BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1222.p (609 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774837.1| amidase family protein [Herbaspirillum serop... 882 0.0 ref|ZP_08273634.1| Urea carboxylase [Oxalobacteraceae bacterium ... 650 0.0 gb|EGH07108.1| allophanate hydrolase [Pseudomonas syringae pv. m... 620 e-175 ref|YP_234262.1| allophanate hydrolase [Pseudomonas syringae pv.... 617 e-174 ref|ZP_07262700.1| allophanate hydrolase [Pseudomonas syringae p... 617 e-174 >ref|YP_003774837.1| amidase family protein [Herbaspirillum seropedicae SmR1] gb|ADJ62929.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 611 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 495/610 (81%), Positives = 544/610 (89%), Gaps = 4/610 (0%) Query: 1 MTATHALQQAAPEAAPTTIAATLAAYREGRSTPGKVVAELLARIESAGRDEVWISRVPSK 60 M H QQ A AP TIA+TLAAYR G STPGK VA LLA IE A R+EVWISRVP+K Sbjct: 1 MKPAHIPQQVA---APVTIASTLAAYRNGSSTPGKTVASLLALIEQADREEVWISRVPAK 57 Query: 61 QLKQQAAALDLMLQIKGDAVLESMPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESAT 120 QLKQQAAALDLM QIKG+ VLESMPLFGIPFAVKDNIDVA M TT ACPEF R+A SAT Sbjct: 58 QLKQQAAALDLMWQIKGETVLESMPLFGIPFAVKDNIDVAGMPTTAACPEFSRVAETSAT 117 Query: 121 VVQRLQAAGALLVGKTNLDQFATGLVGVRSPYGAVRNAIKPEYVSGGSSSGSAVAVALGQ 180 VVQRLQAAGALLVGKTNLDQFATGLVGVRSPYGAVRNAI P+YVSGGSSSGSAVAVALGQ Sbjct: 118 VVQRLQAAGALLVGKTNLDQFATGLVGVRSPYGAVRNAIAPDYVSGGSSSGSAVAVALGQ 177 Query: 181 VMFSLGTDTAGSGRVPAAFNHLVGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRV 240 VMF+LGTDTAGSGR+PAAFNHLVGLKP++GLISA+GLVPACRTLDCISIFAHDVADAW V Sbjct: 178 VMFALGTDTAGSGRIPAAFNHLVGLKPSRGLISAQGLVPACRTLDCISIFAHDVADAWHV 237 Query: 241 LHSASGFDAEDGYSRRPTMLGVKRRGYRIAIPEQCEFFGDSVAQEAWERSLAQIAALPGV 300 LHSA+G+DA D Y+R+ MLG+KRRGYRIAIP EF+GD AQ+AW+R+LA+IA LPGV Sbjct: 238 LHSAAGYDAADAYARKLPMLGLKRRGYRIAIPAATEFYGDLAAQDAWDRTLARIAELPGV 297 Query: 301 SLAKIPFAPFSEAAQLLYQGPWVAERRAALGDFFLENPEAIHPVVRQITAQADDYDAVDS 360 +LA+IPFAPF++AA+LLYQGPWVAERRAALGDFF++ P+A+HPVVR+ITAQA DYDAV + Sbjct: 298 TLARIPFAPFADAARLLYQGPWVAERRAALGDFFVKQPQAVHPVVREITAQAADYDAVAA 357 Query: 361 FNAQYRLADLRRQAENLLEGSDLMLVPTTTTFPTIADVEADPVVRNAQLGHYTNFVNLMD 420 F QYRLA+LRRQAE LLEG+DLMLVPTTT PTIA+V+ADPV RN+QLG+YTNFVNLMD Sbjct: 358 FQGQYRLAELRRQAEQLLEGADLMLVPTTTGMPTIAEVQADPVRRNSQLGYYTNFVNLMD 417 Query: 421 MSALAIPAVWRRDGLPAGVTLIGPAGADHLLAEAGACFQQQLGGAGQADAIAAAPLPFNE 480 MSALAIP +WR DGLPAGVTLIGPAGADHLLAEAGA Q QLGGA QADA+A+APLPF E Sbjct: 418 MSALAIPGLWRNDGLPAGVTLIGPAGADHLLAEAGARLQHQLGGAAQADAVASAPLPFTE 477 Query: 481 STIKVCVVGAHLAGQPLNWQLLEAGARRMAVTRTAACYRLYALAGTTPPKPGLARTEG-D 539 TI++CVVGAHL+GQPLNWQLLEAGARR+A TRTA YRLYALA + PPKPGLART G D Sbjct: 478 ETIRLCVVGAHLSGQPLNWQLLEAGARRLASTRTAPRYRLYALANSAPPKPGLARTAGAD 537 Query: 540 GAAIAVEVWEMPLRQFGGFVAAIPAPLGIGTVELADGSSVKGFICEPAGIAGATDITHHG 599 GAAIAVEVWEMPLR G FVAAIPAPLGIGTVEL DGSSVKGFICEPAGIA ATDITHHG Sbjct: 538 GAAIAVEVWEMPLRHVGAFVAAIPAPLGIGTVELEDGSSVKGFICEPAGIADATDITHHG 597 Query: 600 GWVNYLHSLN 609 GW+NYL++LN Sbjct: 598 GWINYLNALN 607 >ref|ZP_08273634.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32889.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480] Length = 594 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 366/588 (62%), Positives = 439/588 (74%), Gaps = 7/588 (1%) Query: 18 TIAATLAAYREGRSTPGKVVAELLARIESAGRDEVWISRVPSKQLKQQAAALDLMLQIKG 77 T+A AY + P + + +LARI + R E+WISRV L QA ALD +LQ +G Sbjct: 11 TLADLHTAYAQQNLLPSQCIERVLARIATVERPEIWISRVADDALLAQARALDALLQEEG 70 Query: 78 DAVLESMPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESATVVQRLQAAGALLVGKTN 137 AVL MPLFG+PFA+KDNID + TT C EF SATVV++LQAAGALL+GKTN Sbjct: 71 AAVLARMPLFGVPFAIKDNIDALGLPTTAGCTEFSFTPQRSATVVEKLQAAGALLIGKTN 130 Query: 138 LDQFATGLVGVRSPYGAVRNAIKPEYVSGGSSSGSAVAVALGQVMFSLGTDTAGSGRVPA 197 LDQFATGLVG RSPYGAVRNAI P YVSGGSSSGSAVAVALG V FSLGTDTAGSGRVPA Sbjct: 131 LDQFATGLVGTRSPYGAVRNAIDPAYVSGGSSSGSAVAVALGLVGFSLGTDTAGSGRVPA 190 Query: 198 AFNHLVGLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSASGFDAEDGYSRRP 257 N +VGLKP++GL+S RG+ PACRTLDC+SIFA VADAW+V A+G DAED YSR Sbjct: 191 GLNGIVGLKPSRGLLSTRGVFPACRTLDCVSIFARTVADAWQVTQVAAGLDAEDSYSRAV 250 Query: 258 TMLGVKRRGYRIAIPEQCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSEAAQLL 317 M G+++RG RIA+P EFFGD+ A++A+E +LAQ+ ALPG + + + PF EAA LL Sbjct: 251 PMTGIRQRGLRIALPAVLEFFGDAAAEQAFEATLAQLRALPGCTFGTVDYTPFKEAAALL 310 Query: 318 YQGPWVAERRAALGDFFLENPEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAENL 377 Y GPWVAER AA+GDFF E+ + ++PVV I Q +Y AVD+FN QYRLADLRR AE Sbjct: 311 YYGPWVAERLAAVGDFFTEHKDQMNPVVAGIIGQGANYSAVDAFNGQYRLADLRRAAETA 370 Query: 378 LEGSDLMLVPTTTTFPTIADVEADPVVRNAQLGHYTNFVNLMDMSALAIPAVWRRDGLPA 437 L D +L+PTT T PT+AD+E +PV+RN++LG+YTNFVN DM+AL++PA+ R DGLPA Sbjct: 371 LAPYDFLLLPTTPTMPTLADLEREPVLRNSELGYYTNFVNFFDMAALSVPALSRADGLPA 430 Query: 438 GVTLIGPAGADHLLAEAGACFQQQLGGAGQADAIAAAPLPFNESTIKVCVVGAHLAGQPL 497 G+TL+GP G+D LLA A AD + APLPFNE TI++ VVGAHL GQPL Sbjct: 431 GITLVGPCGSDQLLAAAAQ-----RLLPDAADTL-IAPLPFNEPTIQLAVVGAHLQGQPL 484 Query: 498 NWQLLEAGARRMAVTRTAACYRLYALAGTTPPKPGLARTEGDGAAIAVEVWEMPLRQFGG 557 NWQL E GARR+A T+TAA YRLYAL TTPPKPGL R DG AIA+EVWE+PLR+FG Sbjct: 485 NWQLTERGARRIASTQTAAQYRLYALPNTTPPKPGLQRC-ADGVAIAIEVWELPLRRFGE 543 Query: 558 FVAAIPAPLGIGTVELADGSSVKGFICEPAGIAGATDITHHGGWVNYL 605 FVA +PAPL IG++ELADG VKGF+CE IAGA DI+ HGGW+ YL Sbjct: 544 FVADVPAPLAIGSLELADGRWVKGFVCEGQAIAGAADISAHGGWLAYL 591 >gb|EGH07108.1| allophanate hydrolase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 601 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 359/581 (61%), Positives = 427/581 (73%) Query: 24 AAYREGRSTPGKVVAELLARIESAGRDEVWISRVPSKQLKQQAAALDLMLQIKGDAVLES 83 +A R G +T +V L A I++ R EVWI RVP+ L ++AAAL+ + GD+V E Sbjct: 11 SALRSGTTTLATLVHSLTAHIDADDRPEVWIYRVPAADLLERAAALEGIAAELGDSVYEQ 70 Query: 84 MPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESATVVQRLQAAGALLVGKTNLDQFAT 143 +PLFG+PFAVKDN DVA M TT ACP F A E+A VVQ L +GALL+GKTNLDQFAT Sbjct: 71 LPLFGVPFAVKDNFDVAGMLTTAACPAFAYTARENAHVVQLLLDSGALLIGKTNLDQFAT 130 Query: 144 GLVGVRSPYGAVRNAIKPEYVSGGSSSGSAVAVALGQVMFSLGTDTAGSGRVPAAFNHLV 203 GLVGVRSPYGAVRNA P YVSGGSSSGSAVAVA G V F+LGTDTAGSGRVPA FN +V Sbjct: 131 GLVGVRSPYGAVRNAHDPAYVSGGSSSGSAVAVARGYVSFALGTDTAGSGRVPAGFNGIV 190 Query: 204 GLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSASGFDAEDGYSRRPTMLGVK 263 GLKP+ GL S+RG+VPACRTLDC SIFA DV AW+V + +D D S L V+ Sbjct: 191 GLKPSLGLFSSRGVVPACRTLDCPSIFATDVMQAWQVAQVIAAYDPLDPGSVAVQALPVQ 250 Query: 264 RRGYRIAIPEQCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSEAAQLLYQGPWV 323 RR R+A+ QCEFFGD+ AQ A+ ++LA + P V+L +I F F EAA LLYQGPWV Sbjct: 251 RRAKRVAVARQCEFFGDTQAQAAYSKALAALRNDPLVTLKEIEFDVFVEAAALLYQGPWV 310 Query: 324 AERRAALGDFFLENPEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAENLLEGSDL 383 AERRAA+G FF EN +HPVVR I A +DAVD+FNA+YRLADL R AENLL D+ Sbjct: 311 AERRAAVGRFFTENAADVHPVVRGILQSAASFDAVDAFNARYRLADLTRAAENLLADVDV 370 Query: 384 MLVPTTTTFPTIADVEADPVVRNAQLGHYTNFVNLMDMSALAIPAVWRRDGLPAGVTLIG 443 ++VPT PTI V +P+ N++LG+YTNFVNLM+M A+AIPA+ R DGLPAG+TLIG Sbjct: 371 LVVPTAPCMPTINAVLENPIELNSRLGYYTNFVNLMNMCAIAIPAIARADGLPAGITLIG 430 Query: 444 PAGADHLLAEAGACFQQQLGGAGQADAIAAAPLPFNESTIKVCVVGAHLAGQPLNWQLLE 503 PAGAD LAE A +Q G A Q++A+A PLP N T++V VVGAHL GQPLNWQLLE Sbjct: 431 PAGADQRLAEFAAAWQPLFGKADQSEAVAMTPLPCNAPTVQVAVVGAHLHGQPLNWQLLE 490 Query: 504 AGARRMAVTRTAACYRLYALAGTTPPKPGLARTEGDGAAIAVEVWEMPLRQFGGFVAAIP 563 + AR + +T T+A YRLYALA T+PPKPGL R GA I VEVWEMPL +FG FVAAIP Sbjct: 491 SSARLLRLTTTSADYRLYALAKTSPPKPGLVRVPHQGARIEVEVWEMPLSRFGAFVAAIP 550 Query: 564 APLGIGTVELADGSSVKGFICEPAGIAGATDITHHGGWVNY 604 APLGIG+++LADG+ VKGFICEP G+ GA DIT GW Y Sbjct: 551 APLGIGSLQLADGAWVKGFICEPGGLEGALDITDFKGWRAY 591 >ref|YP_234262.1| allophanate hydrolase [Pseudomonas syringae pv. syringae B728a] gb|AAY36224.1| Amidase [Pseudomonas syringae pv. syringae B728a] Length = 606 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 354/581 (60%), Positives = 426/581 (73%) Query: 24 AAYREGRSTPGKVVAELLARIESAGRDEVWISRVPSKQLKQQAAALDLMLQIKGDAVLES 83 +A R G +T +V L A I++ R EVWI RVP QL ++A AL+ + + GDA+ + Sbjct: 15 SALRSGETTLTTLVHTLTAHIDADDRAEVWIHRVPLAQLVERAKALEGIAEEMGDALYDR 74 Query: 84 MPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESATVVQRLQAAGALLVGKTNLDQFAT 143 +PLFG+PFAVKDN DVA+M TT ACP F + ++A VVQ L +GA+L+GKTNLDQFAT Sbjct: 75 LPLFGVPFAVKDNFDVAQMPTTAACPTFAYVPEDNAHVVQLLLDSGAILMGKTNLDQFAT 134 Query: 144 GLVGVRSPYGAVRNAIKPEYVSGGSSSGSAVAVALGQVMFSLGTDTAGSGRVPAAFNHLV 203 GLVGVRSPYGAVRNA P YVSGGSSSGSAVAVA G V F+LGTDTAGSGRVPA FN +V Sbjct: 135 GLVGVRSPYGAVRNAHDPAYVSGGSSSGSAVAVARGYVSFALGTDTAGSGRVPAGFNGIV 194 Query: 204 GLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSASGFDAEDGYSRRPTMLGVK 263 GLKP+ GL S+RG+VPACRTLDC SIFA+DV AW+V + +D D S L V+ Sbjct: 195 GLKPSLGLFSSRGVVPACRTLDCPSIFANDVMQAWQVAQVIAAYDPLDASSVAVQALPVQ 254 Query: 264 RRGYRIAIPEQCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSEAAQLLYQGPWV 323 RR R+A+ CEFFGD AQ A+ ++L + P V+++ I F F+EAA LLYQGPWV Sbjct: 255 RRVRRVAVARHCEFFGDEQAQAAYLKTLEALQNDPLVTVSAIEFDVFAEAAALLYQGPWV 314 Query: 324 AERRAALGDFFLENPEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAENLLEGSDL 383 AERRAA+G+FF N IHPVVR I AD +DAVD+FNA+YRLA+L R A+ LL D+ Sbjct: 315 AERRAAIGEFFASNAADIHPVVRGIVQSADSFDAVDTFNARYRLAELTRAAQQLLTDIDV 374 Query: 384 MLVPTTTTFPTIADVEADPVVRNAQLGHYTNFVNLMDMSALAIPAVWRRDGLPAGVTLIG 443 ++VPT PTI V +PV N+QLG+YTNFVNLM+M A+AIP R DGLPAG+TLIG Sbjct: 375 LVVPTAPCMPTIEAVLGNPVALNSQLGYYTNFVNLMNMCAIAIPTDRRADGLPAGITLIG 434 Query: 444 PAGADHLLAEAGACFQQQLGGAGQADAIAAAPLPFNESTIKVCVVGAHLAGQPLNWQLLE 503 PAGAD LAE A +Q G A Q DA+A APLP+N T++V VVGAHL GQPLNWQLLE Sbjct: 435 PAGADQRLAEIAAAWQSLFGQADQRDAVAMAPLPYNSPTVQVAVVGAHLVGQPLNWQLLE 494 Query: 504 AGARRMAVTRTAACYRLYALAGTTPPKPGLARTEGDGAAIAVEVWEMPLRQFGGFVAAIP 563 GAR + T T+A YRLYALA T+PPKPGL R GA+I +EVWEMPL QFG FVAAIP Sbjct: 495 GGARLLRSTTTSADYRLYALAETSPPKPGLVRVAEQGASIEIEVWEMPLNQFGAFVAAIP 554 Query: 564 APLGIGTVELADGSSVKGFICEPAGIAGATDITHHGGWVNY 604 APLGIG+++LADG VKGFICEP G+ GA DIT + GW Y Sbjct: 555 APLGIGSLQLADGQWVKGFICEPGGLEGALDITDYKGWRAY 595 >ref|ZP_07262700.1| allophanate hydrolase [Pseudomonas syringae pv. syringae 642] Length = 601 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 355/581 (61%), Positives = 424/581 (72%) Query: 24 AAYREGRSTPGKVVAELLARIESAGRDEVWISRVPSKQLKQQAAALDLMLQIKGDAVLES 83 +A R G +T +V L A+I++ R EVWI RVP QL ++A AL+ + GDAV E Sbjct: 11 SALRSGETTLTTLVHTLTAQIDTDDRAEVWIHRVPLAQLVERAKALESIAVQLGDAVYER 70 Query: 84 MPLFGIPFAVKDNIDVAEMSTTGACPEFGRLASESATVVQRLQAAGALLVGKTNLDQFAT 143 +PLFG+PFAVKDN DVA M TT ACP F +A ++A VVQ L +GA+L+GKTNLDQFAT Sbjct: 71 LPLFGVPFAVKDNFDVAHMPTTAACPTFAYVAEDNAHVVQLLLDSGAILMGKTNLDQFAT 130 Query: 144 GLVGVRSPYGAVRNAIKPEYVSGGSSSGSAVAVALGQVMFSLGTDTAGSGRVPAAFNHLV 203 GLVGVRSPYGAVRNA P YVSGGSSSGSAVAVA G V F+LGTDTAGSGRVPA FN +V Sbjct: 131 GLVGVRSPYGAVRNAHDPAYVSGGSSSGSAVAVARGYVSFALGTDTAGSGRVPAGFNGIV 190 Query: 204 GLKPTKGLISARGLVPACRTLDCISIFAHDVADAWRVLHSASGFDAEDGYSRRPTMLGVK 263 GLKP+ GL S+RG+VPACRTLDC SIFA DV AW+V + +D D S L V+ Sbjct: 191 GLKPSLGLFSSRGIVPACRTLDCPSIFARDVMQAWQVAQVIAAYDPLDASSVAVQTLPVQ 250 Query: 264 RRGYRIAIPEQCEFFGDSVAQEAWERSLAQIAALPGVSLAKIPFAPFSEAAQLLYQGPWV 323 RR R+A+ CEFFGD A+ A+ ++L + P V+++ I F F+EAA LLYQGPWV Sbjct: 251 RRVRRVAVARHCEFFGDEQAKAAYLKTLEALQNDPLVTVSAIEFDVFAEAAALLYQGPWV 310 Query: 324 AERRAALGDFFLENPEAIHPVVRQITAQADDYDAVDSFNAQYRLADLRRQAENLLEGSDL 383 AERRAA+G+FF N IHPVVR I AD +DAVD+F A+YRLA+L R A+ LL D+ Sbjct: 311 AERRAAIGEFFASNAADIHPVVRGIVQSADSFDAVDTFKARYRLAELTRAAQQLLTNIDV 370 Query: 384 MLVPTTTTFPTIADVEADPVVRNAQLGHYTNFVNLMDMSALAIPAVWRRDGLPAGVTLIG 443 ++VPT PTI V +PV N+QLG+YTNFVNLM+M A+AIP R DGLPAG+TLIG Sbjct: 371 LVVPTAPCMPTIEAVLGNPVALNSQLGYYTNFVNLMNMCAIAIPTDRRADGLPAGITLIG 430 Query: 444 PAGADHLLAEAGACFQQQLGGAGQADAIAAAPLPFNESTIKVCVVGAHLAGQPLNWQLLE 503 PAGAD LAE A +Q G A Q DA+A APLP+N T++V VVGAHL GQPLNWQLLE Sbjct: 431 PAGADQRLAEIAAAWQPLFGQADQRDAVAMAPLPYNSPTVQVAVVGAHLVGQPLNWQLLE 490 Query: 504 AGARRMAVTRTAACYRLYALAGTTPPKPGLARTEGDGAAIAVEVWEMPLRQFGGFVAAIP 563 GAR + T T+A YRLYALA T+PPKPGL R GA+I +EVWEMPL QFG FVAAIP Sbjct: 491 GGARLLRTTATSADYRLYALAETSPPKPGLVRVAEQGASIEIEVWEMPLSQFGAFVAAIP 550 Query: 564 APLGIGTVELADGSSVKGFICEPAGIAGATDITHHGGWVNY 604 APLGIG+++LADG VKGFICEP G+ GA DIT + GW Y Sbjct: 551 APLGIGSLQLADGQWVKGFICEPGGLEGALDITDYKGWRAY 591