BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1240.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774851.1| hypothetical protein Hsero_1427 [Herbaspiril...   198   3e-49
ref|YP_296967.1| hypothetical protein Reut_A2762 [Ralstonia eutr...   172   1e-41
ref|YP_727505.1| hypothetical protein H16_A3062 [Ralstonia eutro...   171   3e-41
ref|YP_004686811.1| hypothetical protein CNE_1c30180 [Cupriavidu...   171   3e-41
sp|Q0K784|Y3062_RALEH RecName: Full=UPF0345 protein H16_A3062         170   8e-41

>ref|YP_003774851.1| hypothetical protein Hsero_1427 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62943.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/104 (95%), Positives = 102/104 (98%)

Query: 1   MSTQFDNVTVLKKGNVYFDGKCVSHTVLLADGTKKTLGVILPSTLNFSTGAPEIMEINGG 60
           MSTQFDNVTVLKKGNVYFDGKCVSHTVL ADGTKKTLGVILP++L F+TGAPEIMEINGG
Sbjct: 6   MSTQFDNVTVLKKGNVYFDGKCVSHTVLFADGTKKTLGVILPASLTFNTGAPEIMEINGG 65

Query: 61  SCRVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 104
           SCRVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG
Sbjct: 66  SCRVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 109


>ref|YP_296967.1| hypothetical protein Reut_A2762 [Ralstonia eutropha JMP134]
 sp|Q46XL0|Y2762_RALEJ RecName: Full=UPF0345 protein Reut_A2762
 gb|AAZ62123.1| Protein of unknown function DUF1255 [Ralstonia eutropha JMP134]
          Length = 105

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/102 (78%), Positives = 88/102 (86%)

Query: 3   TQFDNVTVLKKGNVYFDGKCVSHTVLLADGTKKTLGVILPSTLNFSTGAPEIMEINGGSC 62
           +QFDNV+V+KK N+YFDGKCVSHTVL +DGT+KTLGVI P+TL F+TGAPEIMEIN G C
Sbjct: 4   SQFDNVSVVKKANLYFDGKCVSHTVLFSDGTRKTLGVIFPATLTFNTGAPEIMEINAGVC 63

Query: 63  RVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 104
           RVRL G EAW TY AG  F VPGNSSFDIEV ETLDYVCHFG
Sbjct: 64  RVRLAGSEAWQTYGAGQQFDVPGNSSFDIEVQETLDYVCHFG 105


>ref|YP_727505.1| hypothetical protein H16_A3062 [Ralstonia eutropha H16]
 emb|CAJ94137.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 119

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/102 (76%), Positives = 86/102 (84%)

Query: 3   TQFDNVTVLKKGNVYFDGKCVSHTVLLADGTKKTLGVILPSTLNFSTGAPEIMEINGGSC 62
           +QFDNV+V+KK N+YFDGKCVSHTVL  DGT+KTLGVI P+ L F+TGAPEIMEIN G+C
Sbjct: 18  SQFDNVSVVKKANLYFDGKCVSHTVLFPDGTRKTLGVIFPAALTFNTGAPEIMEINAGTC 77

Query: 63  RVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 104
           RVRL G E W TY AG  FSVPGNSSFDIEV ETLDYVCHF 
Sbjct: 78  RVRLAGSEDWQTYGAGQQFSVPGNSSFDIEVQETLDYVCHFA 119


>ref|YP_004686811.1| hypothetical protein CNE_1c30180 [Cupriavidus necator N-1]
 gb|AEI78330.1| protein UPF0345 [Cupriavidus necator N-1]
          Length = 119

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 78/102 (76%), Positives = 86/102 (84%)

Query: 3   TQFDNVTVLKKGNVYFDGKCVSHTVLLADGTKKTLGVILPSTLNFSTGAPEIMEINGGSC 62
           +QFDNV+V+KK N+YFDGKCVSHTVL  DGT+KTLGVI P+ L F+TGAPEIMEIN G+C
Sbjct: 18  SQFDNVSVVKKANLYFDGKCVSHTVLFPDGTRKTLGVIFPAALTFNTGAPEIMEINAGTC 77

Query: 63  RVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 104
           RVRL G E W TY AG  FSVPGNSSFDIEV ETLDYVCHF 
Sbjct: 78  RVRLAGSEDWQTYGAGQQFSVPGNSSFDIEVQETLDYVCHFA 119


>sp|Q0K784|Y3062_RALEH RecName: Full=UPF0345 protein H16_A3062
          Length = 105

 Score =  170 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 78/102 (76%), Positives = 86/102 (84%)

Query: 3   TQFDNVTVLKKGNVYFDGKCVSHTVLLADGTKKTLGVILPSTLNFSTGAPEIMEINGGSC 62
           +QFDNV+V+KK N+YFDGKCVSHTVL  DGT+KTLGVI P+ L F+TGAPEIMEIN G+C
Sbjct: 4   SQFDNVSVVKKANLYFDGKCVSHTVLFPDGTRKTLGVIFPAALTFNTGAPEIMEINAGTC 63

Query: 63  RVRLKGEEAWNTYAAGTTFSVPGNSSFDIEVTETLDYVCHFG 104
           RVRL G E W TY AG  FSVPGNSSFDIEV ETLDYVCHF 
Sbjct: 64  RVRLAGSEDWQTYGAGQQFSVPGNSSFDIEVQETLDYVCHFA 105