BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1223.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspiril... 405 e-111 ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Ja... 352 3e-95 ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [He... 340 1e-91 ref|YP_004753904.1| ribosomal RNA small subunit methyltransferas... 321 7e-86 ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase... 320 1e-85 >ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1] gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 221/241 (91%), Positives = 233/241 (96%) Query: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSTLEKKRAH 60 MPRF+ P LGIGS LVLPEQIAHHI VLRLQPGD +TLFNGEGGEYTA+LS +EKKRAH Sbjct: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDAITLFNGEGGEYTATLSAVEKKRAH 60 Query: 61 AEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCVVRLSGDR 120 A+VKTFSPREAELPYALTLAQALPEG+KMDWIVEKAVELGATALQPLAAQRCVVRLSG+R Sbjct: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTDFKRWIAQSDLHRRILLSPRGTEPLSGWA 180 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVT+FKRWIAQSDLHRRILLSPRG EPLSGWA Sbjct: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 Query: 181 RHHPPQAVTVMVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQAVT++VGPEGGFS+EEE+LACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE Sbjct: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 Query: 241 L 241 L Sbjct: 241 L 241 >ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp. Marseille] gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 241 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 172/241 (71%), Positives = 204/241 (84%) Query: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSTLEKKRAH 60 MPRFY P PL IG+ + LP+ +AHHIQV+RL GD +TLFNGEGGEYTA+++T+EKKR Sbjct: 1 MPRFYCPQPLAIGAVITLPDHVAHHIQVVRLGSGDHITLFNGEGGEYTATITTIEKKRVT 60 Query: 61 AEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCVVRLSGDR 120 AE+K F+PRE ELPYA+T+AQALPE SKMDWI+EKAVELG A+QPLA+QRCVVRLS +R Sbjct: 61 AEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTDFKRWIAQSDLHRRILLSPRGTEPLSGWA 180 A KK HWQG+I AA+EQ GRNRL L E DF +W+ Q DLH+RILLSPR + LS WA Sbjct: 121 AAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPRAEQSLSDWA 180 Query: 181 RHHPPQAVTVMVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQ+V +M+GPEGGF+++EEDLA AQGALMLSMG RVLRTETAGL+ALAALNAVWGE Sbjct: 181 RHHPPQSVALMIGPEGGFTDKEEDLALAQGALMLSMGPRVLRTETAGLSALAALNAVWGE 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas arsenicoxydans] emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 241 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 172/241 (71%), Positives = 197/241 (81%) Query: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSTLEKKRAH 60 MPRFY P L IG+ + LPE +AHHIQV+RL GD +TLFNGEGGEYTA++ST+EKKR Sbjct: 1 MPRFYCPQALVIGAVVTLPEHVAHHIQVIRLSAGDAITLFNGEGGEYTATISTIEKKRVT 60 Query: 61 AEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCVVRLSGDR 120 AE+K F PRE ELPYA+TLAQALPE SKMDWI+EKAVELGA ALQPLA+QRCVVRLS +R Sbjct: 61 AEIKIFEPREVELPYAITLAQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTDFKRWIAQSDLHRRILLSPRGTEPLSGWA 180 A KK HWQGII AA+EQ GRNRL L E DF +W Q DLH RI+LSPR + LS WA Sbjct: 121 AAKKMQHWQGIIIAASEQSGRNRLTTLAEPADFNQWATQQDLHVRIMLSPRAEQSLSDWA 180 Query: 181 RHHPPQAVTVMVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQ+V +M+GPEGGF+E+EE A A GALMLSMG RVLRTETAG+AA+AALNAVWG Sbjct: 181 RHHPPQSVALMIGPEGGFTEKEETQAIANGALMLSMGPRVLRTETAGMAAIAALNAVWGA 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|YP_004753904.1| ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] gb|AEK63081.1| Ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] Length = 241 Score = 321 bits (822), Expect = 7e-86, Method: Composition-based stats. Identities = 170/241 (70%), Positives = 201/241 (83%) Query: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSTLEKKRAH 60 MPRFY P PL IG L LPE +AHH+ VLRL +TLFNGEGGEYTA++ ++EKKR + Sbjct: 1 MPRFYIPAPLEIGQLLALPEAVAHHLLVLRLGLAAPITLFNGEGGEYTATIVSIEKKRVN 60 Query: 61 AEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCVVRLSGDR 120 E+KTFSPREAELPYA+TLAQALPE SK+DWI+EKAVELG A+QPLAAQRCVVRL+ +R Sbjct: 61 VEIKTFSPREAELPYAITLAQALPESSKLDWIIEKAVELGVAAIQPLAAQRCVVRLNSER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTDFKRWIAQSDLHRRILLSPRGTEPLSGWA 180 AEKKQ HWQ +I AAAEQ GRNRLP L ++ F W Q DLH+RILLSPRG + LS WA Sbjct: 121 AEKKQNHWQAVIVAAAEQSGRNRLPTLSTLSPFNDWAQQQDLHKRILLSPRGEQSLSDWA 180 Query: 181 RHHPPQAVTVMVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RH PPQA+ +++GPEGGF+E EE+LAC+QGALMLSMG R+LRTETAGLAALAA+NA+WGE Sbjct: 181 RHQPPQALALLIGPEGGFTEAEENLACSQGALMLSMGPRILRTETAGLAALAAINAIWGE 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 164/240 (68%), Positives = 194/240 (80%) Query: 1 MPRFYFPHPLGIGSALVLPEQIAHHIQVLRLQPGDTVTLFNGEGGEYTASLSTLEKKRAH 60 MPRF+ P PL IG LVLP+ +AHHIQV+RLQ G VTLFNG+G EY A+LS LEKKR Sbjct: 1 MPRFHCPLPLAIGDILVLPDNVAHHIQVIRLQAGSMVTLFNGDGNEYVATLSVLEKKRVT 60 Query: 61 AEVKTFSPREAELPYALTLAQALPEGSKMDWIVEKAVELGATALQPLAAQRCVVRLSGDR 120 E+KT + R ELPYA+TLAQALPE SKMDWI+EKAVELGA +QPL+AQRCVVRLS +R Sbjct: 61 VEIKTCTERSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTDFKRWIAQSDLHRRILLSPRGTEPLSGWA 180 AEK+Q HWQGII +A+EQ GRNRL L V+DF RWIAQ D+H+RILL+PR + L+ WA Sbjct: 121 AEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILLTPRADQSLADWA 180 Query: 181 RHHPPQAVTVMVGPEGGFSEEEEDLACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RH PPQAVT+++GPEGG S++EE+LA A GA+ LSMG RVLRTETAGLAALA L WG+ Sbjct: 181 RHQPPQAVTLLIGPEGGLSDDEENLAIAHGAIALSMGPRVLRTETAGLAALAMLAGAWGD 240