TQTRSAW VLYGL FER+YL ++ L ++ +IP V+ RI+DL+ G Sbjct: 251 IGMLLATQTRSAWIGFGTGLVLYGLFFERKYLFVVITLPIIAFMIPEVRDRILDLNSGNE 310 Query: 311 VVGNYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPLSGNFEWKAHNV 370 VV YAKLNSFAWR +WESA+NWM P++YLTGYG E F YYS +FFPLSG F+ AHNV Sbjct: 311 VVA-YAKLNSFAWRKYIWESAINWMEPAKYLTGYGSEGFMYYSVIFFPLSGGFKTGAHNV 369 Query: 371 FVQLIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYLVVSASDNMLSY 430 +V+L FD+G+ G++AY+ LF + + L L +GI I L+QY + S SDNML Y Sbjct: 370 YVELFFDLGIFGVLAYITLFAASAFKIFPLRKAKLLLSGIAILQLLQYCLYSYSDNMLFY 429 Query: 431 LAFNWYFWMAMGM 443 L+FNWYFW +G+ Sbjct: 430 LSFNWYFWFFIGL 442