BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1221.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942195.1| NMT1/THI5 like domain-containing protein [Va... 480 e-133 ref|YP_004152605.1| nmt1/thi5 like domain-containing protein [Va... 478 e-133 ref|YP_787085.1| ABC transporter substrate binding protein [Bord... 458 e-127 ref|ZP_08404613.1| ABC transporter substrate binding protein [Hy... 456 e-126 ref|ZP_06688960.1| ABC superfamily ATP binding cassette transpor... 450 e-124 >ref|YP_002942195.1| NMT1/THI5 like domain-containing protein [Variovorax paradoxus S110] gb|ACS16929.1| NMT1/THI5 like domain protein [Variovorax paradoxus S110] Length = 334 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 243/303 (80%), Positives = 276/303 (91%), Gaps = 1/303 (0%) Query: 36 ILRAQTVP-IRIGYWPVAAGLPFYAAVEAGYFKQAGLEVQALKFAGAQQVMEAMLAGRAD 94 I+RAQ P IRIG+WPVAAGLPF+AAV+ GYFK+AGL+V+ LKFAGAQQVME MLAGR D Sbjct: 32 IVRAQAAPKIRIGFWPVAAGLPFFAAVDRGYFKEAGLDVEPLKFAGAQQVMEGMLAGRCD 91 Query: 95 GSANGTGAGNLAIGEIAQPGLFKIFATNPSNAKYVLDEFLVPKDSPVKSIADLKGKKVAS 154 GS+NGTG+ NLAIGEIAQPGLFKIF TNPSNA++VLDEF+V KDSP K++A+L GKK+AS Sbjct: 92 GSSNGTGSANLAIGEIAQPGLFKIFCTNPSNARFVLDEFIVAKDSPTKTMAELAGKKIAS 151 Query: 155 GPGIQNVTLAKTVLERAGATGATVVELPIGQHVASLAAGQVDAAYTLEPTGTVGRMNNTT 214 GPGIQNVTL KT+LERAGATGATV ELPIGQHVA+L AGQVDA YTLEPTGTVGRMN TT Sbjct: 152 GPGIQNVTLCKTMLERAGATGATVSELPIGQHVAALVAGQVDACYTLEPTGTVGRMNGTT 211 Query: 215 RVLEAGVIAKYILGDPMAPWHGGAAALTTEFIKKNPELARKYIAAYARGIELVRSNPDQA 274 RV+EAGV+AKYILGDPMAPWHGGAA+LT+EFIKKNP+ ARKYIAAYARG+ELVRS PD A Sbjct: 212 RVIEAGVVAKYILGDPMAPWHGGAASLTSEFIKKNPDAARKYIAAYARGVELVRSKPDDA 271 Query: 275 RTYLKGYTAIEGSLTNEVPLAAYMLYNEFKPSDLAYFQKFYDLFVEKGVFSQRIVVDNLI 334 R ++KGYTAIEGSLT EVPLA+YMLYNEFKPSD+AYFQKFYDLF EKG+F +++ VD L+ Sbjct: 272 RQHMKGYTAIEGSLTAEVPLASYMLYNEFKPSDVAYFQKFYDLFTEKGIFEKKVPVDGLL 331 Query: 335 YKG 337 YK Sbjct: 332 YKA 334 >ref|YP_004152605.1| nmt1/thi5 like domain-containing protein [Variovorax paradoxus EPS] gb|ADU34494.1| NMT1/THI5 like domain protein [Variovorax paradoxus EPS] Length = 334 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 252/327 (77%), Positives = 290/327 (88%), Gaps = 2/327 (0%) Query: 12 ANRRSFIAKAGAVAATAAIAGAPAILRAQTVP-IRIGYWPVAAGLPFYAAVEAGYFKQAG 70 A+RR + +AG AA A+ APAI+RAQ P +RIGYWPVAAGLPF+AAV+ GYFK+AG Sbjct: 9 ASRRQLL-QAGIGAAGLAVLAAPAIVRAQAAPKLRIGYWPVAAGLPFFAAVDRGYFKEAG 67 Query: 71 LEVQALKFAGAQQVMEAMLAGRADGSANGTGAGNLAIGEIAQPGLFKIFATNPSNAKYVL 130 L+V+ LKFA AQQ+ME MLAGR DGSANGTG+ NLAIGEIAQPGLFKIF TNPSNAK+VL Sbjct: 68 LDVEPLKFAAAQQIMEGMLAGRCDGSANGTGSANLAIGEIAQPGLFKIFCTNPSNAKFVL 127 Query: 131 DEFLVPKDSPVKSIADLKGKKVASGPGIQNVTLAKTVLERAGATGATVVELPIGQHVASL 190 DEF+V KDSPVK++A+L GKKVASGPGIQNVTL KT+LERAGA GA V ELPIGQHVA+L Sbjct: 128 DEFIVAKDSPVKTVAELAGKKVASGPGIQNVTLCKTMLERAGAKGAVVSELPIGQHVAAL 187 Query: 191 AAGQVDAAYTLEPTGTVGRMNNTTRVLEAGVIAKYILGDPMAPWHGGAAALTTEFIKKNP 250 AAGQVDA YTLEPTGTVGRMN TTRV+EAGV+A+YILGDPMAPWHGGAA+LT+EFIKKNP Sbjct: 188 AAGQVDACYTLEPTGTVGRMNGTTRVIEAGVVARYILGDPMAPWHGGAASLTSEFIKKNP 247 Query: 251 ELARKYIAAYARGIELVRSNPDQARTYLKGYTAIEGSLTNEVPLAAYMLYNEFKPSDLAY 310 E+A+KYIAAYARG+ELVR+ PD AR ++KGYTAIEG LT EVPLA+YMLYNEFKPSD+AY Sbjct: 248 EVAKKYIAAYARGVELVRTKPDDARQHMKGYTAIEGKLTAEVPLASYMLYNEFKPSDVAY 307 Query: 311 FQKFYDLFVEKGVFSQRIVVDNLIYKG 337 FQKFYDLF EKG+F +++ VD L+YK Sbjct: 308 FQKFYDLFTEKGIFEKKVPVDALLYKA 334 >ref|YP_787085.1| ABC transporter substrate binding protein [Bordetella avium 197N] emb|CAJ50192.1| putative ABC transporter, substrate binding protein [Bordetella avium 197N] Length = 333 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 242/316 (76%), Positives = 282/316 (89%), Gaps = 1/316 (0%) Query: 23 AVAATAAIAGAPAILRAQTVP-IRIGYWPVAAGLPFYAAVEAGYFKQAGLEVQALKFAGA 81 + A AA G PA+ RAQT P IRIGYWPVAAGLPFYAAVE GYFK+AGL V+A KFAGA Sbjct: 18 SAALGAATLGMPALARAQTGPTIRIGYWPVAAGLPFYAAVEKGYFKEAGLNVEAQKFAGA 77 Query: 82 QQVMEAMLAGRADGSANGTGAGNLAIGEIAQPGLFKIFATNPSNAKYVLDEFLVPKDSPV 141 QQV+EAMLAGR+DGSANG G+ NLAIGEIA PGLFKIFA+NPSNAKYVLDEF+V KDSP+ Sbjct: 78 QQVIEAMLAGRSDGSANGIGSANLAIGEIASPGLFKIFASNPSNAKYVLDEFIVAKDSPI 137 Query: 142 KSIADLKGKKVASGPGIQNVTLAKTVLERAGATGATVVELPIGQHVASLAAGQVDAAYTL 201 +SIADLKGKKV SGPGIQN TLA+TVLERAGATGATVVEL I QHVA++AAGQ+DA YTL Sbjct: 138 RSIADLKGKKVGSGPGIQNSTLARTVLERAGATGATVVELAISQHVAAVAAGQLDACYTL 197 Query: 202 EPTGTVGRMNNTTRVLEAGVIAKYILGDPMAPWHGGAAALTTEFIKKNPELARKYIAAYA 261 EPTGTVGR N TTRVLEAGVIAKY+LGDPMAPW GG+A+LTT F+KK+P+ A+++IAAYA Sbjct: 198 EPTGTVGRANGTTRVLEAGVIAKYVLGDPMAPWFGGSASLTTAFLKKHPDEAKRFIAAYA 257 Query: 262 RGIELVRSNPDQARTYLKGYTAIEGSLTNEVPLAAYMLYNEFKPSDLAYFQKFYDLFVEK 321 RGIELVR+ P++AR YLKGYTAIEG++T EVPLAAY LYNEF P+D+ +FQKF+DLF EK Sbjct: 258 RGIELVRTQPEEARQYLKGYTAIEGAMTQEVPLAAYTLYNEFTPADVQHFQKFFDLFSEK 317 Query: 322 GVFSQRIVVDNLIYKG 337 GVF++++ VD+++YKG Sbjct: 318 GVFARKLDVDSMLYKG 333 >ref|ZP_08404613.1| ABC transporter substrate binding protein [Hylemonella gracilis ATCC 19624] gb|EGI78291.1| ABC transporter substrate binding protein [Hylemonella gracilis ATCC 19624] Length = 340 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 236/333 (70%), Positives = 287/333 (86%), Gaps = 3/333 (0%) Query: 6 PTAVHDANRRSFIAKAGAVAATAAIAGAPAILRAQTVP-IRIGYWPVAAGLPFYAAVEAG 64 P++V R+ + +AG AA + GAPA++RAQ+ P IRIGYWP+AAGLPFYAA+E G Sbjct: 10 PSSVATTRRK--LVQAGGAAAMLGVLGAPALVRAQSGPKIRIGYWPIAAGLPFYAAIERG 67 Query: 65 YFKQAGLEVQALKFAGAQQVMEAMLAGRADGSANGTGAGNLAIGEIAQPGLFKIFATNPS 124 +FK+AGL+V+AL+FAGAQQVMEA+L+ RADG+ANGTG+ N+AIGE+AQPG FKIF +NPS Sbjct: 68 FFKEAGLDVEALRFAGAQQVMEAVLSDRADGTANGTGSANIAIGELAQPGTFKIFCSNPS 127 Query: 125 NAKYVLDEFLVPKDSPVKSIADLKGKKVASGPGIQNVTLAKTVLERAGATGATVVELPIG 184 NAK VLD+ LVPKDSP K+IADLKGK+VASGPGIQNVTLAKTV ER GATG TVVELPIG Sbjct: 128 NAKNVLDQVLVPKDSPAKTIADLKGKRVASGPGIQNVTLAKTVFERGGATGVTVVELPIG 187 Query: 185 QHVASLAAGQVDAAYTLEPTGTVGRMNNTTRVLEAGVIAKYILGDPMAPWHGGAAALTTE 244 QHVA+LAAGQVD YTLEPTGT+GRMN TTR+LEAGVIAKY+LGDPMAPW GG+A+L++ Sbjct: 188 QHVAALAAGQVDGCYTLEPTGTIGRMNGTTRMLEAGVIAKYVLGDPMAPWFGGSASLSSA 247 Query: 245 FIKKNPELARKYIAAYARGIELVRSNPDQARTYLKGYTAIEGSLTNEVPLAAYMLYNEFK 304 FIKK P A+K+IAAY +G++ VRS +AR YLKGYTAIEG+LT EVPLAAY +YNEF Sbjct: 248 FIKKYPAEAKKFIAAYGKGVQFVRSQAVEARQYLKGYTAIEGALTGEVPLAAYTMYNEFT 307 Query: 305 PSDLAYFQKFYDLFVEKGVFSQRIVVDNLIYKG 337 P+D+A+FQKF+DLF EKG+FS R++VD ++YKG Sbjct: 308 PADVAHFQKFFDLFAEKGIFSSRLMVDTMLYKG 340 >ref|ZP_06688960.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF74114.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 247/338 (73%), Positives = 288/338 (85%), Gaps = 5/338 (1%) Query: 1 MKKNNPTAVHDANRRSFIAKAGAVAATAAIAGAPAILRAQTVP-IRIGYWPVAAGLPFYA 59 + +N P A +A RR I A AA APA++RAQ+ P IRIG+WPVAAGLPFYA Sbjct: 2 INRNAPFAF-NATRRRLIQ---GAALGAATLAAPALVRAQSGPVIRIGFWPVAAGLPFYA 57 Query: 60 AVEAGYFKQAGLEVQALKFAGAQQVMEAMLAGRADGSANGTGAGNLAIGEIAQPGLFKIF 119 AVE GYFK+AGL V+ LKFAGAQQVMEAMLAGRADGSANGTG+ NLAIGEIA PGLFKIF Sbjct: 58 AVEKGYFKEAGLNVEPLKFAGAQQVMEAMLAGRADGSANGTGSANLAIGEIASPGLFKIF 117 Query: 120 ATNPSNAKYVLDEFLVPKDSPVKSIADLKGKKVASGPGIQNVTLAKTVLERAGATGATVV 179 A+NPSNAK VLDEF+V KDSP+KSIADLKGKKV SGPGIQN TLAK VLERAGATGATVV Sbjct: 118 ASNPSNAKNVLDEFIVAKDSPIKSIADLKGKKVGSGPGIQNATLAKAVLERAGATGATVV 177 Query: 180 ELPIGQHVASLAAGQVDAAYTLEPTGTVGRMNNTTRVLEAGVIAKYILGDPMAPWHGGAA 239 EL I QHVA++AAGQ+DA YTLEPTGTVGR+N TTRVLE GVIAKY+LGDPMAPW GG+A Sbjct: 178 ELAISQHVAAVAAGQLDACYTLEPTGTVGRLNGTTRVLETGVIAKYVLGDPMAPWFGGSA 237 Query: 240 ALTTEFIKKNPELARKYIAAYARGIELVRSNPDQARTYLKGYTAIEGSLTNEVPLAAYML 299 +LTT F+KK+PE ++K+IAAYARGIEL+R+ P +AR ++KGYTAIEG +T EVPLAAY L Sbjct: 238 SLTTAFLKKHPEESKKFIAAYARGIELIRTKPAEARPFMKGYTAIEGPMTEEVPLAAYTL 297 Query: 300 YNEFKPSDLAYFQKFYDLFVEKGVFSQRIVVDNLIYKG 337 YNEF PSD+ YFQKF+DLF +KG+F+Q++ V +++YKG Sbjct: 298 YNEFTPSDIQYFQKFFDLFTDKGIFAQKVDVSSMLYKG 335