BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1241.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775400.1| exopolysaccharide biosynthesis protein [Herb...   169   1e-40
ref|YP_003049226.1| chain length determinant protein EpsF [Methy...   123   1e-26
ref|YP_003166103.1| chain length determinant protein EpsF [Candi...   113   8e-24
ref|YP_001352323.1| exopolysaccharide biosynthesis protein [Jant...   112   3e-23
ref|YP_004753385.1| lipopolysaccharide biosynthesis [Collimonas ...   111   5e-23

>ref|YP_003775400.1| exopolysaccharide biosynthesis protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63492.1| exopolysaccharide biosynthesis protein [Herbaspirillum seropedicae
           SmR1]
          Length = 466

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/124 (71%), Positives = 107/124 (86%), Gaps = 1/124 (0%)

Query: 1   MNRTRDELAVLSRELESAQRAYEMTSQRFAQTSLEGQSNQSDISLLSAAVPPVNPSSPRI 60
           +NRTRDEL+VLSR+L+SAQRAYE+T+QRF QT+LEGQSNQSDIS+L++A+PP  PSSPR+
Sbjct: 336 LNRTRDELSVLSRDLDSAQRAYELTAQRFTQTNLEGQSNQSDISILASAMPPTAPSSPRL 395

Query: 61  LINLILAVFVGGILGVMTALGLELTNRRVRSEQDLVEELGLPVLGSITRPVTSSSR-RRF 119
            INLIL++FVG +LGVM ALGLEL NRRVRSE DLVE +GLPVLG+I+ P     R RR 
Sbjct: 396 FINLILSMFVGLVLGVMAALGLELINRRVRSEADLVEGIGLPVLGTISHPAAQKGRDRRL 455

Query: 120 GFGR 123
           GFGR
Sbjct: 456 GFGR 459


>ref|YP_003049226.1| chain length determinant protein EpsF [Methylotenera mobilis JLW8]
 gb|ACT48699.1| chain length determinant protein EpsF [Methylotenera mobilis JLW8]
          Length = 476

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 87/118 (73%)

Query: 1   MNRTRDELAVLSRELESAQRAYEMTSQRFAQTSLEGQSNQSDISLLSAAVPPVNPSSPRI 60
           +NRTRD+LA+L +++++AQRA E  +QRF QTSLEGQ NQ+D+ +L+ AVPP+  SSP+ 
Sbjct: 338 LNRTRDQLALLQKDVDNAQRALEAVNQRFTQTSLEGQGNQTDVGILNPAVPPIKHSSPKT 397

Query: 61  LINLILAVFVGGILGVMTALGLELTNRRVRSEQDLVEELGLPVLGSITRPVTSSSRRR 118
           L+NLILA+F+G +LGV  AL  EL +RRVRS  D+ E + +PVLG I        RRR
Sbjct: 398 LVNLILAIFLGTLLGVGFALLAELLDRRVRSADDIQEGVAIPVLGVIVSDSLEQPRRR 455


>ref|YP_003166103.1| chain length determinant protein EpsF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gb|ACV34174.1| chain length determinant protein EpsF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 471

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 84/103 (81%)

Query: 5   RDELAVLSRELESAQRAYEMTSQRFAQTSLEGQSNQSDISLLSAAVPPVNPSSPRILINL 64
           RD+++VL +++ESAQR+YE+ +QR AQTSLE Q+ Q+++ +L+AA PP+ PSSPRIL+N 
Sbjct: 342 RDQVSVLQKDVESAQRSYELVTQRLAQTSLESQTQQTNLVVLTAATPPLEPSSPRILLNT 401

Query: 65  ILAVFVGGILGVMTALGLELTNRRVRSEQDLVEELGLPVLGSI 107
           ++A+F+G +LGV   L LEL +RR+RS +DL+E +GLP+L  I
Sbjct: 402 LVAIFLGTLLGVAATLLLELLSRRIRSPEDLMETVGLPLLAVI 444


>ref|YP_001352323.1| exopolysaccharide biosynthesis protein [Janthinobacterium sp.
           Marseille]
 gb|ABR90532.1| exopolysaccharide biosynthesis protein [Janthinobacterium sp.
           Marseille]
          Length = 464

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/127 (47%), Positives = 86/127 (67%)

Query: 1   MNRTRDELAVLSRELESAQRAYEMTSQRFAQTSLEGQSNQSDISLLSAAVPPVNPSSPRI 60
           +N  RDEL+VL+ E+E+A++AYE  SQR  QTSLEGQS QSDIS+L+ A  P +P+SPR+
Sbjct: 338 LNGARDELSVLANEMENAKKAYETASQRLTQTSLEGQSMQSDISVLTVATAPRSPASPRL 397

Query: 61  LINLILAVFVGGILGVMTALGLELTNRRVRSEQDLVEELGLPVLGSITRPVTSSSRRRFG 120
           ++NL++A+ VG +LG+  AL +EL + RVR+ +DL     LP++G I +      R    
Sbjct: 398 MLNLLVALVVGLMLGIGAALAMELLDHRVRAAEDLTRIFDLPLIGVIEKTKRLGKRNPPR 457

Query: 121 FGRGKPA 127
            G   PA
Sbjct: 458 LGPALPA 464


>ref|YP_004753385.1| lipopolysaccharide biosynthesis [Collimonas fungivorans Ter331]
 gb|AEK62562.1| lipopolysaccharide biosynthesis [Collimonas fungivorans Ter331]
          Length = 463

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/121 (52%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 1   MNRTRDELAVLSRELESAQRAYEMTSQRFAQTSLEGQSNQSDISLLSAAVPPVNPSSPRI 60
           +NR RDELAVL++++ESAQ AY+  +QR +QT LEGQSNQSD+S+LS A  P  P+SP I
Sbjct: 339 LNRARDELAVLAKDVESAQHAYDAAAQRLSQTELEGQSNQSDVSVLSPATVPTRPASPNI 398

Query: 61  LINLILAVFVGGILGVMTALGLELTNRRVRSEQDLVEELGLPVLGSITRPVTSSSRRRFG 120
            +N++L++  G +LG+  A+  ELTNRRVR+  DL+  L  PVLG+I   V     RR  
Sbjct: 399 PLNMVLSLLFGSMLGLALAVLAELTNRRVRTGSDLLNVLDAPVLGTI---VWRKPARRIA 455

Query: 121 F 121
           F
Sbjct: 456 F 456